Experiment set1IT013 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_13405 -5.8 -5.7 methionine biosynthesis protein MetW compare
AO356_21405 -5.8 -4.0 3-isopropylmalate dehydratase compare
AO356_14440 -5.5 -5.4 indole-3-glycerol-phosphate synthase compare
AO356_14100 -5.1 -8.5 malate synthase G compare
AO356_14435 -5.0 -6.9 anthranilate phosphoribosyltransferase compare
AO356_13410 -5.0 -10.7 homoserine O-acetyltransferase compare
AO356_22080 -5.0 -12.8 isocitrate lyase compare
AO356_19225 -4.7 -13.8 histidine kinase conserved
AO356_08635 -4.7 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_20155 -4.6 -7.0 phosphate acyltransferase compare
AO356_09525 -4.6 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_12020 -4.6 -12.8 pyruvate carboxylase subunit A compare
AO356_00555 -4.5 -10.9 sulfite reductase compare
AO356_18695 -4.5 -23.9 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) conserved
AO356_21415 -4.5 -9.7 3-isopropylmalate dehydrogenase compare
AO356_13085 -4.5 -9.9 N-acetylglutamate synthase compare
AO356_21400 -4.5 -7.9 isopropylmalate isomerase compare
AO356_12025 -4.5 -16.3 pyruvate carboxylase subunit B compare
AO356_06965 -4.4 -8.4 histidinol dehydrogenase compare
AO356_18325 -4.4 -11.6 argininosuccinate synthase compare
AO356_22200 -4.3 -8.3 sirohydrochlorin ferrochelatase compare
AO356_12525 -4.3 -10.0 acetylglutamate kinase compare
AO356_19045 -4.3 -13.0 chemotaxis protein CheY compare
AO356_03405 -4.3 -2.9 serine acetyltransferase compare
AO356_05640 -4.3 -5.8 LuxR family transcriptional regulator compare
AO356_11145 -4.2 -13.6 carbonate dehydratase conserved
AO356_18275 -4.2 -14.2 ornithine carbamoyltransferase compare
AO356_09520 -4.2 -5.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_21440 -4.2 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_16075 -4.2 -4.9 Fis family transcriptional regulator compare
AO356_16170 -4.1 -11.2 acetolactate synthase 3 catalytic subunit compare
AO356_10910 -4.1 -8.3 tryptophan synthase subunit alpha compare
AO356_00880 -4.1 -2.8 integration host factor subunit alpha compare
AO356_15395 -4.1 -6.2 magnesium transporter compare
AO356_10350 -4.1 -14.9 phosphoenolpyruvate-protein phosphotransferase compare
AO356_16180 -4.1 -15.9 ketol-acid reductoisomerase compare
AO356_09375 -4.1 -23.3 glutamate synthase compare
AO356_10915 -4.1 -8.8 tryptophan synthase subunit beta compare
AO356_13605 -4.0 -8.1 5,10-methylenetetrahydrofolate reductase compare
AO356_14420 -4.0 -15.7 anthranilate synthase compare
AO356_09810 -4.0 -3.9 imidazole glycerol phosphate synthase subunit HisH compare
AO356_08735 -4.0 -14.4 phosphoserine phosphatase compare
AO356_10300 -4.0 -5.5 3-phosphoglycerate dehydrogenase compare
AO356_02315 -4.0 -4.7 DNA topoisomerase I compare
AO356_06970 -3.9 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21465 -3.9 -4.6 amidophosphoribosyltransferase compare
AO356_15815 -3.8 -2.6 gamma-glutamyl kinase compare
AO356_08585 -3.8 -3.7 50S ribosomal protein L9 compare
AO356_07495 -3.8 -3.7 molecular chaperone DnaJ compare
AO356_16600 -3.8 -2.6 malate:quinone oxidoreductase compare
AO356_14335 -3.8 -5.2 rRNA methyltransferase compare
AO356_02265 -3.8 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_16175 -3.8 -9.1 acetolactate synthase 3 regulatory subunit compare
AO356_19795 -3.8 -2.6 glycerol-3-phosphate dehydrogenase compare
AO356_09815 -3.8 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO356_17890 -3.7 -3.6 H-NS histone compare
AO356_13250 -3.7 -10.4 dihydroxy-acid dehydratase compare
AO356_00355 -3.7 -9.0 chemotaxis protein CheY compare
AO356_09370 -3.6 -11.0 glutamate synthase compare
AO356_02250 -3.6 -8.5 pyridine nucleotide-disulfide oxidoreductase compare
AO356_21470 -3.6 -6.7 O-succinylhomoserine sulfhydrylase compare
AO356_19090 -3.5 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_19060 -3.5 -16.9 (p)ppGpp synthetase compare
AO356_06415 -3.4 -6.4 cytochrome C assembly protein compare
AO356_21330 -3.4 -11.7 aromatic amino acid aminotransferase compare
AO356_15165 -3.4 -3.2 protein cII compare
