Experiment set1IT014 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium Fumarate dibasic carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_19060 +2.8 24.9 (p)ppGpp synthetase compare
AO356_20580 +2.6 13.4 hypothetical protein compare
AO356_12895 +2.0 18.8 polyphosphate kinase compare
AO356_08660 +1.8 13.6 tRNA dimethylallyltransferase compare
AO356_03855 +1.7 13.9 AAA family ATPase compare
AO356_05885 +1.5 11.8 RNA polymerase sigma factor RpoS compare
AO356_08870 +1.5 10.8 polymerase compare
AO356_03775 +1.4 3.2 flagellar assembly protein FliO compare
AO356_15925 +1.4 8.5 ribosomal large subunit pseudouridine synthase D compare
AO356_21435 +1.3 6.9 pseudouridine synthase compare
AO356_09455 +1.3 2.4 ATP-dependent protease subunit HslV compare
AO356_16050 +1.2 4.5 glucose-6-phosphate isomerase compare
AO356_19515 +1.2 2.4 hypothetical protein compare
AO356_10570 +1.2 11.6 large adhesive protein compare
AO356_29730 +1.2 2.7 MarR family transcriptional regulator compare
AO356_08890 +1.2 7.3 glycosyltransferase compare
AO356_10560 +1.1 9.3 ABC transporter compare
AO356_03565 +1.1 7.4 polyphosphate kinase compare
AO356_09565 +1.1 7.8 glucan biosynthesis protein G compare
AO356_10555 +1.1 9.7 hemolysin secretion protein D compare
AO356_09560 +1.1 8.9 glucosyltransferase MdoH compare
AO356_08880 +1.1 6.5 glycosyl transferase compare
AO356_21685 +1.1 2.8 hypothetical protein compare
AO356_27485 +1.1 3.4 hypothetical protein compare
AO356_22150 +1.1 8.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_02290 +1.0 3.3 TetR family transcriptional regulator compare
AO356_29660 +1.0 4.6 IclR family transcriptional regulator compare
AO356_19840 +1.0 6.1 histidine kinase compare
AO356_13145 +1.0 7.8 glutamine synthetase compare
AO356_01960 +1.0 5.1 Presumed portal vertex protein compare
AO356_11670 +1.0 5.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO356_09995 +1.0 6.2 LysR family transcriptional regulator compare
AO356_07055 +0.9 2.1 phosphocarrier protein HPr compare
AO356_15420 +0.9 4.0 hypothetical protein compare
AO356_17575 +0.9 3.0 hypothetical protein compare
AO356_18915 +0.9 5.0 flagellar biosynthesis protein FlgB compare
AO356_18920 +0.9 6.8 flagellar basal-body rod protein FlgC compare
AO356_03375 +0.9 1.5 ExsB family protein compare
AO356_25110 +0.9 2.5 protein DnrP compare
AO356_10580 +0.9 5.9 hypothetical protein compare
AO356_03925 +0.9 5.3 flagellar basal-body rod protein FlgG compare
AO356_18930 +0.9 7.6 flagellar biosynthesis protein FlgE compare
AO356_03740 +0.9 3.5 flagellar biosynthesis protein FlhF compare
AO356_09765 +0.9 2.8 sulfurtransferase compare
AO356_20485 +0.9 6.8 hypothetical protein compare
AO356_03095 +0.9 5.7 protease HtpX compare
AO356_19080 +0.9 6.1 dehydrogenase compare
AO356_07050 +0.8 5.2 glmZ(sRNA)-inactivating NTPase compare
AO356_14305 +0.8 7.8 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_24755 +0.8 1.9 type II secretion system protein GspH compare
AO356_10345 +0.8 3.5 RNA pyrophosphohydrolase compare
AO356_14870 +0.8 4.9 dTDP-4-dehydrorhamnose reductase compare
AO356_18925 +0.8 5.9 flagellar biosynthesis protein FlgD compare
AO356_14310 +0.8 7.2 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_03760 +0.8 4.2 flagellar biosynthetic protein FliR compare
AO356_08930 +0.8 1.9 heptose kinase compare
AO356_03350 +0.8 4.5 glycosyl transferase compare
AO356_03360 +0.8 2.2 hypothetical protein compare
AO356_30000 +0.8 2.3 hypothetical protein compare
AO356_25920 +0.8 4.5 hypothetical protein compare
AO356_08665 +0.8 5.8 DNA mismatch repair protein compare
AO356_07400 +0.8 4.9 pseudouridine synthase compare
AO356_14315 +0.8 7.1 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_25535 +0.8 1.5 hypothetical protein compare
AO356_03770 +0.8 3.8 flagellar biosynthesis protein flip compare
