Experiment set1IT013 for Burkholderia phytofirmans PsJN

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS05905 +1.3 1.3 hypothetical protein compare
BPHYT_RS23370 +1.2 3.2 glycosyl transferase family 1 compare
BPHYT_RS35310 +1.1 1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS25000 +1.1 2.1 MFS transporter compare
BPHYT_RS20880 +1.0 1.5 polyketide cyclase compare
BPHYT_RS20025 +1.0 2.1 crotonase compare
BPHYT_RS10750 +1.0 1.9 LysR family transcriptional regulator compare
BPHYT_RS10040 +1.0 1.3 hypothetical protein compare
BPHYT_RS01505 +0.9 2.3 7-cyano-7-deazaguanine reductase compare
BPHYT_RS20000 +0.9 1.6 serine/threonine protein kinase compare
BPHYT_RS13320 +0.9 1.4 allantoate amidohydrolase compare
BPHYT_RS28880 +0.9 3.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS01730 +0.9 2.5 serine/threonine protein kinase compare
BPHYT_RS00980 +0.9 1.3 GCN5 family acetyltransferase compare
BPHYT_RS00960 +0.9 3.1 recombinase RecA compare
BPHYT_RS29485 +0.9 2.1 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS02765 +0.8 2.7 cytochrome BD oxidase subunit I compare
BPHYT_RS28350 +0.8 1.8 fatty acid desaturase compare
BPHYT_RS29475 +0.8 2.4 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS32595 +0.8 1.6 hypothetical protein compare
BPHYT_RS36150 +0.8 2.0 hypothetical protein compare
BPHYT_RS00690 +0.8 1.2 transcriptional regulator compare
BPHYT_RS25450 +0.8 1.4 membrane protein compare
BPHYT_RS33805 +0.8 1.2 hypothetical protein compare
BPHYT_RS01170 +0.8 2.1 hypothetical protein compare
BPHYT_RS02760 +0.8 3.0 cytochrome BD oxidase subunit II compare
BPHYT_RS27560 +0.8 1.7 histidine kinase compare
BPHYT_RS30490 +0.7 1.0 2-haloalkanoic acid dehalogenase compare
BPHYT_RS28360 +0.7 0.6 carboxymuconolactone decarboxylase compare
BPHYT_RS27410 +0.7 1.8 amidohydrolase compare
BPHYT_RS19920 +0.7 1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS34155 +0.7 1.7 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS26740 +0.7 1.7 hypothetical protein compare
BPHYT_RS13815 +0.7 2.8 hypothetical protein compare
BPHYT_RS25800 +0.7 1.3 sugar ABC transporter permease compare
BPHYT_RS20630 +0.7 1.3 patatin compare
BPHYT_RS34640 +0.7 1.5 TetR family transcriptional regulator compare
BPHYT_RS00115 +0.7 1.8 acetaldehyde dehydrogenase compare
BPHYT_RS02770 +0.7 4.6 membrane protein compare
BPHYT_RS11170 +0.7 1.4 hypothetical protein compare
BPHYT_RS12535 +0.7 1.0 membrane protein compare
BPHYT_RS08615 +0.7 1.1 hypothetical protein compare
BPHYT_RS35770 +0.7 1.0 glyoxalase compare
BPHYT_RS08405 +0.7 1.4 hypothetical protein compare
BPHYT_RS34035 +0.7 1.7 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS23250 +0.7 1.5 hypothetical protein compare
BPHYT_RS26015 +0.6 2.2 rod shape-determining protein MreB compare
BPHYT_RS23465 +0.6 3.0 aliphatic nitrilase compare
BPHYT_RS29175 +0.6 1.2 ABC transporter ATP-binding protein compare
BPHYT_RS01625 +0.6 2.6 chemotaxis protein CheY compare
BPHYT_RS17860 +0.6 2.5 transposase compare
BPHYT_RS08340 +0.6 1.1 chemotaxis protein CheY compare
BPHYT_RS36035 +0.6 1.5 hypothetical protein compare
BPHYT_RS24565 +0.6 2.3 membrane protein compare
BPHYT_RS21485 +0.6 1.1 hypothetical protein compare
BPHYT_RS35675 +0.6 1.0 short-chain dehydrogenase compare
BPHYT_RS02300 +0.6 1.2 acid shock protein compare
BPHYT_RS26910 +0.6 1.8 hypothetical protein compare
BPHYT_RS26525 +0.6 1.3 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS10500 +0.6 1.3 acetolactate synthase compare
BPHYT_RS27330 +0.6 0.8 hypothetical protein compare
BPHYT_RS32210 +0.6 0.6 hypothetical protein compare
BPHYT_RS09565 +0.6 1.4 acetyl-CoA acetyltransferase compare
BPHYT_RS20520 +0.6 1.1 transcriptional regulator compare
BPHYT_RS10830 +0.6 1.5 carbon monoxide dehydrogenase compare
BPHYT_RS30860 +0.6 1.9 sugar ABC transporter permease compare
