Experiment set1IT014 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -4.1 -5.5 3-isopropylmalate dehydratase compare
AO356_21465 -3.8 -4.4 amidophosphoribosyltransferase compare
AO356_18325 -3.7 -12.1 argininosuccinate synthase compare
AO356_14435 -3.7 -7.8 anthranilate phosphoribosyltransferase compare
AO356_21400 -3.7 -8.1 isopropylmalate isomerase compare
AO356_09520 -3.5 -5.4 phosphoribosyl-AMP cyclohydrolase compare
AO356_21415 -3.5 -10.8 3-isopropylmalate dehydrogenase compare
AO356_10915 -3.5 -10.7 tryptophan synthase subunit beta compare
AO356_18275 -3.5 -13.3 ornithine carbamoyltransferase compare
AO356_12525 -3.5 -10.2 acetylglutamate kinase compare
AO356_08635 -3.5 -10.6 ATP phosphoribosyltransferase regulatory subunit compare
AO356_16170 -3.4 -12.1 acetolactate synthase 3 catalytic subunit compare
AO356_19795 -3.4 -3.3 glycerol-3-phosphate dehydrogenase compare
AO356_16175 -3.4 -8.7 acetolactate synthase 3 regulatory subunit compare
AO356_16180 -3.3 -14.4 ketol-acid reductoisomerase compare
AO356_10910 -3.3 -9.0 tryptophan synthase subunit alpha compare
AO356_02265 -3.3 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_13605 -3.2 -9.9 5,10-methylenetetrahydrofolate reductase compare
AO356_13405 -3.2 -10.6 methionine biosynthesis protein MetW compare
AO356_09810 -3.2 -5.3 imidazole glycerol phosphate synthase subunit HisH compare
AO356_14440 -3.2 -5.7 indole-3-glycerol-phosphate synthase compare
AO356_21440 -3.2 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_18980 -3.1 -11.1 sodium:C4-dicarboxylate symporter (dctA) (from data) conserved
AO356_03180 -3.1 -5.9 CysB family transcriptional regulator compare
AO356_13250 -3.1 -9.4 dihydroxy-acid dehydratase compare
AO356_00560 -3.1 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09375 -3.0 -19.6 glutamate synthase compare
AO356_13085 -3.0 -10.7 N-acetylglutamate synthase compare
AO356_13410 -3.0 -12.4 homoserine O-acetyltransferase compare
AO356_09815 -3.0 -6.3 imidazoleglycerol-phosphate dehydratase compare
AO356_06965 -3.0 -10.3 histidinol dehydrogenase compare
AO356_08735 -3.0 -12.2 phosphoserine phosphatase compare
AO356_21470 -2.9 -9.0 O-succinylhomoserine sulfhydrylase compare
AO356_00555 -2.8 -10.9 sulfite reductase compare
AO356_09370 -2.8 -10.7 glutamate synthase compare
AO356_10300 -2.8 -6.8 3-phosphoglycerate dehydrogenase compare
AO356_22200 -2.8 -8.2 sirohydrochlorin ferrochelatase compare
AO356_19090 -2.6 -2.5 phosphoribosylaminoimidazole synthetase compare
AO356_06550 -2.6 -9.6 2-isopropylmalate synthase compare
AO356_09525 -2.6 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_06970 -2.6 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_12780 -2.6 -7.4 argininosuccinate lyase compare
AO356_14420 -2.4 -12.8 anthranilate synthase compare
AO356_17520 -2.4 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_16600 -2.4 -2.7 malate:quinone oxidoreductase compare
AO356_10065 -2.4 -8.8 Fis family transcriptional regulator conserved
AO356_10340 -2.3 -11.9 phosphoserine phosphatase compare
AO356_12520 -2.2 -2.6 orotate phosphoribosyltransferase compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_09800 -2.2 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_20830 -2.1 -3.8 phosphoadenosine phosphosulfate reductase compare
AO356_11315 -2.0 -1.4 shikimate dehydrogenase compare
AO356_19050 -2.0 -3.0 cysteine synthase compare
AO356_11610 -2.0 -1.9 glycerol acyltransferase compare
AO356_14295 -2.0 -2.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_02315 -1.9 -4.6 DNA topoisomerase I compare
AO356_16070 -1.9 -5.8 poly(A) polymerase compare
AO356_16075 -1.9 -5.0 Fis family transcriptional regulator compare
AO356_15815 -1.9 -2.2 gamma-glutamyl kinase compare
AO356_15165 -1.9 -2.5 protein cII compare
AO356_10140 -1.8 -8.2 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_14430 -1.8 -5.8 anthranilate synthase compare
AO356_27215 -1.8 -3.6 hypothetical protein compare