AO356_08905 -3.4 -2.3 glycosyl transferase compare
AO356_06550 -3.3 -9.2 2-isopropylmalate synthase compare
AO356_00560 -3.3 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_16060 -3.3 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_14295 -3.3 -3.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_09800 -3.2 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_17520 -3.2 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_14430 -3.2 -8.2 anthranilate synthase compare
AO356_16485 -3.1 -9.3 hypothetical protein compare
AO356_10340 -3.1 -14.4 phosphoserine phosphatase compare
AO356_12520 -3.1 -3.0 orotate phosphoribosyltransferase compare
AO356_06685 -3.1 -2.1 preprotein translocase subunit YajC compare
AO356_09780 -3.1 -6.4 peptidase S41 compare
AO356_18245 -3.0 -6.4 DeoR family transcriptional regulator compare
AO356_07915 -3.0 -2.1 exodeoxyribonuclease V subunit beta compare
AO356_12015 -3.0 -11.6 LysR family transcriptional regulator compare
AO356_13685 -3.0 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_11010 -3.0 -13.4 hypothetical protein compare
AO356_01745 -3.0 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_22795 -3.0 -2.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_12780 -3.0 -7.7 argininosuccinate lyase compare
AO356_11610 -3.0 -2.0 glycerol acyltransferase compare
AO356_19085 -2.9 -9.7 phosphoribosylglycinamide formyltransferase compare
AO356_19425 -2.9 -3.2 lipid A biosynthesis lauroyl acyltransferase compare
AO356_15235 -2.8 -8.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase conserved
AO356_16450 -2.8 -4.5 GTP-binding protein compare
AO356_09425 -2.7 -9.5 malate dehydrogenase compare
AO356_05165 -2.7 -15.4 transcriptional regulator compare
AO356_16095 -2.7 -8.7 molecular chaperone DnaK compare
AO356_12895 -2.7 -20.2 polyphosphate kinase compare
AO356_18805 -2.7 -1.8 magnesium transporter compare
AO356_07055 -2.7 -2.4 phosphocarrier protein HPr compare
AO356_20830 -2.7 -4.3 phosphoadenosine phosphosulfate reductase compare
AO356_10585 -2.7 -13.8 hypothetical protein compare
AO356_03415 -2.7 -10.0 oxidoreductase compare
AO356_02175 -2.7 -8.6 transaldolase compare
AO356_05885 -2.6 -12.8 RNA polymerase sigma factor RpoS compare
AO356_10185 -2.6 -7.9 glutamate--cysteine ligase compare
AO356_10170 -2.6 -3.0 chemotaxis protein CheY compare
AO356_10875 -2.6 -18.9 acetyl-CoA hydrolase conserved
AO356_16955 -2.6 -6.2 disulfide bond formation protein B compare
AO356_16185 -2.5 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_07480 -2.5 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_08640 -2.5 -4.1 membrane protease HflC compare
AO356_03400 -2.5 -6.5 aminotransferase DegT compare
AO356_03095 -2.5 -7.6 protease HtpX compare
AO356_11270 -2.5 -9.4 potassium transporter peripheral membrane component compare
AO356_10140 -2.5 -9.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_07545 -2.5 -14.5 transcriptional regulator PdhR compare
AO356_18730 -2.4 -9.4 arginine N-succinyltransferase compare
AO356_11025 -2.4 -5.9 transcriptional regulator PhoU compare
AO356_10345 -2.4 -6.6 RNA pyrophosphohydrolase compare
AO356_15325 -2.4 -2.9 hypothetical protein compare
AO356_09795 -2.4 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO356_14305 -2.3 -16.5 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_08895 -2.3 -1.6 GlcNAc-PI de-N-acetylase compare
AO356_20475 -2.3 -3.0 hypothetical protein compare
AO356_03435 -2.3 -2.9 integration host factor subunit beta compare
AO356_14135 -2.3 -14.4 biotin synthase compare
AO356_14310 -2.3 -14.2 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_10920 -2.2 -9.6 LysR family transcriptional regulator compare
AO356_14315 -2.2 -17.1 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_09460 -2.2 -5.8 ATP-dependent protease ATP-binding subunit HslU compare
AO356_03995 -2.2 -11.1 potassium transporter TrkH compare
AO356_11315 -2.2 -1.5 shikimate dehydrogenase compare
AO356_06005 -2.2 -4.9 zinc metallopeptidase RseP compare
AO356_09455 -2.2 -1.5 ATP-dependent protease subunit HslV compare
