Experiment set1IT013 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Ampicillin sodium salt 15.6 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0951 -4.3 -4.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4740 -3.9 -6.0 thiazole-phosphate synthase compare
Psyr_1544 -3.9 -4.5 SirA-like protein compare
Psyr_4340 -3.8 -6.3 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.7 -4.3 septum site-determining protein MinC compare
Psyr_4683 -3.2 -4.8 dethiobiotin synthase compare
Psyr_4686 -3.1 -5.4 8-amino-7-oxononanoate synthase compare
Psyr_4341 -3.0 -7.9 thiamine-phosphate diphosphorylase compare
Psyr_3008 -2.9 -5.8 Undecaprenyl-diphosphatase compare
Psyr_4203 -2.8 -2.6 SsrA-binding protein compare
Psyr_4687 -2.7 -5.6 biotin synthase compare
Psyr_0383 -2.6 -3.0 Twin-arginine translocation protein TatB compare
Psyr_1556 -2.3 -3.3 hypothetical protein compare
Psyr_0303 -2.2 -4.7 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_0259 -2.2 -4.3 Osmolarity sensor protein envZ compare
Psyr_4684 -2.2 -3.1 biotin synthesis protein BioC compare
Psyr_0454 -2.1 -4.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0565 -2.0 -6.2 Protein of unknown function UPF0126 compare
Psyr_1373 -2.0 -2.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1408 -2.0 -3.3 Holliday junction endonuclease RuvC compare
Psyr_4091 -2.0 -4.2 8-oxo-dGTPase compare
Psyr_0475 -1.9 -3.7 Protein of unknown function YGGT compare
Psyr_0831 -1.8 -2.9 Two-component response regulator CbrB compare
Psyr_0826 -1.8 -5.8 glucose-6-phosphate isomerase compare
Psyr_4581 -1.8 -3.4 anthranilate synthase, component II compare
Psyr_2854 -1.8 -5.5 conserved hypothetical protein compare
Psyr_1907 -1.7 -2.8 GTP cyclohydrolase I compare
Psyr_0487 -1.7 -3.2 glutathione synthase compare
Psyr_5135 -1.6 -2.0 Protein of unknown function DUF37 compare
Psyr_5132 -1.5 -2.9 Glucose-inhibited division protein A subfamily compare
Psyr_2855 -1.5 -3.1 methionine synthase (B12-independent) compare
Psyr_1780 -1.5 -3.0 transcriptional regulator, TetR family compare
Psyr_3262 -1.5 -2.6 dnaK suppressor protein, putative compare
Psyr_0918 -1.5 -8.5 ABC transporter compare
Psyr_3644 -1.5 -3.0 prephenate dehydrogenase compare
Psyr_0575 -1.4 -3.5 protease FtsH subunit HflC compare
Psyr_0917 -1.4 -6.9 ABC-2 compare
Psyr_3425 -1.4 -2.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_1751 -1.4 -3.7 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_2080 -1.4 -5.4 aminodeoxychorismate synthase, subunit I compare
Psyr_4622 -1.4 -3.7 Nucleotidyl transferase compare
Psyr_4822 -1.4 -2.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2823 -1.3 -2.2 hypothetical protein compare
Psyr_4991 -1.3 -1.9 hypothetical protein compare
Psyr_2346 -1.3 -3.9 conserved hypothetical protein compare
Psyr_1138 -1.3 -2.8 GCN5-related N-acetyltransferase compare
Psyr_1688 -1.3 -2.4 Protein of unknown function DUF1315 compare
Psyr_1410 -1.3 -4.1 Holliday junction DNA helicase RuvB compare
Psyr_5133 -1.3 -3.1 tRNA modification GTPase trmE compare
Psyr_3427 -1.3 -1.8 conserved hypothetical protein compare
Psyr_2071 -1.3 -1.3 outer membrane lipoprotein OprI compare
Psyr_0571 -1.3 -2.8 tRNA isopentenyltransferase compare
Psyr_1555 -1.3 -4.4 Cobyrinic acid a,c-diamide synthase compare
Psyr_3179 -1.3 -2.5 DNA translocase FtsK compare
Psyr_0849 -1.2 -7.4 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3342 -1.2 -2.6 conserved hypothetical protein compare
Psyr_2980 -1.2 -3.0 UDP-glucose pyrophosphorylase compare
Psyr_1816 -1.2 -2.9 transcriptional regulator, GntR family compare
Psyr_4362 -1.2 -2.5 Rare lipoprotein A compare
Psyr_1733 -1.2 -2.8 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_3795 -1.2 -2.5 hypothetical protein compare
Psyr_0373 -1.2 -2.3 CDS compare
Psyr_4893 -1.2 -1.8 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0579 -1.1 -7.6 RNAse R compare
Psyr_0976 -1.1 -3.4 Malate:quinone-oxidoreductase compare
Psyr_1588 -1.1 -2.3 Putative exonuclease, RdgC compare
