Experiment set1IT013 for Sinorhizobium meliloti 1021

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02766 -8.8 -10.5 tryptophan synthase subunit beta compare
SMc01843 -8.7 -8.5 5,10-methylenetetrahydrofolate reductase compare
SMc02245 -8.5 -5.8 dihydroorotate dehydrogenase 2 compare
SMc00235 -8.4 -5.8 anthranilate phosphoribosyltransferase compare
SMc02899 -8.2 -9.8 prephenate dehydratase compare
SMc00917 -8.2 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02767 -8.1 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01801 -8.0 -4.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01494 -8.0 -12.3 phosphoserine phosphatase compare
SMc02569 -8.0 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc04045 -7.8 -5.4 dihydroxy-acid dehydratase compare
SMc03797 -7.6 -10.4 homoserine O-succinyltransferase compare
SMc02725 -7.5 -12.6 anthranilate synthase compare
SMc02717 -7.5 -11.5 2-isopropylmalate synthase compare
SMc00614 -7.4 -7.2 phosphoribosylglycinamide formyltransferase compare
SMc00236 -7.4 -7.2 Indole-3-glycerol phosphate synthase compare
SMc01431 -7.2 -12.9 acetolactate synthase 3 catalytic subunit compare
SMc04405 -7.1 -11.8 3-isopropylmalate dehydrogenase compare
SMc00711 -7.0 -6.4 cyclohexadienyl dehydrogenase compare
SMc00494 -7.0 -2.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00640 -6.9 -11.6 phosphoserine aminotransferase compare
SMc02217 -6.9 -6.7 O-succinylhomoserine sulfhydrylase compare
SMc00918 -6.8 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
SMc02572 -6.8 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
SMc00495 -6.8 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc04028 -6.8 -19.5 glutamate synthase compare
SMc00412 -6.7 -4.7 orotidine 5'-phosphate decarboxylase compare
SMc03776 -6.7 -4.6 gamma-glutamyl kinase compare
SMc02765 -6.7 -11.3 tryptophan synthase subunit alpha compare
SMc01726 -6.6 -6.5 acetylglutamate kinase compare
SMc03112 -6.5 -18.0 B12-dependent methionine synthase compare
SMc03823 -6.5 -11.7 isopropylmalate isomerase large subunit compare
SMc00993 -6.4 -11.5 phosphoribosylamine--glycine ligase compare
SMc03826 -6.3 -4.4 argininosuccinate synthase compare
SMc01004 -6.3 -8.6 phosphoribosyl-AMP cyclohydrolase compare
SMc01361 -6.2 -7.4 dihydroorotase compare
SMc04088 -6.2 -9.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc04002 -6.1 -8.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00293 -6.1 -12.5 homoserine dehydrogenase compare
SMc04026 -6.1 -7.3 glutamate synthase compare
SMc00493 -6.0 -9.1 phosphoribosylformylglycinamidine synthase I compare
SMc03895 -5.9 -20.7 pyruvate carboxylase compare
SMc00092 -5.9 -14.4 phosphoadenosine phosphosulfate reductase compare
SMc01360 -5.9 -5.7 aspartate carbamoyltransferase catalytic subunit compare
SMc00615 -5.9 -8.3 phosphoribosylaminoimidazole synthetase compare
SMc00488 -5.9 -14.4 phosphoribosylformylglycinamidine synthase II compare
SMc00815 -5.8 -3.6 inosine 5'-monophosphate dehydrogenase compare
SMc00554 -5.8 -11.2 amidophosphoribosyltransferase compare
SMc03229 -5.8 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02570 -5.8 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02755 -5.6 -6.7 S-adenosyl-L-homocysteine hydrolase compare
SMc03979 -5.6 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02137 -5.5 -7.4 ornithine carbamoyltransferase compare
SMc03070 -5.5 -11.2 glucose-6-phosphate 1-dehydrogenase compare
SMc02165 -5.5 -11.6 orotate phosphoribosyltransferase compare
SMc02123 -5.4 -5.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02166 -5.3 -10.7 dihydroorotase compare
SMc02124 -5.3 -15.4 nitrite reductase compare
SMc03763 -5.2 -3.6 cytosine-specific methyltransferase compare
SMc03777 -5.2 -7.7 gamma-glutamyl phosphate reductase compare
SMc01215 -5.1 -3.5 carbamoyl phosphate synthase large subunit compare
SMc00090 -5.0 -11.6 sulfate adenylyltransferase compare
SM_b21175 -5.0 -4.8 phosphate uptake ABC transporter permease compare
SMc01569 -5.0 -2.4 carbamoyl phosphate synthase small subunit compare
