Experiment set1IT014 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Thallium(I) acetate 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS15995 +2.9 3.0 hypothetical protein compare
CA265_RS00490 +1.5 3.5 hypothetical protein compare
CA265_RS14415 +1.4 9.8 pseudouridine synthase compare
CA265_RS10540 +1.4 2.7 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS21330 +1.4 9.4 TetR family transcriptional regulator compare
CA265_RS03515 +1.2 3.5 Fe-S assembly protein IscX compare
CA265_RS24195 +1.2 5.2 TetR family transcriptional regulator compare
CA265_RS14825 +1.1 1.7 outer membrane protein assembly factor BamD compare
CA265_RS08660 +1.0 1.1 glyoxalase compare
CA265_RS04295 +1.0 1.7 transcriptional regulator compare
CA265_RS19665 +0.9 2.7 cysteine methyltransferase compare
CA265_RS10235 +0.9 1.8 hypothetical protein compare
CA265_RS18140 +0.9 5.0 DUF4271 domain-containing protein compare
CA265_RS19575 +0.9 2.1 glycoside hydrolase compare
CA265_RS01975 +0.9 1.5 cell division protein compare
CA265_RS07455 +0.9 1.2 hypothetical protein compare
CA265_RS00605 +0.8 4.1 endonuclease III compare
CA265_RS16105 +0.8 2.0 hypothetical protein compare
CA265_RS24940 +0.8 2.7 hypothetical protein compare
CA265_RS12800 +0.8 2.9 NAD(P)H-dependent oxidoreductase compare
CA265_RS19590 +0.8 1.1 hypothetical protein compare
CA265_RS04000 +0.8 2.5 hypothetical protein compare
CA265_RS15870 +0.8 2.9 hypothetical protein compare
CA265_RS06250 +0.8 0.9 RNA polymerase subunit sigma-70 compare
CA265_RS00270 +0.8 2.5 hypothetical protein compare
CA265_RS20075 +0.8 2.1 hypothetical protein compare
CA265_RS18135 +0.8 1.7 uroporphyrinogen-III synthase compare
CA265_RS11610 +0.8 1.1 RNA-binding protein S4 compare
CA265_RS21425 +0.8 3.1 hypothetical protein compare
CA265_RS16005 +0.8 3.6 hypothetical protein compare
CA265_RS24945 +0.7 2.2 hypothetical protein compare
CA265_RS15895 +0.7 2.1 hypothetical protein compare
CA265_RS03565 +0.7 2.8 phosphonate ABC transporter ATP-binding protein compare
CA265_RS23705 +0.7 2.7 esterase compare
CA265_RS13380 +0.7 1.2 hypothetical protein compare
CA265_RS06325 +0.7 2.3 DNA starvation/stationary phase protection protein compare
CA265_RS24355 +0.7 1.7 transcriptional regulator compare
CA265_RS16485 +0.7 2.2 peptidyl-prolyl cis-trans isomerase compare
CA265_RS24920 +0.7 1.5 hypothetical protein compare
CA265_RS01320 +0.7 1.4 hypothetical protein compare
CA265_RS21580 +0.7 1.9 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS20770 +0.7 2.5 hypothetical protein compare
CA265_RS18260 +0.7 1.0 hypothetical protein compare
CA265_RS02425 +0.6 1.8 GTP cyclohydrolase compare
CA265_RS09140 +0.6 2.1 MerR family transcriptional regulator compare
CA265_RS19985 +0.6 3.3 hypothetical protein compare
CA265_RS14390 +0.6 1.9 hypothetical protein compare
CA265_RS19360 +0.6 1.8 peptidylprolyl isomerase compare
CA265_RS10920 +0.6 2.0 SsrA-binding protein compare
CA265_RS20140 +0.6 1.6 hypothetical protein compare
CA265_RS24815 +0.6 1.6 hypothetical protein compare
CA265_RS11030 +0.6 1.1 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS17025 +0.6 1.3 hypothetical protein compare
CA265_RS05395 +0.6 2.3 heme oxygenase compare
CA265_RS16225 +0.6 1.0 hypothetical protein compare
CA265_RS23525 +0.6 3.5 hypothetical protein compare
CA265_RS23145 +0.6 1.7 hypothetical protein compare
CA265_RS11935 +0.6 2.6 hypothetical protein compare
CA265_RS10615 +0.6 2.3 diacylglycerol kinase compare
CA265_RS21605 +0.6 2.8 sensor histidine kinase compare
CA265_RS05570 +0.6 2.7 hypothetical protein compare
CA265_RS22535 +0.6 2.5 hypothetical protein compare
CA265_RS08295 +0.6 1.7 hypothetical protein compare
CA265_RS08020 +0.6 2.7 hypothetical protein compare
CA265_RS25265 +0.6 1.5 hypothetical protein compare
CA265_RS24710 +0.6 1.5 hypothetical protein compare