AO356_02205 -2.2 -4.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_16870 -2.2 -11.4 benzoate transporter compare
AO356_19420 -2.2 -1.5 septum formation inhibitor compare
AO356_27585 -2.1 -4.7 AcrR family transcriptional regulator compare
AO356_17035 -2.1 -6.5 ATPase compare
AO356_25750 -2.1 -4.0 GntR family transcriptional regulator compare
AO356_17225 -2.1 -8.9 LysR family transcriptional regulator conserved
AO356_11585 -2.1 -5.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_04970 -2.1 -8.1 aspartate-semialdehyde dehydrogenase compare
AO356_18810 -2.1 -5.4 DNA-binding protein compare
AO356_01750 -2.0 -3.9 ATP-dependent Clp protease proteolytic subunit compare
AO356_04560 -2.0 -2.8 serine peptidase compare
AO356_16080 -2.0 -10.7 ATPase compare
AO356_09540 -1.9 -1.3 twin-arginine protein translocation system subunit TatC compare
AO356_07020 -1.9 -2.1 LPS export ABC transporter periplasmic protein LptC compare
AO356_02335 -1.9 -5.0 hypothetical protein compare
AO356_17230 -1.9 -9.9 RND transporter conserved
AO356_02290 -1.9 -3.5 TetR family transcriptional regulator compare
AO356_17020 -1.9 -4.7 cytochrome D ubiquinol oxidase subunit III compare
AO356_03345 -1.9 -9.1 hypothetical protein compare
AO356_24540 -1.9 -6.3 serine/threonine protein phosphatase conserved
AO356_21460 -1.9 -3.3 colicin V production CvpA compare
AO356_00130 -1.9 -5.3 XRE family transcriptional regulator compare
AO356_19050 -1.8 -3.1 cysteine synthase compare
AO356_24550 -1.8 -2.2 hypothetical protein compare
AO356_17245 -1.8 -7.3 hypothetical protein conserved
AO356_13415 -1.8 -3.6 hypothetical protein compare
AO356_04575 -1.8 -8.1 RNA polymerase subunit sigma compare
AO356_08645 -1.8 -4.3 hypothetical protein compare
AO356_02815 -1.7 -6.4 ribonuclease activity regulator protein RraA conserved
AO356_17235 -1.7 -10.2 fusaric acid resistance protein conserved
AO356_07005 -1.7 -2.7 ABC transporter ATP-binding protein compare
AO356_12515 -1.7 -3.2 exodeoxyribonuclease III compare
AO356_14140 -1.7 -11.1 8-amino-7-oxononanoate synthase compare
AO356_02905 -1.7 -7.1 amino acid ABC transporter substrate-binding protein compare
AO356_01630 -1.7 -6.1 anti-sigma factor compare
AO356_07390 -1.7 -1.7 polyribonucleotide nucleotidyltransferase compare
AO356_00605 -1.7 -4.3 TetR family transcriptional regulator compare
AO356_17240 -1.7 -7.8 required for acetate efflux, together with NodT, MFP and FUSC proteins (AO356_17230, AO356_17245, and AO356_17235) (from data) conserved
AO356_13475 -1.6 -5.7 glutathione synthetase compare
AO356_03365 -1.6 -3.9 UDP-N-acetylglucosamine 2-epimerase compare
AO356_16085 -1.6 -5.3 MFS transporter compare
AO356_08955 -1.6 -7.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_12990 -1.6 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
AO356_14155 -1.6 -7.0 dethiobiotin synthetase compare
AO356_11395 -1.5 -7.3 hypothetical protein compare
AO356_18020 -1.5 -3.7 ATP-dependent DNA helicase RuvA compare
AO356_16545 -1.5 -5.7 FAD-dependent oxidoreductase compare
AO356_08215 -1.5 -5.8 tRNA-dihydrouridine synthase B compare
AO356_19335 -1.5 -9.6 peptidase S41 compare
AO356_10165 -1.5 -6.6 ATPase compare
AO356_17070 -1.5 -1.4 cytochrome B compare
AO356_08985 -1.5 -1.5 hypothetical protein compare
AO356_17080 -1.5 -8.4 stringent starvation protein A compare
AO356_27245 -1.5 -3.0 hypothetical protein compare
AO356_03200 -1.5 -6.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_07000 -1.5 -3.4 ABC transporter permease compare
AO356_08660 -1.5 -6.7 tRNA dimethylallyltransferase compare
AO356_13570 -1.5 -7.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_18010 -1.5 -6.8 hypothetical protein compare
AO356_17950 -1.4 -7.1 histidine kinase compare
AO356_06960 -1.4 -5.3 histidinol-phosphate aminotransferase compare
AO356_15420 -1.4 -2.8 hypothetical protein compare
AO356_14145 -1.4 -5.7 transporter compare
AO356_17485 -1.4 -4.1 elongation factor 4 compare
AO356_08875 -1.4 -2.9 toluene tolerance protein compare
AO356_26360 -1.4 -2.0 enoyl-CoA hydratase compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N2C3

For carbon source Potassium acetate across organisms