Psyr_1749 -1.1 -4.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_2264 -1.1 -1.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_1650 -1.1 -1.9 aminodeoxychorismate lyase apoprotein compare
Psyr_3013 -1.1 -1.4 magnesium chelatase subunit ChlD compare
Psyr_3176 -1.1 -2.6 camphor resistance protein CrcB compare
Psyr_1935 -1.1 -4.4 Protein of unknown function DUF796 compare
Psyr_4424 -1.0 -5.2 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_2502 -1.0 -2.6 conserved hypothetical protein compare
Psyr_4087 -1.0 -1.8 Protein of unknown function DUF520 compare
Psyr_3198 -1.0 -1.9 NADH dehydrogenase subunit B compare
Psyr_1910 -1.0 -3.7 VacJ-like lipoprotein compare
Psyr_4136 -1.0 -1.8 BolA-like protein compare
Psyr_5065 -1.0 -5.2 ATP-dependent DNA helicase UvrD compare
Psyr_3213 -1.0 -2.1 Propeptide, PepSY amd peptidase M4 compare
Psyr_0680 -1.0 -2.9 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_0827 -1.0 -2.8 pantothenate synthetase compare
Psyr_0393 -1.0 -3.1 Protein of unknown function DUF971 compare
Psyr_0574 -1.0 -3.4 protease FtsH subunit HflK compare
Psyr_4015 -1.0 -2.0 conserved domain protein compare
Psyr_4940 -1.0 -1.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_3701 -1.0 -1.7 thioredoxin, putative compare
Psyr_1121 -0.9 -1.2 6-phosphogluconolactonase compare
Psyr_0377 -0.9 -4.8 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0255 -0.9 -1.0 glutamate-cysteine ligase compare
Psyr_4316 -0.9 -2.5 conserved hypothetical protein compare
Psyr_4335 -0.9 -1.9 transcriptional regulator, AsnC family compare
Psyr_4089 -0.9 -3.7 PAS compare
Psyr_1748 -0.9 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4051 -0.9 -1.4 transcriptional regulator, ArsR family compare
Psyr_0276 -0.9 -2.0 zinc uptake regulation protein, putative compare
Psyr_0179 -0.9 -2.5 Protein of unknown function DUF1289 compare
Psyr_4055 -0.9 -2.8 conserved domain protein compare
Psyr_2428 -0.9 -2.6 GCN5-related N-acetyltransferase compare
Psyr_4476 -0.9 -3.2 dTDP-4-dehydrorhamnose reductase compare
Psyr_2676 -0.9 -2.4 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4682 -0.9 -1.7 conserved hypothetical protein compare
Psyr_4460 -0.9 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0529 -0.9 -2.0 Glycosyl transferase, group 1 compare
Psyr_1250 -0.9 -1.7 conserved hypothetical protein compare
Psyr_3315 -0.8 -1.2 conserved hypothetical protein compare
Psyr_3337 -0.8 -2.3 gluconate kinase, SKI family compare
Psyr_3954 -0.8 -3.1 GTP-binding protein LepA compare
Psyr_1930 -0.8 -1.8 hypothetical protein compare
Psyr_2501 -0.8 -1.3 Hemerythrin compare
Psyr_3640 -0.8 -1.8 conserved hypothetical protein compare
Psyr_3581 -0.8 -3.3 ribosomal large subunit pseudouridine synthase B compare
Psyr_2540 -0.8 -1.5 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2765 -0.8 -1.9 conserved domain protein compare
Psyr_5067 -0.8 -3.2 conserved hypothetical protein compare
Psyr_1140 -0.8 -2.1 Disulfide bond formation protein DsbB compare
Psyr_2141 -0.8 -2.1 hypothetical protein compare
Psyr_0907 -0.8 -1.9 conserved hypothetical protein compare
Psyr_3896 -0.8 -1.6 BFD-like [2Fe-2S]-binding region compare
Psyr_2135 -0.8 -2.0 molybdenum cofactor guanylyltransferase compare
Psyr_2226 -0.8 -2.9 formyltetrahydrofolate deformylase compare
Psyr_1885 -0.8 -1.5 hypothetical protein compare
Psyr_0832 -0.8 -4.1 Two-component sensor kinase CbrA compare
Psyr_0941 -0.8 -3.6 Conserved hypothetical protein 92 compare
Psyr_3090 -0.8 -1.9 hypothetical protein compare
Psyr_0037 -0.8 -2.2 Protein of unknown function DUF1458 compare
Psyr_3673 -0.8 -1.4 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1919 -0.7 -3.5 hypothetical protein compare
Psyr_1294 -0.7 -2.1 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0532 -0.7 -2.9 conserved hypothetical protein compare
Psyr_4029 -0.7 -4.0 pyruvate kinase compare
Psyr_3208 -0.7 -1.0 NADH dehydrogenase subunit M compare
Psyr_1418 -0.7 -2.1 Radical SAM compare
Psyr_3116 -0.7 -2.5 transcriptional regulator, CdaR family compare