CA265_RS01095 +0.6 3.1 transcriptional regulator compare
CA265_RS11250 +0.6 2.4 hypothetical protein compare
CA265_RS16995 +0.6 1.7 hypothetical protein compare
CA265_RS25375 +0.6 2.0 hypothetical protein compare
CA265_RS23235 +0.6 1.3 transcriptional regulator compare
CA265_RS25030 +0.6 1.7 hypothetical protein compare
CA265_RS04425 +0.5 2.0 histidine phosphotransferase compare
CA265_RS20395 +0.5 0.9 hypothetical protein compare
CA265_RS19195 +0.5 1.9 UDP-GlcNAc--UDP-phosphate GlcNAc-1-phosphate transferase compare
CA265_RS24780 +0.5 1.6 nucleoside-diphosphate kinase compare
CA265_RS02675 +0.5 2.2 hypothetical protein compare
CA265_RS17155 +0.5 1.7 glyoxalase compare
CA265_RS10150 +0.5 1.1 cysteine synthase B compare
CA265_RS24900 +0.5 2.8 RNA polymerase subunit sigma-70 compare
CA265_RS04510 +0.5 2.3 hypothetical protein compare
CA265_RS19405 +0.5 2.1 transcriptional regulator compare
CA265_RS19740 +0.5 2.0 gliding motility lipoprotein GldD compare
CA265_RS19935 +0.5 2.1 hypothetical protein compare
CA265_RS06925 +0.5 2.3 hypothetical protein compare
CA265_RS17375 +0.5 2.0 hypothetical protein compare
CA265_RS06595 +0.5 0.9 Arc family DNA binding domain-containing protein compare
CA265_RS13275 +0.5 2.7 redox-regulated ATPase YchF compare
CA265_RS23835 +0.5 2.4 hypothetical protein compare
CA265_RS00025 +0.5 1.1 hypothetical protein compare
CA265_RS18275 +0.5 1.3 pyrophosphatase compare
CA265_RS01150 +0.5 1.7 hypothetical protein compare
CA265_RS18380 +0.5 1.2 ribose 5-phosphate isomerase B compare
CA265_RS18425 +0.5 2.1 sprT domain-containing protein compare
CA265_RS13240 +0.5 1.0 preprotein translocase subunit YajC compare
CA265_RS19615 +0.5 2.1 metal-dependent hydrolase compare
CA265_RS25215 +0.5 1.8 MBL fold hydrolase compare
CA265_RS25185 +0.5 0.7 glycine dehydrogenase (aminomethyl-transferring) compare
CA265_RS06340 +0.5 2.9 hypothetical protein compare
CA265_RS24445 +0.5 1.4 hypothetical protein compare
CA265_RS10510 +0.5 1.7 hypothetical protein compare
CA265_RS23925 +0.5 1.8 endonuclease compare
CA265_RS23665 +0.5 1.8 hypothetical protein compare
CA265_RS13710 +0.5 1.3 hypothetical protein compare
CA265_RS11010 +0.5 2.3 hypothetical protein compare
CA265_RS08060 +0.5 1.2 hypothetical protein compare
CA265_RS10735 +0.5 2.2 Tat (twin-arginine translocation) pathway signal sequence containing protein compare
CA265_RS03450 +0.5 2.0 hypothetical protein compare
CA265_RS03740 +0.5 1.1 hypothetical protein compare
CA265_RS01955 +0.5 2.0 VapC toxin family PIN domain ribonuclease compare
CA265_RS11975 +0.5 1.5 hypothetical protein compare
CA265_RS19945 +0.5 1.9 hypothetical protein compare
CA265_RS19380 +0.5 2.8 beta-carotene 15,15'-monooxygenase compare
CA265_RS00335 +0.5 0.7 hypothetical protein compare
CA265_RS11920 +0.5 0.9 histone H1 compare
CA265_RS22720 +0.5 1.2 hypothetical protein compare
CA265_RS01865 +0.5 2.4 paraquat-inducible protein A compare
CA265_RS04725 +0.5 1.6 SIGNAL peptide protein compare
CA265_RS00015 +0.5 1.8 hypothetical protein compare
CA265_RS03125 +0.5 0.5 hypothetical protein compare
CA265_RS08070 +0.5 0.8 tRNA-Ser compare
CA265_RS18310 +0.5 1.5 thioredoxin family protein compare
CA265_RS25440 +0.5 1.9 capsular biosynthesis protein compare
CA265_RS00655 +0.4 2.2 RNA polymerase subunit sigma-24 compare
CA265_RS23605 +0.4 2.3 alkaline phosphatase compare
CA265_RS10885 +0.4 2.5 thiol reductase thioredoxin compare
CA265_RS08025 +0.4 2.0 hypothetical protein compare
CA265_RS18115 +0.4 2.4 gliding motility protein GldN compare
CA265_RS25275 +0.4 1.7 TIGR00159 family protein compare
CA265_RS03140 +0.4 1.5 hypothetical protein compare
CA265_RS17125 +0.4 1.6 DNA-binding response regulator compare
CA265_RS22190 +0.4 2.1 hypothetical protein compare
CA265_RS14485 +0.4 2.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS22635 +0.4 0.7 phosphoserine phosphatase (EC 3.1.3.3) (from data) compare
