Experiment set1IT013 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Sisomicin sulfate salt 0.035 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS32740 -3.8 -1.6 enoyl-CoA hydratase compare
RR42_RS06255 -3.7 -2.7 lipoprotein compare
RR42_RS02775 -3.4 -2.7 molecular chaperone SurA compare
RR42_RS03560 -3.4 -3.9 hypothetical protein compare
RR42_RS12040 -3.4 -10.5 MFS transporter compare
RR42_RS04325 -3.3 -4.1 membrane protein compare
RR42_RS18855 -3.1 -4.2 preprotein translocase compare
RR42_RS02440 -3.1 -3.2 membrane protein compare
RR42_RS17865 -3.0 -7.3 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS19885 -2.9 -2.0 aminoglycoside transporter compare
RR42_RS18270 -2.9 -4.9 murein transglycosylase compare
RR42_RS02810 -2.9 -3.3 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS15795 -2.8 -6.1 spore coat protein compare
RR42_RS15785 -2.8 -9.7 glycosyl transferase family 28 compare
RR42_RS12315 -2.7 -2.2 transcriptional regulator compare
RR42_RS17560 -2.7 -8.1 Fur family transcriptional regulator compare
RR42_RS15470 -2.6 -2.1 biopolymer transporter ExbD compare
RR42_RS07555 -2.6 -2.8 potassium transporter Kup compare
RR42_RS15800 -2.5 -4.5 aldo/keto reductase compare
RR42_RS13130 -2.5 -2.6 membrane protein compare
RR42_RS15790 -2.4 -7.3 aminotransferase class III compare
RR42_RS05420 -2.3 -3.1 membrane protein compare
RR42_RS33250 -2.3 -7.2 tyrosine protein kinase compare
RR42_RS18850 -2.3 -2.6 preprotein translocase subunit TatC compare
RR42_RS15745 -2.2 -8.1 group1 glycosyl transferase compare
RR42_RS04410 -2.2 -9.3 cyanophycin synthetase compare
RR42_RS33255 -2.2 -3.3 protein-tyrosine phosphatase compare
RR42_RS04405 -2.2 -5.9 cyanophycin synthetase compare
RR42_RS04415 -2.2 -10.7 ABC transporter compare
RR42_RS15410 -2.2 -5.4 membrane protein compare
RR42_RS19090 -2.2 -1.8 cytochrome C compare
RR42_RS15740 -2.2 -1.9 hypothetical protein compare
RR42_RS15770 -2.1 -5.9 hypothetical protein compare
RR42_RS18840 -2.1 -4.8 2-alkenal reductase compare
RR42_RS04700 -2.1 -1.5 ribonuclease G compare
RR42_RS36110 -2.1 -4.5 membrane protein compare
RR42_RS13125 -2.1 -3.8 pyrrolo-quinoline quinone compare
RR42_RS33260 -2.0 -7.1 multidrug MFS transporter compare
RR42_RS09015 -2.0 -3.9 trigger factor compare
RR42_RS04420 -2.0 -4.6 required for efflux of an amino acid polymer (from data) compare
RR42_RS20655 -2.0 -5.0 multidrug transporter compare
RR42_RS19895 -1.9 -2.1 elongation factor GreAB compare
RR42_RS15775 -1.9 -4.7 N-acetylneuraminate synthase compare
RR42_RS15525 -1.9 -1.5 hypothetical protein compare
RR42_RS13935 -1.8 -3.0 hemin transporter compare
RR42_RS33240 -1.8 -11.1 GDP-L-fucose synthase compare
RR42_RS21505 -1.8 -1.8 hypothetical protein compare
RR42_RS14055 -1.8 -3.0 elongation factor 4 compare
RR42_RS07615 -1.8 -2.5 3-ketoacyl-ACP reductase compare
RR42_RS15475 -1.8 -5.6 protein tolQ compare
RR42_RS23515 -1.7 -3.6 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS20440 -1.7 -1.6 histidine kinase compare
