Experiment set1IT013 for Burkholderia phytofirmans PsJN

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -8.1 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33915 -8.0 -5.6 isopropylmalate isomerase compare
BPHYT_RS17400 -7.7 -7.5 anthranilate phosphoribosyltransferase compare
BPHYT_RS17670 -7.5 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS10100 -7.2 -5.0 dihydroxy-acid dehydratase compare
BPHYT_RS33835 -6.8 -10.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16245 -6.7 -6.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33865 -6.7 -9.1 tryptophan synthase alpha chain compare
BPHYT_RS14915 -6.5 -9.9 phosphoserine aminotransferase compare
BPHYT_RS17690 -6.4 -14.2 imidazole glycerol phosphate synthase compare
BPHYT_RS18320 -6.3 -12.9 orotate phosphoribosyltransferase compare
BPHYT_RS03150 -6.3 -18.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33875 -6.3 -9.2 tryptophan synthase subunit alpha compare
BPHYT_RS17890 -6.2 -3.9 shikimate kinase compare
BPHYT_RS13705 -6.2 -4.3 chorismate synthase compare
BPHYT_RS06555 -6.1 -12.4 ketol-acid reductoisomerase compare
BPHYT_RS17675 -5.9 -3.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS15915 -5.9 -13.1 ornithine carbamoyltransferase compare
BPHYT_RS06900 -5.7 -9.6 aspartate aminotransferase compare
BPHYT_RS17855 -5.7 -18.3 glutamate synthase compare
BPHYT_RS06545 -5.6 -14.2 acetolactate synthase compare
BPHYT_RS17685 -5.6 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33900 -5.5 -12.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS02590 -5.3 -10.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33645 -5.3 -8.1 homoserine kinase compare
BPHYT_RS09515 -5.3 -6.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14190 -5.2 -10.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12530 -5.2 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17405 -5.2 -1.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS06610 -5.2 -2.7 triosephosphate isomerase compare
BPHYT_RS14845 -5.1 -5.0 cysteine synthase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14910 -5.1 -8.9 chorismate mutase compare
BPHYT_RS14895 -5.1 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08960 -5.0 -3.1 threonine synthase compare
BPHYT_RS33880 -4.9 -12.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15920 -4.9 -10.9 argininosuccinate synthase compare
BPHYT_RS01595 -4.8 -10.8 homoserine O-acetyltransferase compare
BPHYT_RS08955 -4.5 -6.9 homoserine dehydrogenase compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS02610 -4.5 -5.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16840 -4.5 -3.1 transketolase compare
BPHYT_RS16255 -4.5 -5.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS12055 -4.4 -18.9 phosphoenolpyruvate synthase compare
BPHYT_RS17885 -4.4 -7.3 3-dehydroquinate synthase compare
BPHYT_RS16835 -4.3 -7.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06405 -4.2 -5.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS16270 -4.2 -5.5 phosphoglycerate kinase compare
BPHYT_RS09500 -4.2 -7.8 glucose-6-phosphate isomerase compare
BPHYT_RS16905 -4.1 -6.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS05960 -4.0 -6.2 endoribonuclease L-PSP compare
BPHYT_RS33840 -4.0 -8.8 amidophosphoribosyltransferase compare
BPHYT_RS17390 -4.0 -14.0 anthranilate synthase subunit I compare
BPHYT_RS12985 -3.9 -4.2 amino acid acetyltransferase compare
BPHYT_RS17715 -3.8 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS08565 -3.7 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS17700 -3.7 -3.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03535 -3.6 -9.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17395 -3.6 -3.7 anthranilate synthase subunit II compare
BPHYT_RS33920 -3.5 -10.2 type II citrate synthase compare
BPHYT_RS03725 -3.3 -2.9 serine hydroxymethyltransferase compare
BPHYT_RS15670 -3.0 -6.1 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS16880 -2.9 -3.4 malic enzyme compare
BPHYT_RS02905 -2.8 -18.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS06990 -2.8 -2.4 membrane protein compare