Psyr_0268 -0.7 -1.3 DSBA oxidoreductase compare
Psyr_2546 -0.7 -2.8 DMT superfamily multiple drug (quaternary ammonium compounds) efflux pump compare
Psyr_4727 -0.7 -3.0 glutathione S-transferase, putative compare
Psyr_3905 -0.7 -3.5 glycerol kinase compare
Psyr_1975 -0.7 -2.3 Integrase, catalytic region compare
Psyr_2247 -0.7 -2.2 ABC transporter compare
Psyr_4402 -0.7 -2.4 [LSU ribosomal protein L11P]-lysine N-methyltransferase compare
Psyr_0444 -0.7 -0.9 Malonate decarboxylase delta subunit compare
Psyr_0378 -0.7 -3.8 Glycosyl transferase, family 2 compare
Psyr_4416 -0.7 -2.0 precorrin-8X methylmutase compare
Psyr_1329 -0.7 -2.4 conserved hypothetical protein compare
Psyr_1468 -0.7 -3.1 hypothetical protein compare
Psyr_4050 -0.7 -1.4 Protein of unknown function DUF479 compare
Psyr_2182 -0.7 -2.9 hypothetical protein compare
Psyr_1638 -0.7 -1.6 RNAse E compare
Psyr_0235 -0.7 -3.0 D-amino acid dehydrogenase small subunit compare
Psyr_1371 -0.7 -3.4 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_2449 -0.7 -1.9 Response regulator receiver compare
Psyr_1111 -0.7 -0.8 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_2391 -0.7 -3.6 Protein of unknown function DUF182 compare
Psyr_4512 -0.7 -3.2 putative phage-related protein compare
Psyr_1801 -0.7 -2.2 1-aminocyclopropane-1-carboxylate deaminase compare
Psyr_4884 -0.7 -2.5 Rhodanese-like protein compare
Psyr_4454 -0.7 -1.2 HupE/UreJ protein compare
Psyr_1929 -0.7 -2.5 hypothetical protein compare
Psyr_0202 -0.7 -3.8 transcriptional regulator, LysR family compare
Psyr_3674 -0.7 -1.6 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_2462 -0.7 -2.5 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4716 -0.7 -2.2 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_1965 -0.7 -2.3 Twin-arginine translocation pathway signal compare
Psyr_4141 -0.7 -2.7 ABC transporter compare
Psyr_2804 -0.7 -2.0 hypothetical protein compare
Psyr_1417 -0.7 -2.9 TPR repeat protein compare
Psyr_4437 -0.7 -2.6 hypothetical protein compare
Psyr_3521 -0.7 -1.8 transcriptional regulator, LysR family compare
Psyr_1596 -0.7 -1.3 Helix-turn-helix motif protein compare
Psyr_2860 -0.6 -1.6 hypothetical protein compare
Psyr_2837 -0.6 -4.2 hypothetical protein compare
Psyr_3193 -0.6 -1.1 Transcription factor jumonji, jmjC compare
Psyr_3321 -0.6 -1.4 transcriptional regulator, LysR family compare
Psyr_3867 -0.6 -1.0 hypothetical protein compare
Psyr_0533 -0.6 -2.6 conserved hypothetical protein compare
Psyr_3084 -0.6 -1.9 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_5130 -0.6 -3.7 chromosome segregation ATPase compare
Psyr_0033 -0.6 -2.2 tryptophan synthase, alpha chain compare
Psyr_3462 -0.6 -1.0 conserved hypothetical protein compare
Psyr_4455 -0.6 -1.8 conserved hypothetical protein compare
Psyr_0215 -0.6 -4.0 Exodeoxyribonuclease III xth compare
Psyr_2209 -0.6 -1.9 ABC transporter, substrate-binding protein, aliphatic sulfonate compare
Psyr_2347 -0.6 -1.6 hypothetical protein compare
Psyr_1308 -0.6 -1.6 Protein-glutamate methylesterase compare
Psyr_0735 -0.6 -1.4 Peptidase S24, S26A and S26B compare
Psyr_0234 -0.6 -3.6 transcriptional regulator, AsnC family compare
Psyr_3028 -0.6 -1.1 Protein of unknown function DUF28 compare
Psyr_3341 -0.6 -2.6 hypothetical protein compare
Psyr_3419 -0.6 -2.2 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3934 -0.6 -1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_1424 -0.6 -1.7 Peptidase S24, S26A and S26B compare
Psyr_2799 -0.6 -2.5 hypothetical protein compare
Psyr_3739 -0.6 -1.1 conserved hypothetical protein compare
Psyr_2095 -0.6 -2.6 Conserved TM helix compare
Psyr_3548 -0.6 -2.6 Glutathione S-transferase, N-terminal compare
Psyr_2592 -0.6 -2.5 transport system permease protein compare
Psyr_2642 -0.6 -2.1 hypothetical protein compare
Psyr_0919 -0.6 -3.9 Chromosome segregation ATPase-like protein compare
Psyr_3692 -0.6 -0.8 conserved hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Ampicillin sodium salt across organisms