RR42_RS31435 -1.7 -1.4 hypothetical protein compare
RR42_RS07605 -1.7 -5.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS19685 -1.7 -2.1 thiosulfate oxidation carrier complex protein SoxZ compare
RR42_RS25755 -1.6 -2.5 IclR family transcriptional regulator compare
RR42_RS19750 -1.6 -1.4 MBL fold metallo-hydrolase compare
RR42_RS33235 -1.6 -5.4 GDP-mannose 4,6-dehydratase compare
RR42_RS17620 -1.6 -4.3 phosphatidylglycerophosphatase compare
RR42_RS01255 -1.6 -5.6 lauroyl acyltransferase compare
RR42_RS21380 -1.5 -1.7 cupin compare
RR42_RS02420 -1.5 -1.1 SAM-dependent methyltransferase compare
RR42_RS06250 -1.5 -1.9 dihydrodipicolinate synthase compare
RR42_RS07310 -1.5 -4.9 hypothetical protein compare
RR42_RS06630 -1.5 -1.7 integration host factor subunit alpha compare
RR42_RS11180 -1.5 -3.9 peptidylprolyl isomerase compare
RR42_RS09300 -1.5 -1.8 aromatic ring-opening dioxygenase LigB compare
RR42_RS15825 -1.5 -7.6 capsular biosynthesis protein compare
RR42_RS15455 -1.4 -4.1 membrane protein compare
RR42_RS02785 -1.4 -1.8 dimethyladenosine transferase compare
RR42_RS26200 -1.4 -1.7 hypothetical protein compare
RR42_RS01820 -1.4 -3.6 peptidase S41 compare
RR42_RS15710 -1.4 -5.1 LPS biosynthesis protein compare
RR42_RS01260 -1.4 -4.5 lauroyl acyltransferase compare
RR42_RS15015 -1.4 -1.0 exodeoxyribonuclease VII small subunit compare
RR42_RS15415 -1.4 -2.5 membrane protein compare
RR42_RS15730 -1.4 -6.1 sugar transferase compare
RR42_RS17355 -1.4 -0.9 hypothetical protein compare
RR42_RS22590 -1.4 -0.9 organic hydroperoxide resistance protein compare
RR42_RS24930 -1.3 -1.0 AraC family transcriptional regulator compare
RR42_RS19005 -1.3 -4.5 3-dehydroquinate synthase compare
RR42_RS01785 -1.3 -2.0 PTS fructose transporter subunit IIA compare
RR42_RS20650 -1.3 -6.3 multidrug efflux RND transporter permease subunit compare
RR42_RS09045 -1.3 -7.1 peptidylprolyl isomerase compare
RR42_RS33210 -1.3 -4.0 teichoic acid biosynthesis protein compare
RR42_RS06245 -1.3 -2.6 SAM-dependent methyltransferase compare
RR42_RS36105 -1.2 -2.1 MarR family transcriptional regulator compare
RR42_RS02705 -1.2 -1.8 Holliday junction DNA helicase RuvA compare
RR42_RS25640 -1.2 -1.7 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS06240 -1.2 -1.8 tryptophan--tRNA ligase compare
RR42_RS33245 -1.2 -4.9 mannose-1-phosphate guanyltransferase compare
RR42_RS21220 -1.2 -2.0 iron transporter FeoB compare
RR42_RS14395 -1.2 -1.6 entericidin compare
RR42_RS26540 -1.2 -0.9 3-phosphoglycerate dehydrogenase compare
RR42_RS23595 -1.2 -2.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS03415 -1.2 -3.4 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS15070 -1.2 -4.3 membrane protein compare
RR42_RS21605 -1.2 -1.4 S-adenosylhomocysteine hydrolase compare
RR42_RS13025 -1.2 -2.3 hypothetical protein compare
RR42_RS11580 -1.2 -1.4 hypothetical protein compare