AO356_20850 +0.8 3.9 hypothetical protein compare
AO356_19780 +0.8 6.2 histidine kinase compare
AO356_14355 +0.8 5.6 aminoglycoside phosphotransferase compare
AO356_02305 +0.7 1.8 hypothetical protein compare
AO356_17400 +0.7 2.7 transcriptional regulator compare
AO356_24125 +0.7 2.8 hypothetical protein compare
AO356_02005 +0.7 1.3 hypothetical protein compare
AO356_17800 +0.7 4.3 C4-dicarboxylate ABC transporter compare
AO356_03425 +0.7 5.3 chain-length determining protein compare
AO356_26305 +0.7 2.7 TetR family transcriptional regulator compare
AO356_01500 +0.7 2.9 RpiR family transcriptional regulator compare
AO356_03930 +0.7 3.1 flagellar biosynthesis protein FlgF compare
AO356_24485 +0.7 2.5 SAM-dependent methyltransferase compare
AO356_15765 +0.7 6.1 ATP-dependent protease compare
AO356_01950 +0.7 4.0 hypothetical protein compare
AO356_18900 +0.7 4.6 flagellar biosynthesis protein FlgA compare
AO356_03820 +0.7 5.9 flagellar protein export ATPase FliI compare
AO356_03920 +0.7 5.1 flagellar basal body L-ring protein compare
AO356_03430 +0.7 2.6 hypothetical protein compare
AO356_22710 +0.7 2.0 ArsC family transcriptional regulator compare
AO356_28445 +0.7 1.3 decarboxylase compare
AO356_13890 +0.7 3.1 hypothetical protein compare
AO356_29105 +0.7 1.9 fumarylacetoacetate hydrolase compare
AO356_08705 +0.7 4.7 flagellar motor protein MotB compare
AO356_08315 +0.7 1.9 hypothetical protein compare
AO356_00125 +0.7 1.7 hypothetical protein compare
AO356_25795 +0.7 1.2 transglutaminase compare
AO356_29770 +0.7 2.2 sarcosine oxidase subunit alpha compare
AO356_12705 +0.7 5.6 ammonia channel protein compare
AO356_15440 +0.7 6.0 histidine kinase compare
AO356_22955 +0.7 2.2 ArsR family transcriptional regulator compare
AO356_28160 +0.7 1.6 hypothetical protein compare
AO356_08415 +0.7 3.5 hypothetical protein compare
AO356_08375 +0.7 1.2 acetyltransferase compare
AO356_03835 +0.7 5.0 flagellar M-ring protein FliF compare
AO356_25835 +0.6 2.4 hypothetical protein compare
AO356_01985 +0.6 1.4 head completion/stabilization protein compare
AO356_28090 +0.6 1.0 ABC transporter ATP-binding protein compare
AO356_04565 +0.6 4.5 RNA polymerase subunit sigma compare
AO356_03825 +0.6 3.4 flagellar assembly protein FliH compare
AO356_19790 +0.6 5.8 TonB-dependent receptor compare
AO356_23645 +0.6 1.3 hypothetical protein compare
AO356_15175 +0.6 1.9 hypothetical protein compare
AO356_10015 +0.6 5.6 protein BsmA compare
AO356_10565 +0.6 5.4 channel protein TolC compare
AO356_26450 +0.6 2.2 hypothetical protein compare
AO356_29760 +0.6 3.4 LysR family transcriptional regulator compare
AO356_06745 +0.6 3.2 DNA-binding protein compare
AO356_20475 +0.6 1.5 hypothetical protein compare
AO356_02285 +0.6 2.9 beta-hexosaminidase compare
AO356_04460 +0.6 1.2 sugar translocase compare
AO356_19055 +0.6 2.0 23S rRNA methyltransferase compare
AO356_08640 +0.6 2.4 membrane protease HflC compare
AO356_06685 +0.6 1.1 preprotein translocase subunit YajC compare
AO356_03815 +0.6 3.3 flagellar biogenesis protein compare
AO356_21365 +0.6 2.1 TetR family transcriptional regulator compare
AO356_08465 +0.6 1.7 protein hupE compare
AO356_21030 +0.6 2.3 oxidoreductase compare
AO356_14920 +0.6 1.4 hypothetical protein compare
AO356_01270 +0.6 3.2 (Fe-S)-binding protein compare
AO356_03785 +0.6 4.2 flagellar motor switch protein FliM compare
AO356_03910 +0.6 3.7 flagellar biosynthesis protein FlgJ compare
AO356_03915 +0.6 3.8 flagellar biosynthesis protein FlgI compare
AO356_22370 +0.6 2.5 hypothetical protein compare
AO356_28475 +0.6 1.6 hypothetical protein compare
AO356_11680 +0.6 1.6 chromosome partitioning protein ParB compare
AO356_03765 +0.6 3.2 flagellar biosynthetic protein FliQ compare
AO356_05245 +0.6 2.2 heme oxygenase compare