SMc02574 -5.0 -7.5 imidazoleglycerol-phosphate dehydratase compare
SMc01881 -5.0 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00131 -4.9 -15.4 transcriptional regulator compare
SM_b21177 -4.8 -9.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc01880 -4.7 -4.6 pantoate--beta-alanine ligase compare
SMc01054 -4.7 -6.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00091 -4.7 -13.8 sulfate adenylyltransferase compare
SMc04001 -4.7 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SM_b21174 -4.7 -7.8 phosphate uptake ABC transporter permease compare
SMc01770 -4.7 -2.0 serine hydroxymethyltransferase compare
SMc03978 -4.5 -4.4 transketolase compare
SM_b21176 -4.5 -6.7 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00017 -4.5 -2.2 homoserine kinase compare
SMa1635 -4.4 -2.7 hypothetical protein compare
SMc03795 -4.4 -2.2 isopropylmalate isomerase small subunit compare
SMc00876 -4.1 -9.6 ATP-binding MRP protein compare
SMc02138 -4.1 -6.5 acetylornithine transaminase compare
SMc02707 -4.0 -6.4 hypothetical protein compare
SMc03100 -3.9 -2.5 hypothetical protein compare
SMc02425 -3.9 -6.3 transcriptional regulator compare
SMc00641 -3.8 -4.9 D-3-phosphoglycerate dehydrogenase compare
SMc04346 -3.8 -4.4 ketol-acid reductoisomerase compare
SMc00294 -3.8 -15.9 aminotransferase compare
SMc02307 -3.8 -9.9 histidinol dehydrogenase compare
SMc01053 -3.7 -5.4 siroheme synthase compare
SMc04259 -3.7 -5.2 ABC transporter for D-Cellobiose and D-Salicin, periplasmic substrate-binding protein (from data) conserved
SMc04256 -3.5 -14.3 ABC transporter for D-Cellobiose and D-Salicin, ATPase component (from data) conserved
SMc04257 -3.4 -13.7 ABC transporter for D-Cellobiose and D-Salicin, permease component 1 (from data) conserved
SMc04258 -3.1 -12.0 ABC transporter for D-Cellobiose and D-Salicin, permease component 2 (from data) conserved
SMc00963 -3.1 -7.6 hypothetical protein compare
SMc00726 -3.0 -1.5 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03981 -2.9 -5.3 phosphoglycerate kinase compare
SMc03924 -2.9 -11.8 glycogen synthase compare
SMc00492 -2.9 -1.7 hypothetical protein compare
SMc02835 -2.8 -8.0 glucokinase compare
SMc01578 -2.7 -14.0 aspartate aminotransferase compare
SMc04005 -2.7 -8.0 pyruvate kinase compare
SMc01441 -2.6 -6.3 membrane bound protease compare
SMc02983 -2.6 -6.2 ornithine, DAP, or arginine decarboxylase compare
SMc00334 -2.6 -3.4 cytidylate kinase compare
SMc03068 -2.6 -12.1 phosphogluconate dehydratase compare
SMc00451 -2.6 -7.6 processing protease compare
SMc01124 -2.5 -10.0 PII uridylyl-transferase compare
SMc01206 -2.5 -2.3 queuine tRNA-ribosyltransferase compare
SMc03069 -2.5 -3.0 6-phosphogluconolactonase compare
SMc01440 -2.4 -6.0 hydrolase serine protease transmembrane protein compare
SMc02640 -2.4 -6.8 UDP-glucuronic acid epimerase compare
SMc00414 -2.3 -11.7 hypothetical protein compare
SMc02246 -2.2 -1.3 hypothetical protein compare
SMc01430 -2.2 -4.4 acetolactate synthase 3 regulatory subunit compare
SMc04296 -2.1 -2.0 cell division protein FtsZ compare
SMc02172 -2.0 -10.6 transcriptional regulator compare
SMc01207 -2.0 -3.5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc01852 -2.0 -10.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00295 -2.0 -1.6 hypothetical protein compare
SMc01028 -2.0 -10.5 phosphopyruvate hydratase compare
SMc00982 -2.0 -5.0 dioxygenase compare
SMc02833 -1.8 -2.2 penicillin-insensitive murein endopeptidase compare
SMc02753 -1.8 -2.1 PTS system transporter subunit IIA compare
SMc03161 -1.7 -10.1 oxidoreductase compare
SMc00619 -1.7 -2.6 hypothetical protein compare
SMc04253 -1.6 -10.6 oxidoreductase compare
SMc03162 -1.6 -8.2 3-ketoglucose dehydratase (from data) compare
SMc00450 -1.6 -3.9 protoheme IX farnesyltransferase compare
SMc01842 -1.6 -1.6 methyltransferase transcription regulator protein compare
SMa0882 -1.6 -1.2 hypothetical protein compare
SMc01501 -1.5 -4.7 mannitol 2-dehydrogenase compare
SMc02451 -1.5 -1.4 hypothetical protein compare