RR42_RS28935 -1.2 -5.5 hypothetical protein compare
RR42_RS17610 -1.1 -6.1 malate dehydrogenase compare
RR42_RS24790 -1.1 -1.1 LysR family transcriptional regulator compare
RR42_RS00715 -1.1 -2.0 ferritin compare
RR42_RS13165 -1.1 -5.2 membrane protein compare
RR42_RS10590 -1.1 -1.7 hypothetical protein compare
RR42_RS29785 -1.1 -2.9 hypothetical protein compare
RR42_RS02405 -1.1 -3.7 membrane protein compare
RR42_RS18420 -1.1 -4.2 hypothetical protein compare
RR42_RS17395 -1.1 -5.0 S-adenosylmethionine tRNA ribosyltransferase compare
RR42_RS14805 -1.1 -3.0 glutamyl-Q tRNA(Asp) ligase compare
RR42_RS32520 -1.0 -2.5 cytochrome C compare
RR42_RS12285 -1.0 -3.0 ABC transporter permease compare
RR42_RS33215 -1.0 -5.7 transferase compare
RR42_RS15735 -1.0 -4.6 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS07565 -1.0 -4.8 transcription accessory protein compare
RR42_RS35875 -1.0 -6.1 UDP-galactose-4-epimerase compare
RR42_RS13190 -1.0 -3.6 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS02935 -1.0 -2.3 malonate decarboxylase subunit epsilon compare
RR42_RS03170 -1.0 -3.0 hypothetical protein compare
RR42_RS01795 -1.0 -6.0 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS24605 -1.0 -5.2 TetR family transcriptional regulator compare
RR42_RS28720 -1.0 -1.5 hypothetical protein compare
RR42_RS22950 -1.0 -3.9 cytochrome C550 compare
RR42_RS15895 -1.0 -4.5 uroporphyrinogen III methyltransferase compare
RR42_RS30410 -1.0 -1.0 hypothetical protein compare
RR42_RS06335 -1.0 -1.1 cyclophilin compare
RR42_RS13910 -1.0 -3.2 glutamate racemase compare
RR42_RS32235 -1.0 -3.9 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS15970 -1.0 -1.5 lipoprotein compare
RR42_RS22065 -1.0 -2.3 type VI secretion protein compare
RR42_RS08750 -1.0 -3.1 hemerythrin compare
RR42_RS17665 -1.0 -1.1 chorismate lyase compare
RR42_RS15715 -1.0 -4.5 glycosyl transferase compare
RR42_RS28850 -1.0 -1.7 transcriptional regulator compare
RR42_RS33205 -1.0 -6.1 UDP-glucose 6-dehydrogenase compare
RR42_RS32975 -1.0 -1.6 LysR family transcriptional regulator compare
RR42_RS18385 -0.9 -2.2 hypothetical protein compare
RR42_RS23880 -0.9 -1.5 hypothetical protein compare
RR42_RS23640 -0.9 -2.5 flagellar biosynthesis protein FliS compare
RR42_RS04710 -0.9 -2.6 50S rRNA methyltransferase compare
RR42_RS06485 -0.9 -4.7 chorismate synthase compare
RR42_RS28885 -0.9 -3.5 membrane protein compare
RR42_RS34650 -0.9 -3.3 LacI family transcriptional regulator compare
RR42_RS15705 -0.9 -3.6 glycosyl transferase family 1 compare
RR42_RS09580 -0.9 -0.9 hypothetical protein compare
RR42_RS35850 -0.9 -3.2 hypothetical protein compare
RR42_RS15465 -0.9 -1.3 TonB-dependent receptor compare
RR42_RS18830 -0.9 -3.0 large-conductance mechanosensitive channel compare
RR42_RS03145 -0.9 -5.4 peptidase M48 compare
RR42_RS37005 -0.9 -2.6 IclR family transcriptional regulator compare
RR42_RS26935 -0.9 -1.8 farnesyl-diphosphate farnesyltransferase compare