BPHYT_RS04725 -2.7 -13.0 sulfite reductase compare
BPHYT_RS12465 -2.7 -3.6 inositol monophosphatase compare
BPHYT_RS15620 -2.7 -4.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04955 -2.6 -3.5 methionyl-tRNA synthetase compare
BPHYT_RS23840 -2.6 -4.1 methyltransferase compare
BPHYT_RS04820 -2.5 -5.3 LysR family transcriptional regulator compare
BPHYT_RS12845 -2.5 -15.9 ATPase compare
BPHYT_RS18705 -2.5 -2.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS36400 -2.4 -1.7 hypothetical protein compare
BPHYT_RS17380 -2.3 -8.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS08125 -2.1 -8.7 ATPase compare
BPHYT_RS14195 -2.1 -2.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS15075 -2.1 -3.7 dihydrokaempferol 4-reductase compare
BPHYT_RS02865 -2.1 -3.1 hypothetical protein compare
BPHYT_RS14855 -2.0 -3.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03625 -2.0 -8.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS17520 -2.0 -5.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS13220 -2.0 -7.3 phosphomethylpyrimidine synthase compare
BPHYT_RS04285 -2.0 -2.7 rhamnosyltransferase compare
BPHYT_RS12935 -2.0 -9.3 chemotaxis protein CheY compare
BPHYT_RS02520 -2.0 -7.2 Fis family transcriptional regulator conserved
BPHYT_RS08765 -1.9 -1.5 ABC transporter ATP-binding protein compare
BPHYT_RS04720 -1.9 -6.5 transcriptional regulator compare
BPHYT_RS15415 -1.9 -12.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12840 -1.8 -3.7 pyruvate dehydrogenase compare
BPHYT_RS02515 -1.8 -11.3 ATPase conserved
BPHYT_RS02510 -1.8 -8.6 C4-dicarboxylate ABC transporter conserved
BPHYT_RS01590 -1.8 -6.5 methionine biosynthesis protein MetW compare
BPHYT_RS06985 -1.7 -7.3 fumarate hydratase compare
BPHYT_RS08950 -1.7 -4.4 aminotransferase compare
BPHYT_RS16975 -1.7 -6.6 shikimate 5-dehydrogenase compare
BPHYT_RS04745 -1.6 -5.1 sulfate adenylyltransferase compare
BPHYT_RS17530 -1.6 -5.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04965 -1.6 -8.1 ATP-binding protein compare
BPHYT_RS04730 -1.6 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS12990 -1.6 -3.1 iron transporter compare
BPHYT_RS10095 -1.6 -3.6 integrase compare
BPHYT_RS06045 -1.5 -8.8 transaldolase compare
BPHYT_RS23875 -1.5 -1.4 sugar ABC transporter ATP-binding protein compare
BPHYT_RS30085 -1.4 -1.8 hypothetical protein compare
BPHYT_RS29255 -1.4 -4.4 aspartate carbamoyltransferase compare
BPHYT_RS03645 -1.4 -2.1 tRNA dimethylallyltransferase compare
BPHYT_RS13605 -1.4 -1.2 tRNA-Pro compare
BPHYT_RS06685 -1.4 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS15710 -1.4 -2.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS13390 -1.4 -1.3 IclR family transcriptional regulator compare
BPHYT_RS20840 -1.3 -2.8 beta-lactamase compare
BPHYT_RS12940 -1.3 -6.0 signal transduction histidine kinase compare
BPHYT_RS08850 -1.3 -1.4 transcriptional regulator compare
BPHYT_RS06400 -1.3 -3.8 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS02690 -1.3 -7.6 protoheme IX farnesyltransferase compare
BPHYT_RS19115 -1.3 -2.9 acyl carrier protein compare
BPHYT_RS03570 -1.3 -5.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS10135 -1.3 -1.3 hypothetical protein compare
BPHYT_RS16470 -1.2 -4.9 DeoR faimly transcriptional regulator compare
BPHYT_RS36275 -1.2 -1.0 hypothetical protein compare
BPHYT_RS34430 -1.2 -1.2 2-keto-4-pentenoate hydratase compare
BPHYT_RS12615 -1.2 -1.6 dihydrodipicolinate synthase compare
BPHYT_RS18340 -1.2 -1.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS09145 -1.1 -7.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS15615 -1.1 -3.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS03495 -1.1 -4.2 hypothetical protein compare
BPHYT_RS06375 -1.1 -4.4 ribonuclease compare
BPHYT_RS13645 -1.1 -9.2 threonine--tRNA ligase compare
BPHYT_RS14900 -1.1 -2.4 prephenate dehydrogenase compare
BPHYT_RS03235 -1.1 -2.6 enoyl-CoA hydratase compare
BPHYT_RS12150 -1.1 -7.8 PII uridylyl-transferase compare
BPHYT_RS04010 -1.1 -1.4 glycosyl transferase compare
BPHYT_RS06975 -1.1 -2.5 glutamate racemase compare