AO356_07020 -1.8 -1.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_19425 -1.7 -2.2 lipid A biosynthesis lauroyl acyltransferase compare
AO356_07480 -1.7 -3.2 carbamoyl phosphate synthase large subunit compare
AO356_09425 -1.6 -7.2 malate dehydrogenase compare
AO356_16665 -1.6 -9.8 sulfate adenylyltransferase compare
AO356_16185 -1.6 -3.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_01745 -1.6 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_06960 -1.6 -5.5 histidinol-phosphate aminotransferase compare
AO356_17075 -1.6 -1.5 cytochrome C compare
AO356_11340 -1.6 -1.4 NADH-flavin reductase compare
AO356_07005 -1.5 -1.8 ABC transporter ATP-binding protein compare
AO356_16670 -1.5 -7.4 adenylylsulfate kinase compare
AO356_18730 -1.5 -7.2 arginine N-succinyltransferase compare
AO356_08235 -1.5 -7.1 histidine kinase compare
AO356_18805 -1.3 -1.5 magnesium transporter compare
AO356_07540 -1.3 -1.7 SsrA-binding protein compare
AO356_03405 -1.3 -3.4 serine acetyltransferase compare
AO356_19085 -1.3 -6.2 phosphoribosylglycinamide formyltransferase compare
AO356_27210 -1.3 -6.4 hypothetical protein compare
AO356_27230 -1.3 -4.3 hypothetical protein compare
AO356_26210 -1.3 -1.9 histidine kinase compare
AO356_08985 -1.3 -1.3 hypothetical protein compare
AO356_20470 -1.2 -2.3 hypothetical protein compare
AO356_18855 -1.2 -1.8 hypothetical protein compare
AO356_27205 -1.2 -5.7 hypothetical protein compare
AO356_19565 -1.2 -1.8 hypothetical protein compare
AO356_06715 -1.2 -2.5 hypothetical protein compare
AO356_08905 -1.2 -1.6 glycosyl transferase compare
AO356_27250 -1.2 -3.4 hypothetical protein compare
AO356_17020 -1.1 -2.9 cytochrome D ubiquinol oxidase subunit III compare
AO356_04335 -1.1 -5.4 hypothetical protein compare
AO356_19165 -1.1 -3.0 adenosylcobinamide kinase compare
AO356_10060 -1.0 -5.3 ATPase conserved
AO356_22950 -1.0 -1.8 peptidylprolyl isomerase compare
AO356_10330 -1.0 -8.1 threonine dehydratase compare
AO356_09730 -1.0 -4.1 nitrogen regulation protein NR(I) compare
AO356_08585 -1.0 -2.7 50S ribosomal protein L9 compare
AO356_07390 -1.0 -1.1 polyribonucleotide nucleotidyltransferase compare
AO356_17950 -1.0 -5.3 histidine kinase compare
AO356_10185 -1.0 -4.9 glutamate--cysteine ligase compare
AO356_29160 -1.0 -2.0 (2Fe-2S)-binding protein compare
AO356_27245 -1.0 -1.8 hypothetical protein compare
AO356_02190 -1.0 -4.5 hypothetical protein compare
AO356_12025 -1.0 -6.8 pyruvate carboxylase subunit B compare
AO356_02205 -1.0 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_27180 -1.0 -2.4 hypothetical protein compare
AO356_12640 -1.0 -1.6 cytochrome C compare
AO356_04055 -1.0 -1.3 hypothetical protein compare
AO356_03800 -1.0 -1.6 histidine kinase compare
AO356_13685 -1.0 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18000 -0.9 -1.1 FmdB family transcriptional regulator compare
AO356_05630 -0.9 -3.0 LysR family transcriptional regulator compare
AO356_06885 -0.9 -5.1 hypothetical protein compare
AO356_18725 -0.9 -3.7 acetylornithine aminotransferase compare
AO356_07000 -0.9 -2.2 ABC transporter permease compare
AO356_05135 -0.9 -2.3 aldehyde dehydrogenase compare
AO356_04205 -0.8 -2.3 hypothetical protein compare
AO356_12475 -0.8 -5.0 reactive intermediate/imine deaminase compare
AO356_02580 -0.8 -2.8 GntR family transcriptional regulator compare
AO356_01750 -0.8 -2.2 ATP-dependent Clp protease proteolytic subunit compare
AO356_02245 -0.8 -3.5 glycerophosphodiester phosphodiesterase compare
AO356_08280 -0.8 -2.6 oxidoreductase compare
AO356_08270 -0.8 -5.1 precorrin-2 C20-methyltransferase compare
AO356_21410 -0.8 -1.7 SAM-dependent methyltransferase compare
AO356_24795 -0.8 -1.7 type II secretion system protein GspE compare
AO356_28300 -0.8 -1.1 hypothetical protein compare
AO356_08265 -0.8 -3.4 precorrin-3B C17-methyltransferase compare
AO356_19135 -0.8 -1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_26475 -0.8 -1.3 lactoylglutathione lyase compare
