Experiment set1IT014 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5666 -4.0 -2.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -3.7 -3.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.6 -11.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5665 -3.4 -5.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1534 -3.3 -16.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2879 -3.2 -7.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1533 -3.2 -7.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2303 -3.1 -14.0 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2547 -3.1 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_742 -3.0 -7.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2272 -3.0 -4.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1565 -3.0 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1408 -3.0 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3909 -2.9 -3.4 Cell division inhibitor-related protein compare
Pf1N1B4_6 -2.9 -5.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1831 -2.9 -10.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2282 -2.9 -9.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2384 -2.8 -9.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2338 -2.8 -7.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1067 -2.8 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1624 -2.7 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1626 -2.7 -6.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2545 -2.7 -13.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1830 -2.7 -8.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_350 -2.7 -6.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2548 -2.7 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4065 -2.7 -8.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3506 -2.6 -7.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2878 -2.6 -7.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_847 -2.6 -9.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1434 -2.6 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_12 -2.5 -7.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2858 -2.5 -10.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1617 -2.5 -7.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2112 -2.5 -13.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2549 -2.4 -7.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1315 -2.3 -7.8 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1627 -2.2 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_3129 -2.1 -2.8 Prophage baseplate assembly protein V compare
Pf1N1B4_762 -2.1 -5.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3487 -2.1 -7.4 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate conserved
Pf1N1B4_3153 -2.0 -2.7 hypothetical protein compare
Pf1N1B4_1307 -2.0 -2.4 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1666 -1.9 -5.3 C4-dicarboxylate transport transcriptional regulatory protein conserved
Pf1N1B4_2280 -1.9 -7.8 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1545 -1.8 -8.7 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_2695 -1.8 -2.7 Rare lipoprotein A precursor compare
Pf1N1B4_1611 -1.8 -4.8 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2337 -1.8 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_291 -1.8 -5.3 Major outer membrane lipoprotein I compare
Pf1N1B4_3917 -1.7 -3.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2486 -1.7 -2.7 hypothetical protein compare
Pf1N1B4_3713 -1.7 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_5146 -1.7 -2.8 Chromosome initiation inhibitor compare
Pf1N1B4_4550 -1.7 -3.1 beta-ketoacyl synthase, putative compare
Pf1N1B4_3697 -1.6 -6.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_4858 -1.5 -4.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_1 -1.5 -2.0 Colicin V production protein compare
Pf1N1B4_3812 -1.5 -6.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1906 -1.5 -3.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4029 -1.5 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3833 -1.4 -5.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1544 -1.4 -6.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_1610 -1.4 -2.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_4931 -1.4 -1.8 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_683 -1.4 -3.1 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_652 -1.4 -6.8 Sensory box histidine kinase compare
Pf1N1B4_2210 -1.4 -2.2 Glutamate transport ATP-binding protein compare
Pf1N1B4_3595 -1.4 -2.1 Flagellin protein FlaG compare
Pf1N1B4_2465 -1.4 -2.2 Two-component response regulator CreB compare
Pf1N1B4_2021 -1.4 -1.7 hypothetical protein compare
Pf1N1B4_292 -1.3 -11.7 ErfK/YbiS/YcfS/YnhG family protein compare
Pf1N1B4_5904 -1.3 -2.3 FIG00955320: hypothetical protein compare
Pf1N1B4_1334 -1.3 -2.0 FIG00955840: hypothetical protein compare
Pf1N1B4_4169 -1.3 -3.5 Hydrolases of the alpha/beta superfamily compare
Pf1N1B4_2958 -1.3 -2.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_1566 -1.3 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3093 -1.3 -2.1 Outer membrane protein H precursor compare
Pf1N1B4_3613 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_4108 -1.2 -2.1 Hydrolase, alpha/beta fold family compare
Pf1N1B4_3742 -1.2 -2.2 Oxidoreductase, zinc-binding compare
Pf1N1B4_4612 -1.2 -2.6 FIG00954117: hypothetical protein compare
Pf1N1B4_2939 -1.2 -4.1 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_1625 -1.2 -2.4 FIG00956267: hypothetical protein compare
Pf1N1B4_4041 -1.2 -2.9 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2969 -1.2 -7.7 ATPase, AFG1 family compare
Pf1N1B4_412 -1.2 -2.3 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3368 -1.2 -1.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_1191 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_4494 -1.2 -2.9 hypothetical protein compare
Pf1N1B4_722 -1.2 -1.5 SAM-dependent methyltransferases compare
Pf1N1B4_3325 -1.2 -1.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3525 -1.2 -1.8 hydrolase, alpha/beta fold family compare
Pf1N1B4_644 -1.1 -1.7 Cold shock protein CspC compare
Pf1N1B4_3241 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_5722 -1.1 -2.0 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4028 -1.1 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_3907 -1.1 -2.1 FIG00953287: hypothetical protein compare