RR42_RS03085 -0.9 -0.9 RecX family transcriptional regulator compare
RR42_RS24535 -0.9 -1.0 tRNA-Asn compare
RR42_RS15460 -0.9 -2.6 translocation protein TolB compare
RR42_RS01290 -0.9 -2.9 thiamine biosynthesis protein ThiC compare
RR42_RS26485 -0.9 -2.0 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS17400 -0.9 -4.1 queuine tRNA-ribosyltransferase compare
RR42_RS00525 -0.9 -1.8 MarR family transcriptional regulator compare
RR42_RS03020 -0.9 -1.2 MarR family transcriptional regulator compare
RR42_RS21595 -0.9 -1.3 IclR family transcriptional regulator compare
RR42_RS27885 -0.9 -2.9 2-keto-4-pentenoate hydratase compare
RR42_RS14845 -0.9 -1.7 MarR family transcriptional regulator compare
RR42_RS18310 -0.9 -1.2 indole-3-glycerol-phosphate synthase compare
RR42_RS36010 -0.9 -1.9 peptidase compare
RR42_RS11765 -0.9 -2.5 protein RnfH compare
RR42_RS02750 -0.9 -4.0 mannose-1-phosphate guanylyltransferase compare
RR42_RS05360 -0.9 -1.1 membrane protein compare
RR42_RS27120 -0.9 -1.1 amino acid ABC transporter permease compare
RR42_RS01485 -0.9 -1.5 phosphonate transporter compare
RR42_RS22275 -0.9 -1.4 hypothetical protein compare
RR42_RS14080 -0.9 -4.9 RNA polymerase sigma factor RpoE compare
RR42_RS04475 -0.9 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16580 -0.9 -3.1 hypothetical protein compare
RR42_RS36270 -0.9 -5.0 patatin compare
RR42_RS20825 -0.9 -2.1 addiction module antitoxin compare
RR42_RS15755 -0.9 -1.9 acetyltransferase compare
RR42_RS20145 -0.9 -2.7 CoA-binding protein compare
RR42_RS29790 -0.8 -1.8 hypothetical protein compare
RR42_RS36665 -0.8 -4.7 hypothetical protein compare
RR42_RS23380 -0.8 -1.5 flagellar basal body protein FliL compare
RR42_RS35725 -0.8 -1.3 flagellar biosynthesis protein FlgB compare
RR42_RS15420 -0.8 -1.7 hypothetical protein compare
RR42_RS08795 -0.8 -2.2 molybdopterin-guanine dinucleotide biosynthesis protein B compare
RR42_RS00830 -0.8 -3.4 cell division protein FtsN compare
RR42_RS04980 -0.8 -1.2 hypothetical protein compare
RR42_RS31530 -0.8 -1.8 histidine kinase compare
RR42_RS33690 -0.8 -1.2 phosphate acetyltransferase compare
RR42_RS15035 -0.8 -3.0 ZIP zinc transporter compare
RR42_RS36495 -0.8 -2.4 enoyl-CoA hydratase compare
RR42_RS02380 -0.8 -3.3 FAD-linked oxidase compare
RR42_RS04180 -0.8 -1.2 methyltransferase compare
RR42_RS23140 -0.8 -0.9 peptidylprolyl isomerase compare
RR42_RS07800 -0.8 -2.3 IclR family transcriptional regulator compare
RR42_RS29315 -0.8 -3.5 AcrR family transcriptional regulator compare
RR42_RS25200 -0.8 -3.2 TetR family transcriptional regulator compare
RR42_RS32240 -0.8 -4.0 ABC transporter compare
RR42_RS06875 -0.8 -0.8 hypothetical protein compare
RR42_RS21435 -0.8 -2.0 hypothetical protein compare
RR42_RS10415 -0.8 -0.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Sisomicin sulfate salt in Cupriavidus basilensis FW507-4G11

For stress Sisomicin sulfate salt across organisms