CA265_RS19605 +0.4 2.1 serine hydrolase compare
CA265_RS13170 +0.4 1.1 hypothetical protein compare
CA265_RS23660 +0.4 2.5 short-chain dehydrogenase compare
CA265_RS16205 +0.4 1.5 transcriptional regulator compare
CA265_RS21525 +0.4 1.4 hypothetical protein compare
CA265_RS24200 +0.4 1.2 fatty acid hydroxylase compare
CA265_RS19920 +0.4 2.5 MFS transporter compare
CA265_RS23775 +0.4 2.0 protease compare
CA265_RS13150 +0.4 2.9 peptidase M28 compare
CA265_RS06335 +0.4 1.9 hypothetical protein compare
CA265_RS03530 +0.4 1.5 hypothetical protein compare
CA265_RS09650 +0.4 1.1 diaminopimelate decarboxylase compare
CA265_RS14785 +0.4 2.5 pyrroloquinoline quinone biosynthesis protein PqqB compare
CA265_RS23875 +0.4 1.2 hypothetical protein compare
CA265_RS00210 +0.4 1.1 potassium-transporting ATPase subunit F compare
CA265_RS14520 +0.4 1.9 peptidase M48 compare
CA265_RS23915 +0.4 1.9 G-D-S-L family lipolytic protein compare
CA265_RS03605 +0.4 1.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
CA265_RS13485 +0.4 0.9 hypothetical protein compare
CA265_RS18195 +0.4 1.6 maltose O-acetyltransferase compare
CA265_RS16400 +0.4 2.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
CA265_RS05990 +0.4 2.0 hypothetical protein compare
CA265_RS14365 +0.4 2.7 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS03155 +0.4 1.8 hypothetical protein compare
CA265_RS24045 +0.4 2.2 SIMPL domain-containing protein compare
CA265_RS13065 +0.4 1.4 DNA alkylation repair protein compare
CA265_RS10910 +0.4 2.7 iron/manganese transporter compare
CA265_RS12475 +0.4 0.9 hypothetical protein compare
CA265_RS10845 +0.4 2.1 hypothetical protein compare
CA265_RS21885 +0.4 1.2 6-pyruvoyl tetrahydrobiopterin synthase compare
CA265_RS01565 +0.4 1.0 circadian clock protein KaiB compare
CA265_RS13265 +0.4 0.7 DNA-binding protein compare
CA265_RS22530 +0.4 2.0 RDD family protein compare
CA265_RS19680 +0.4 2.1 DNA-binding transcriptional regulator OxyR compare
CA265_RS20265 +0.4 0.8 excinuclease ABC subunit C compare
CA265_RS20765 +0.4 2.0 mobilization protein compare
CA265_RS20525 +0.4 0.5 hypothetical protein compare
CA265_RS00445 +0.4 2.1 alpha/beta hydrolase compare
CA265_RS07755 +0.4 0.6 hypothetical protein compare
CA265_RS00480 +0.4 1.9 (2Fe-2S)-binding protein compare
CA265_RS03360 +0.4 1.8 hypothetical protein compare
CA265_RS12850 +0.4 1.9 3-oxoacyl-ACP synthase compare
CA265_RS20910 +0.4 2.1 mechanosensitive ion channel protein MscS compare
CA265_RS01200 +0.4 1.7 hypothetical protein compare
CA265_RS19815 +0.4 2.4 RlmI/RlmK family 23S rRNA methyltransferase compare
CA265_RS05125 +0.4 2.2 hypothetical protein compare
CA265_RS15800 +0.4 1.0 DNA-binding protein compare
CA265_RS13195 +0.4 0.5 SAM-dependent methyltransferase compare
CA265_RS03445 +0.4 1.8 S-adenosylmethionine decarboxylase compare
CA265_RS10990 +0.4 1.8 hypothetical protein compare
CA265_RS16130 +0.4 1.3 cell division protein FtsX compare
CA265_RS06275 +0.4 2.4 aspartate kinase compare
CA265_RS10505 +0.4 2.1 hypothetical protein compare
CA265_RS15280 +0.4 2.0 glycine C-acetyltransferase compare
CA265_RS22830 +0.4 2.2 permease compare
CA265_RS03415 +0.4 1.4 hypothetical protein compare
CA265_RS20175 +0.4 1.1 thiamine-phosphate diphosphorylase compare
CA265_RS22770 +0.4 2.0 hypothetical protein compare
CA265_RS18205 +0.4 2.2 hypothetical protein compare
CA265_RS01285 +0.4 1.5 phytanoyl-CoA dioxygenase family protein compare
CA265_RS14615 +0.4 1.2 hypothetical protein compare
CA265_RS23510 +0.4 1.3 energy transducer TonB compare
CA265_RS23020 +0.4 2.3 hypothetical protein compare
CA265_RS19100 +0.4 1.3 damage-inducible protein DinB compare
CA265_RS14895 +0.4 1.7 hypothetical protein compare
CA265_RS11600 +0.4 1.9 DUF962 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Thallium(I) acetate across organisms