SMc03065 -1.5 -8.4 ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) (from data) compare
SMc03062 -1.4 -5.2 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) (from data) compare
SMc03153 -1.4 -3.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMa0789 -1.4 -3.1 GntR family transcriptional regulator compare
SMc02407 -1.4 -7.5 hypothetical protein compare
SMa1056 -1.4 -1.6 transcriptional regulator compare
SMc02058 -1.4 -3.5 YAJC protein compare
SMc01183 -1.3 -1.7 LexA repressor compare
SMc02434 -1.3 -3.4 hypothetical protein compare
SMc03279 -1.3 -2.5 transposase number 2 for insertion sequence ISRM28 compare
SMc02838 -1.3 -3.5 phosphoglyceromutase compare
SMc00838 -1.2 -6.4 hypothetical protein compare
SMc02115 -1.2 -1.0 hypothetical protein compare
SMa1765 -1.2 -1.2 hypothetical protein compare
SMc01845 -1.2 -1.7 transglycosylase transmembrane protein compare
SMc00914 -1.2 -2.9 oxidoreductase compare
SMc02724 -1.2 -3.6 hypothetical protein compare
SMc03063 -1.2 -8.3 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data) compare
SMc04254 -1.2 -3.4 hypothetical protein compare
SMc04348 -1.2 -1.2 transcriptional regulator compare
SMc00427 -1.2 -2.4 peptide chain release factor RF-3 protein compare
SMc03061 -1.2 -8.1 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data) compare
SMc03878 -1.1 -3.6 acetoacetyl-CoA reductase compare
SMc00302 -1.1 -3.3 hypothetical protein compare
SMc02659 -1.1 -4.0 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc00053 -1.1 -1.0 monovalent cation/H+ antiporter subunit C compare
SMc03980 -1.1 -3.5 hypothetical protein compare
SM_b20773 -1.1 -3.7 GntR family transcriptional regulator compare
SMc02641 -1.1 -3.6 UDP-glucose 6-dehydrogenase compare
SMc04000 -1.1 -0.7 hypothetical protein compare
SMc02861 -1.1 -1.6 phosphate transporter compare
SM_b21131 -1.0 -5.0 sulfate ABC transporter permease compare
SM_b21133 -1.0 -7.2 sulfate ABC transporter substrate-binding protein compare
SMc03863 -1.0 -2.2 50S ribosomal protein L19 compare
SMc02573 -1.0 -1.2 hypothetical protein compare
SMc02141 -1.0 -3.4 phosphate transporter PhoU compare
SMc01147 -1.0 -2.5 coproporphyrinogen III oxidase compare
SMc03899 -1.0 -0.9 hypothetical protein compare
SMc03839 -1.0 -1.6 hypothetical protein compare
SMc04255 -1.0 -6.6 beta-mannosidase compare
SMc01368 -1.0 -4.7 transport transmembrane protein compare
SMc02234 -1.0 -2.9 hypothetical protein compare
SMc00321 -1.0 -4.4 tRNA pseudouridine synthase B compare
SMc02812 -0.9 -2.3 hypothetical protein compare
SMc00012 -0.9 -1.3 cytochrome C oxidase assembly protein compare
SMc02228 -0.9 -4.4 acetyl-CoA acetyltransferase compare
SMc00709 -0.9 -2.7 hypothetical protein compare
SMc03051 -0.9 -3.6 flagellar biosynthesis repressor FlbT compare
SMa5010 -0.9 -0.9 hypothetical protein compare
SMc01337 -0.9 -1.4 hypothetical protein compare
SMc00981 -0.9 -4.1 ferredoxin protein compare
SM_b20483 -0.9 -5.8 catabolite repressor protein compare
SMc02362 -0.9 -2.5 cytochrome c-type biogenesis protein CcmE compare
SM_b20955 -0.9 -3.6 endo-beta-1,3-1,4-glycanase compare
SMc01043 -0.9 -4.3 nitrogen assimilation regulatory protein compare
SMc02048 -0.9 -3.7 glycine cleavage system protein H compare
SM_b20105 -0.9 -1.6 transcriptional regulator compare
SM_b20509 -0.9 -2.2 transcriptional regulator compare
SMc02049 -0.9 -6.8 glycine dehydrogenase compare
SMa1201 -0.8 -1.7 hypothetical protein compare
SMc04213 -0.8 -1.8 diacylglycerol kinase compare
SM_b21132 -0.8 -2.5 sulfate ABC transporter permease compare
SMc02047 -0.8 -4.3 glycine cleavage system aminomethyltransferase T compare
SMc01007 -0.8 -1.1 hypothetical protein compare
SMc03993 -0.8 -3.8 hypothetical protein compare
SMc00353 -0.8 -1.6 transmembrane protein compare
SMc00710 -0.8 -3.5 histidinol-phosphate aminotransferase compare
SMc04121 -0.8 -1.6 uracil phosphoribosyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Cellobiose in Sinorhizobium meliloti 1021

For carbon source D-Cellobiose across organisms