BPHYT_RS00955 +0.6 2.0 DNA polymerase compare
BPHYT_RS00705 +0.6 1.5 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS30745 +0.6 1.1 hypothetical protein compare
BPHYT_RS09895 +0.6 1.0 LysR family transcriptional regulator compare
BPHYT_RS28660 +0.6 1.4 polyvinylalcohol dehydrogenase compare
BPHYT_RS35785 +0.6 1.3 glucose-1-dehydrogenase compare
BPHYT_RS26385 +0.6 1.8 glutamine amidotransferase compare
BPHYT_RS04970 +0.6 1.8 superoxide dismutase compare
BPHYT_RS30415 +0.6 1.6 AraC family transcriptional regulator compare
BPHYT_RS32860 +0.6 0.9 hypothetical protein compare
BPHYT_RS04910 +0.6 1.1 phenylacetic acid degradation protein compare
BPHYT_RS16195 +0.6 1.5 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS04560 +0.6 1.5 Hcp1 family type VI secretion system effector compare
BPHYT_RS01790 +0.6 4.4 LuxR family transcriptional regulator compare
BPHYT_RS23420 +0.6 1.4 acetoacetyl-CoA synthase compare
BPHYT_RS01795 +0.6 3.5 histidine kinase compare
BPHYT_RS10650 +0.6 1.0 membrane protein compare
BPHYT_RS06310 +0.6 1.8 heme oxygenase compare
BPHYT_RS23350 +0.6 1.7 NAD-dependent epimerase/dehydratase compare
BPHYT_RS32280 +0.6 1.5 membrane protein compare
BPHYT_RS26050 +0.6 1.4 ABC transporter permease compare
BPHYT_RS04170 +0.6 1.8 hypothetical protein compare
BPHYT_RS24495 +0.6 1.5 transcriptional regulator compare
BPHYT_RS07190 +0.6 2.2 acetyltransferase compare
BPHYT_RS36040 +0.5 2.2 hypothetical protein compare
BPHYT_RS05825 +0.5 1.7 hypothetical protein compare
BPHYT_RS25095 +0.5 1.5 AraC family transcriptional regulator compare
BPHYT_RS22815 +0.5 1.5 TonB-denpendent receptor compare
BPHYT_RS23030 +0.5 0.9 gluconate 2-dehydrogenase compare
BPHYT_RS29330 +0.5 2.4 acetyltransferase compare
BPHYT_RS28215 +0.5 1.0 D-ribose transporter ATP binding protein compare
BPHYT_RS21470 +0.5 0.9 6-hydroxynicotinate reductase compare
BPHYT_RS07480 +0.5 1.0 FAD-dependent oxidoreductase compare
BPHYT_RS05870 +0.5 1.9 hypothetical protein compare
BPHYT_RS35560 +0.5 1.5 endoribonuclease L-PSP compare
BPHYT_RS27445 +0.5 1.3 hypothetical protein compare
BPHYT_RS07215 +0.5 1.8 LysR family transcriptional regulator compare
BPHYT_RS34150 +0.5 2.2 Asp/Glu/hydantoin racemase compare
BPHYT_RS36440 +0.5 1.0 hypothetical protein compare
BPHYT_RS19985 +0.5 0.8 CoA-transferase compare
BPHYT_RS14095 +0.5 1.8 phosphohistidine phosphatase compare
BPHYT_RS34490 +0.5 0.8 hypothetical protein compare
BPHYT_RS09745 +0.5 2.7 glucose-6-phosphate isomerase compare
BPHYT_RS10435 +0.5 1.6 ThiJ/PfpI domain-containing protein compare
BPHYT_RS21790 +0.5 1.9 hypothetical protein compare
BPHYT_RS13515 +0.5 2.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS10465 +0.5 1.2 hypothetical protein compare
BPHYT_RS05290 +0.5 0.7 hypothetical protein compare
BPHYT_RS05395 +0.5 0.8 hypothetical protein compare
BPHYT_RS24110 +0.5 2.7 hypothetical protein compare
BPHYT_RS10470 +0.5 0.9 hypothetical protein compare
BPHYT_RS25870 +0.5 0.7 type III secretion system ATPase compare
BPHYT_RS05615 +0.5 1.7 hypothetical protein compare
BPHYT_RS21625 +0.5 0.8 LysR family transcriptional regulator compare
BPHYT_RS09390 +0.5 2.6 ABC transporter permease compare
BPHYT_RS20280 +0.5 1.8 hypothetical protein compare
BPHYT_RS14250 +0.5 3.4 glycosyl transferase compare
BPHYT_RS01620 +0.5 3.9 sensor histidine kinase compare
BPHYT_RS25370 +0.5 1.5 acyl-CoA dehydrogenase compare
BPHYT_RS13565 +0.5 1.2 bacterioferritin compare
BPHYT_RS21215 +0.5 2.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS05510 +0.5 3.3 quercetin 2,3-dioxygenase compare
BPHYT_RS19025 +0.5 3.6 transcriptional regulator compare
BPHYT_RS22190 +0.5 1.9 nucleoid-structuring protein H-NS compare
BPHYT_RS28410 +0.5 1.4 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS20940 +0.5 1.2 citrate synthase compare
BPHYT_RS36215 +0.5 1.3 hypothetical protein compare
