Experiment set1IT014 for Pseudomonas fluorescens FW300-N2E2

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Sodium propionate carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_6060 -4.6 -5.4 Propionate catabolism operon transcriptional regulator of GntR family [predicted] conserved
Pf6N2E2_6061 -4.0 -9.6 Methylisocitrate lyase (EC 4.1.3.30) (from data) conserved
Pf6N2E2_3884 -3.0 -7.5 Histone acetyltransferase HPA2 and related acetyltransferases conserved
Pf6N2E2_5279 -3.0 -6.9 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) conserved
Pf6N2E2_4800 -2.5 -13.1 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_3103 -2.5 -10.4 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) conserved
Pf6N2E2_424 -2.4 -7.5 Decarboxylase family protein conserved
Pf6N2E2_634 -2.0 -9.9 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_4799 -1.9 -10.6 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_2886 -1.6 -10.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4801 -1.6 -9.7 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) conserved
Pf6N2E2_2533 -1.5 -7.4 Rhodanese domain protein UPF0176 conserved
Pf6N2E2_5538 -1.5 -5.0 4-hydroxybenzoyl-CoA thioesterase family active site compare
Pf6N2E2_5093 -1.4 -8.8 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_233 -1.1 -6.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4060 -1.0 -6.6 Rubredoxin-NAD(+) reductase (EC 1.18.1.1) compare
Pf6N2E2_1726 +1.0 5.6 3-methylmercaptopropionyl-CoA ligase (DmdB) compare
Pf6N2E2_840 +1.1 5.6 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_5304 +1.5 10.4 ribosomal subunit interface protein, putative conserved
Pf6N2E2_1442 +1.9 10.2 Transcriptional regulators of sugar metabolism compare
Pf6N2E2_4041 +2.1 18.9 Acetyl-CoA hydrolase (EC 3.1.2.1) conserved
Pf6N2E2_5961 +2.2 13.8 Transcriptional regulator, TetR family conserved
Pf6N2E2_2642 +2.4 17.6 putative patatin-like phospholipase compare
Pf6N2E2_5760 +2.5 20.6 Sensory box histidine kinase/response regulator conserved
Pf6N2E2_5370 +5.3 40.8 LysR family transcriptional regulator QseA conserved


Specific phenotypes for carbon source Sodium propionate across organisms