AO356_19835 -0.8 -1.5 histidine kinase compare
AO356_18775 -0.8 -2.1 aspartate kinase compare
AO356_03400 -0.8 -3.3 aminotransferase DegT compare
AO356_13445 -0.8 -1.0 dihydroorotase compare
AO356_26110 -0.8 -2.1 sarcosine oxidase subunit alpha compare
AO356_00385 -0.8 -1.3 peptidylprolyl isomerase compare
AO356_09180 -0.8 -2.9 thioesterase compare
AO356_26895 -0.8 -2.0 2Fe-2S ferredoxin compare
AO356_07195 -0.7 -3.4 GntR family transcriptional regulator compare
AO356_27200 -0.7 -2.0 hypothetical protein compare
AO356_27235 -0.7 -3.0 hypothetical protein compare
AO356_27240 -0.7 -2.3 hypothetical protein compare
AO356_14135 -0.7 -5.2 biotin synthase compare
AO356_23595 -0.7 -1.2 short-chain dehydrogenase compare
AO356_17035 -0.7 -2.9 ATPase compare
AO356_16450 -0.7 -2.0 GTP-binding protein compare
AO356_20600 -0.7 -1.9 phage tail protein compare
AO356_03540 -0.7 -3.8 hypothetical protein compare
AO356_02735 -0.7 -1.6 type III secretion regulator InvE compare
AO356_00920 -0.7 -1.5 cold-shock protein compare
AO356_08000 -0.7 -1.9 short-chain dehydrogenase compare
AO356_09185 -0.7 -1.1 hypothetical protein compare
AO356_12735 -0.7 -1.2 diaminopimelate epimerase compare
AO356_15465 -0.7 -3.4 AsnC family transcriptional regulator compare
AO356_12730 -0.7 -2.0 hypothetical protein compare
AO356_08385 -0.7 -1.4 urease subunit beta compare
AO356_06065 -0.7 -1.2 ArsC family transcriptional regulator compare
AO356_08290 -0.7 -2.1 precorrin-6Y C5,15-methyltransferase compare
AO356_05165 -0.7 -5.2 transcriptional regulator compare
AO356_22995 -0.7 -2.0 ArsR family transcriptional regulator compare
AO356_15380 -0.7 -3.5 hypothetical protein compare
AO356_18155 -0.7 -1.1 cold-shock protein compare
AO356_28405 -0.7 -1.9 NADH-dependent FMN reductase compare
AO356_24305 -0.7 -1.9 hypothetical protein compare
AO356_08300 -0.7 -2.3 cobalt-precorrin-6X reductase compare
AO356_21790 -0.7 -0.8 sulfonate ABC transporter ATP-binding protein compare
AO356_14075 -0.7 -1.2 amino acid ABC transporter substrate-binding protein compare
AO356_00525 -0.7 -1.8 cobalamin biosynthesis protein CobE compare
AO356_10585 -0.7 -4.7 hypothetical protein compare
AO356_13965 -0.7 -2.1 hypothetical protein compare
AO356_05080 -0.7 -0.8 peptide deformylase compare
AO356_20520 -0.7 -1.1 oxidoreductase compare
AO356_15260 -0.6 -0.7 dehydratase compare
AO356_09170 -0.6 -1.3 glycosyl transferase compare
AO356_25655 -0.6 -2.4 TetR family transcriptional regulator compare
AO356_23475 -0.6 -2.4 polyketide synthase compare
AO356_00545 -0.6 -4.2 methionine synthase compare
AO356_03070 -0.6 -4.5 histidine kinase compare
AO356_19150 -0.6 -2.5 cobalamin biosynthesis protein CobD compare
AO356_06995 -0.6 -2.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_11585 -0.6 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_22695 -0.6 -2.2 glycerol-3-phosphatase compare
AO356_17105 -0.6 -3.1 hypothetical protein compare
AO356_10695 -0.6 -3.9 diguanylate cyclase compare
AO356_29835 -0.6 -1.4 LuxR family transcriptional regulator compare
AO356_28695 -0.6 -1.6 IclR family transcriptional regulator compare
AO356_11045 -0.6 -4.1 phosphate-binding protein compare
AO356_00575 -0.6 -1.4 SCP-2 family sterol carrier protein compare
AO356_15980 -0.6 -1.9 hypothetical protein compare
AO356_12020 -0.6 -4.1 pyruvate carboxylase subunit A compare
AO356_03455 -0.6 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO356_10610 -0.6 -2.0 polyketide cyclase compare
AO356_13000 -0.6 -3.8 hypothetical protein compare
AO356_24415 -0.6 -2.2 DNA-3-methyladenine glycosylase compare
AO356_22825 -0.6 -1.6 transcriptional regulator compare
AO356_11155 -0.6 -3.9 hypothetical protein compare
AO356_07090 -0.6 -1.5 hypothetical protein compare
AO356_19140 -0.6 -4.1 cobyrinic acid a,c-diamide synthase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium Fumarate dibasic across organisms