AO356_03215 +0.6 4.4 hypothetical protein compare
AO356_06730 +0.6 2.6 hypothetical protein compare
AO356_03840 +0.6 3.5 flagellar hook-basal body protein FliE compare
AO356_12905 +0.6 1.6 amino acid ABC transporter ATP-binding protein compare
AO356_27290 +0.6 2.2 cytochrome B compare
AO356_02875 +0.6 2.4 peroxiredoxin compare
AO356_22405 +0.6 1.3 hypothetical protein compare
AO356_21795 +0.6 0.9 PBS lyase compare
AO356_16095 +0.6 3.8 molecular chaperone DnaK compare
AO356_29100 +0.6 1.2 epimerase compare
AO356_03045 +0.6 3.6 LuxR family transcriptional regulator compare
AO356_22325 +0.5 1.8 reactive intermediate/imine deaminase compare
AO356_21765 +0.5 1.4 GntR family transcriptional regulator compare
AO356_15750 +0.5 1.1 hypothetical protein compare
AO356_06615 +0.5 0.9 FeS assembly protein IscX compare
AO356_11420 +0.5 3.7 histidine kinase compare
AO356_20630 +0.5 1.7 Presumed portal vertex protein compare
AO356_24990 +0.5 1.5 4-oxalocrotonate tautomerase compare
AO356_19210 +0.5 1.9 hypothetical protein compare
AO356_03730 +0.5 4.3 flagellar biosynthesis sigma factor compare
AO356_20335 +0.5 1.7 hypothetical protein compare
AO356_12750 +0.5 2.0 DNA mismatch repair protein MutT compare
AO356_03135 +0.5 3.3 LysR family transcriptional regulator compare
AO356_04550 +0.5 1.6 response regulator SirA compare
AO356_18960 +0.5 3.0 hypothetical protein compare
AO356_18850 +0.5 2.4 hypothetical protein compare
AO356_03065 +0.5 2.0 AAA family ATPase compare
AO356_22700 +0.5 3.8 LOG family protein compare
AO356_18890 +0.5 1.4 flagellar biosynthesis protein FlgN compare
AO356_00720 +0.5 3.0 histidine kinase compare
AO356_14130 +0.5 1.6 amidophosphoribosyltransferase compare
AO356_03345 +0.5 3.6 hypothetical protein compare
AO356_17790 +0.5 4.6 alpha-ketoglutarate permease (MHS family) (from data) compare
AO356_18860 +0.5 1.7 hypothetical protein compare
AO356_26615 +0.5 1.4 hypothetical protein compare
AO356_03745 +0.5 4.5 flagellar biosynthesis protein FlhA compare
AO356_14385 +0.5 3.7 spermidine/putrescine ABC transporter ATP-binding protein compare
AO356_24550 +0.5 1.3 hypothetical protein compare
AO356_04535 +0.5 2.9 glycine cleavage system protein R compare
AO356_04700 +0.5 3.4 tRNA-Gly compare
AO356_00660 +0.5 1.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_00170 +0.5 1.7 lytic transglycosylase compare
AO356_16755 +0.5 2.7 MerR family transcriptional regulator compare
AO356_13210 +0.5 3.3 hypothetical protein compare
AO356_07060 +0.5 2.3 divalent cation transporter compare
AO356_17610 +0.5 2.2 preQ0 transporter compare
AO356_08885 +0.5 3.9 hypothetical protein compare
AO356_03845 +0.5 2.8 Fis family transcriptional regulator compare
AO356_26490 +0.5 2.8 serine hydrolase compare
AO356_01825 +0.5 2.1 hypothetical protein compare
AO356_14505 +0.5 1.0 peptidase M23 compare
AO356_24960 +0.5 2.6 hydroxyproline-2-epimerase compare
AO356_10445 +0.5 1.2 serine protease compare
AO356_04420 +0.5 1.8 ribonuclease D compare
AO356_09290 +0.5 1.6 LysR family transcriptional regulator compare
AO356_10350 +0.5 3.8 phosphoenolpyruvate-protein phosphotransferase compare
AO356_08775 +0.5 2.8 hypothetical protein compare
AO356_17785 +0.5 1.0 heme utilization protein compare
AO356_03495 +0.5 1.7 phosphoglycolate phosphatase compare
AO356_08710 +0.5 4.1 flagellar motor stator protein MotA compare
AO356_03865 +0.5 3.4 flagellar export chaperone FliS compare
AO356_18025 +0.5 1.1 ATP-dependent DNA helicase RuvB compare
AO356_20975 +0.5 2.6 hypothetical protein compare
AO356_14240 +0.5 4.0 transcriptional regulator compare
AO356_26245 +0.5 1.3 energy transducer TonB compare
AO356_12610 +0.5 0.5 Fe-S oxidoreductase compare
AO356_28685 +0.5 1.5 betaine-aldehyde dehydrogenase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium Fumarate dibasic across organisms