BPHYT_RS04370 -1.1 -2.0 glycosyl transferase compare
BPHYT_RS03830 -1.1 -1.5 hypothetical protein compare
BPHYT_RS26025 -1.1 -1.1 hypothetical protein compare
BPHYT_RS26185 -1.0 -1.5 thioesterase compare
BPHYT_RS07570 -1.0 -1.4 hypothetical protein compare
BPHYT_RS25335 -1.0 -1.0 hypothetical protein compare
BPHYT_RS01630 -1.0 -2.1 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS16815 -1.0 -1.3 ureidoglycolate hydrolase compare
BPHYT_RS02540 -1.0 -1.6 hypothetical protein compare
BPHYT_RS11825 -1.0 -1.4 cytosine deaminase compare
BPHYT_RS08805 -1.0 -3.4 sulfate ABC transporter ATP-binding protein compare
BPHYT_RS21350 -1.0 -1.8 ADP-glucose pyrophosphorylase compare
BPHYT_RS25820 -1.0 -1.8 sugar ABC transporter compare
BPHYT_RS33580 -1.0 -2.8 geranyltranstransferase compare
BPHYT_RS08335 -1.0 -1.3 hypothetical protein compare
BPHYT_RS17035 -1.0 -2.5 sugar kinase compare
BPHYT_RS22455 -1.0 -1.2 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS14920 -1.0 -2.1 hypothetical protein compare
BPHYT_RS33905 -1.0 -0.5 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06410 -1.0 -1.4 transcriptional regulator compare
BPHYT_RS21950 -1.0 -1.7 RND transporter compare
BPHYT_RS05215 -0.9 -4.5 DNA-binding protein compare
BPHYT_RS23155 -0.9 -1.1 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS02685 -0.9 -4.5 cytochrome C oxidase subunit I compare
BPHYT_RS08235 -0.9 -1.1 nucleoprotein, Hfg, host factor I compare
BPHYT_RS03400 -0.9 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS30845 -0.9 -2.3 polyketide cyclase compare
BPHYT_RS08790 -0.9 -2.6 ABC transporter permease compare
BPHYT_RS07935 -0.9 -1.5 Rrf2 family transcriptional regulator compare
BPHYT_RS19325 -0.9 -2.1 glycine cleavage system H protein compare
BPHYT_RS17075 -0.9 -3.3 ABC transporter permease compare
BPHYT_RS31910 -0.9 -1.6 hypothetical protein compare
BPHYT_RS04335 -0.9 -1.1 membrane protein compare
BPHYT_RS12725 -0.9 -6.8 regulator compare
BPHYT_RS04290 -0.9 -0.9 glycosyl transferase family 2 compare
BPHYT_RS10740 -0.9 -1.3 LuxR family transcriptional regulator compare
BPHYT_RS02310 -0.9 -6.3 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS04740 -0.9 -3.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS26300 -0.9 -1.3 ATP-dependent DNA ligase compare
BPHYT_RS14380 -0.9 -3.2 elongation factor 4 compare
BPHYT_RS32115 -0.9 -2.0 hypothetical protein compare
BPHYT_RS16345 -0.9 -2.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS17525 -0.8 -1.4 glutaredoxin compare
BPHYT_RS28860 -0.8 -1.0 haloacid dehalogenase compare
BPHYT_RS13105 -0.8 -2.6 LacI family transcription regulator compare
BPHYT_RS11040 -0.8 -1.1 GntR family transcriptional regulator compare
BPHYT_RS30890 -0.8 -1.3 hypothetical protein compare
BPHYT_RS13160 -0.8 -1.2 membrane protein compare
BPHYT_RS19585 -0.8 -3.9 cobalamin biosynthesis protein CobW compare
BPHYT_RS04015 -0.8 -1.6 glycosyl transferase compare
BPHYT_RS08060 -0.8 -4.3 ribosome maturation factor RimP compare
BPHYT_RS12455 -0.8 -1.7 serine O-acetyltransferase compare
BPHYT_RS20095 -0.8 -0.8 transcriptional regulator compare
BPHYT_RS01280 -0.8 -1.7 hypothetical protein compare
BPHYT_RS32240 -0.8 -1.0 chromosome replication initiation inhibitor protein compare
BPHYT_RS15015 -0.8 -1.3 ArsR family transcriptional regulator compare
BPHYT_RS14755 -0.8 -2.6 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS25585 -0.8 -1.6 membrane protein compare
BPHYT_RS06175 -0.8 -2.4 LPS biosynthesis compare
BPHYT_RS19675 -0.8 -1.6 hypothetical protein compare
BPHYT_RS17095 -0.8 -1.9 proline--tRNA ligase compare
BPHYT_RS27920 -0.8 -1.1 tricarballylate utilization protein B compare
BPHYT_RS08795 -0.8 -1.7 sulfate/thiosulfate transporter subunit compare
BPHYT_RS04385 -0.8 -2.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS17185 -0.8 -3.0 N-acetylglutamate synthase compare
BPHYT_RS35345 -0.8 -1.9 decarboxylase UbiD compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Burkholderia phytofirmans PsJN

For carbon source Sodium succinate dibasic hexahydrate across organisms