Pf1N1B4_1993 -1.1 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_2517 -1.1 -3.2 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf1N1B4_4004 -1.1 -2.3 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_3591 -1.1 -4.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_3685 -1.1 -3.2 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_3081 -1.1 -9.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1570 -1.1 -2.7 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_2870 -1.1 -1.8 Regulator of competence-specific genes compare
Pf1N1B4_4857 -1.1 -3.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2453 -1.1 -1.5 hypothetical protein compare
Pf1N1B4_1370 -1.0 -1.5 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_348 -1.0 -3.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_22 -1.0 -4.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1508 -1.0 -1.8 Lysophospholipid acyltransferase compare
Pf1N1B4_1535 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_1652 -1.0 -5.2 transcriptional regulator, LysR family compare
Pf1N1B4_2872 -1.0 -6.2 FIG00955330: hypothetical protein compare
Pf1N1B4_3518 -1.0 -1.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_5737 -1.0 -2.0 Nitrate/nitrite transporter compare
Pf1N1B4_2487 -1.0 -5.1 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1332 -1.0 -1.9 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_1653 -0.9 -4.3 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2827 -0.9 -2.5 FIG00953980: hypothetical protein compare
Pf1N1B4_5659 -0.9 -5.8 NfuA Fe-S protein maturation compare
Pf1N1B4_273 -0.9 -3.0 putative membrane protein compare
Pf1N1B4_1113 -0.9 -3.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3880 -0.9 -6.0 hypothetical protein compare
Pf1N1B4_5435 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_3130 -0.9 -2.3 Bacteriophage protein GP46 compare
Pf1N1B4_358 -0.9 -4.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2859 -0.9 -6.8 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1785 -0.9 -2.3 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_5619 -0.9 -3.4 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf1N1B4_5560 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_2736 -0.9 -2.1 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_2682 -0.9 -1.6 Antiholin-like protein LrgA compare
Pf1N1B4_2209 -0.9 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4343 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_4627 -0.9 -2.3 FIG00957600: hypothetical protein compare
Pf1N1B4_4040 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2621 -0.9 -1.3 PspA/IM30 family protein compare
Pf1N1B4_4532 -0.9 -1.7 ClpB protein compare
Pf1N1B4_4336 -0.9 -2.0 FMN-dependent NADH-azoreductase compare
Pf1N1B4_4030 -0.9 -2.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1519 -0.8 -2.3 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_4527 -0.8 -2.0 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_35 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_3977 -0.8 -2.5 RNA polymerase sigma-54 factor RpoN compare
Pf1N1B4_5059 -0.8 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_5624 -0.8 -1.9 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_2526 -0.8 -6.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_5383 -0.8 -4.5 hypothetical protein compare
Pf1N1B4_962 -0.8 -4.9 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_2352 -0.8 -3.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1668 -0.8 -3.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2433 -0.8 -1.7 FIG00953108: hypothetical protein compare
Pf1N1B4_4659 -0.8 -1.6 Putative outer membrane lipoprotein compare
Pf1N1B4_2807 -0.8 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_3874 -0.8 -2.4 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_2491 -0.8 -2.2 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1590 -0.8 -3.2 Histidine utilization repressor compare
Pf1N1B4_3879 -0.8 -5.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_4596 -0.8 -1.9 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_3012 -0.8 -2.2 Thiol:disulfide interchange protein DsbC compare
Pf1N1B4_4979 -0.8 -1.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_3864 -0.8 -3.5 Recombination protein RecR compare
Pf1N1B4_5701 -0.8 -2.2 FIG00955602: hypothetical protein compare
Pf1N1B4_2035 -0.8 -2.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_108 -0.8 -1.8 FIG00954456: hypothetical protein compare
Pf1N1B4_1051 -0.8 -3.0 Glutathione peroxidase family protein compare
Pf1N1B4_4585 -0.8 -1.8 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_1279 -0.8 -1.4 Flp pilus assembly protein TadB compare
Pf1N1B4_3625 -0.8 -1.8 Flagellar synthesis regulator FleN compare
Pf1N1B4_5682 -0.8 -1.7 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf1N1B4_1619 -0.8 -4.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_372 -0.8 -1.7 UDP-galactose-lipid carrier transferase (EC 2.-.-.-) compare
Pf1N1B4_1065 -0.8 -3.2 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_3538 -0.8 -1.3 Transcriptional regulator, AraC family compare
Pf1N1B4_6039 -0.7 -3.2 Endonuclease I precursor (EC 3.1.21.1) compare
Pf1N1B4_1462 -0.7 -5.2 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_3709 -0.7 -2.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_3866 -0.7 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_4139 -0.7 -1.3 Transcriptional regulator, MerR family compare
Pf1N1B4_289 -0.7 -6.1 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_1936 -0.7 -2.8 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3454 -0.7 -3.7 Mg/Co/Ni transporter MgtE / CBS domain compare
Pf1N1B4_3132 -0.7 -1.3 FIG121501: Prophage tail protein compare
Pf1N1B4_5834 -0.7 -1.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_241 -0.7 -1.4 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_267 -0.7 -1.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_980 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_4039 -0.7 -3.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1654 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_5948 -0.7 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf1N1B4_3290 -0.7 -1.5 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_4449 -0.7 -2.3 Permeases of the major facilitator superfamily compare
Pf1N1B4_4855 -0.7 -1.6 Response regulator compare
Pf1N1B4_2534 -0.7 -1.2 DnaJ-like protein DjlA compare
Pf1N1B4_92 -0.7 -2.0 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_4297 -0.7 -1.6 FIG00966599: hypothetical protein compare
Pf1N1B4_1159 -0.7 -1.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4886 -0.7 -2.9 Phosphoglucomutase (EC 5.4.2.2) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas fluorescens FW300-N1B4

For carbon source Sodium Fumarate dibasic across organisms