BPHYT_RS08165 +0.5 1.1 pilus assembly protein TadE compare
BPHYT_RS25030 +0.5 1.1 gluconate 2-dehydrogenase compare
BPHYT_RS25445 +0.5 1.6 alkyl hydroperoxide reductase compare
BPHYT_RS07840 +0.5 1.8 muconate cycloisomerase compare
BPHYT_RS35945 +0.5 1.1 response regulator receiver compare
BPHYT_RS08410 +0.5 0.7 dehydrogenase compare
BPHYT_RS23895 +0.5 1.5 hypothetical protein compare
BPHYT_RS07435 +0.5 1.1 amino acid transporter compare
BPHYT_RS13285 +0.5 1.7 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS24210 +0.5 1.4 urea transporter compare
BPHYT_RS30880 +0.5 1.4 peptidase S13 compare
BPHYT_RS05515 +0.5 1.1 hypothetical protein compare
BPHYT_RS15585 +0.5 2.0 acetyltransferase compare
BPHYT_RS31690 +0.5 1.3 hypothetical protein compare
BPHYT_RS32960 +0.5 1.3 short-chain dehydrogenase compare
BPHYT_RS17830 +0.5 2.4 histidine kinase compare
BPHYT_RS10120 +0.5 1.4 membrane protein compare
BPHYT_RS24550 +0.5 1.4 hypothetical protein compare
BPHYT_RS22875 +0.5 1.4 hypothetical protein compare
BPHYT_RS13470 +0.5 0.7 arylsulfate sulfotransferase compare
BPHYT_RS24590 +0.5 0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS07080 +0.5 1.0 glutathione S-transferase compare
BPHYT_RS26540 +0.5 0.9 hypothetical protein compare
BPHYT_RS19940 +0.5 2.2 hypothetical protein compare
BPHYT_RS34030 +0.5 1.6 pilus assembly protein CpaB compare
BPHYT_RS11310 +0.5 0.9 LysR family transcriptional regulator compare
BPHYT_RS04585 +0.5 1.5 hypothetical protein compare
BPHYT_RS29520 +0.5 0.7 hypothetical protein compare
BPHYT_RS26065 +0.5 2.0 TetR family transcriptional regulator compare
BPHYT_RS27830 +0.5 1.9 universal stress protein A compare
BPHYT_RS33045 +0.5 1.0 response regulator receiver protein compare
BPHYT_RS28875 +0.5 1.4 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS21805 +0.5 1.0 transcriptional regulator compare
BPHYT_RS35545 +0.5 3.0 cobalt-containing nitrile hydratase subunit alpha compare
BPHYT_RS07870 +0.5 2.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BPHYT_RS20790 +0.5 1.0 TetR family transcriptional regulator compare
BPHYT_RS10945 +0.5 0.8 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS34625 +0.4 1.9 hypothetical protein compare
BPHYT_RS28190 +0.4 2.0 porin compare
BPHYT_RS11485 +0.4 1.5 6-phosphogluconate dehydrogenase compare
BPHYT_RS00925 +0.4 1.8 transposase compare
BPHYT_RS07930 +0.4 1.3 hypothetical protein compare
BPHYT_RS14010 +0.4 2.4 NUDIX hydrolase compare
BPHYT_RS22755 +0.4 1.5 LacI family transcription regulator compare
BPHYT_RS03655 +0.4 0.7 membrane protein compare
BPHYT_RS31415 +0.4 1.2 amino acid ABC transporter permease compare
BPHYT_RS00860 +0.4 2.0 3-ketoacyl-ACP reductase compare
BPHYT_RS35655 +0.4 1.1 hypothetical protein compare
BPHYT_RS18945 +0.4 2.3 flagellar biosynthesis protein FlhB compare
BPHYT_RS17800 +0.4 1.7 hypothetical protein compare
BPHYT_RS30780 +0.4 1.7 GMC family oxidoreductase compare
BPHYT_RS30140 +0.4 0.8 3-methylitaconate isomerase compare
BPHYT_RS32150 +0.4 1.1 hypothetical protein compare
BPHYT_RS25045 +0.4 1.3 LysR family transcriptional regulator compare
BPHYT_RS21160 +0.4 1.5 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS05085 +0.4 0.7 LysR family transcriptional regulator compare
BPHYT_RS21005 +0.4 2.3 asparaginase compare
BPHYT_RS27065 +0.4 0.8 hypothetical protein compare
BPHYT_RS02800 +0.4 2.2 5-carboxymethyl-2-hydroxymuconate isomerase compare
BPHYT_RS07255 +0.4 0.7 4-oxalocrotonate decarboxylase compare
BPHYT_RS25480 +0.4 1.8 hypothetical protein compare
BPHYT_RS29945 +0.4 1.3 histidine kinase compare
BPHYT_RS33425 +0.4 0.9 transcriptional regulator compare
BPHYT_RS25650 +0.4 0.9 dihydroxy-acid dehydratase compare
BPHYT_RS00855 +0.4 1.2 hypothetical protein compare
BPHYT_RS06710 +0.4 0.7 hypothetical protein compare
BPHYT_RS12290 +0.4 0.9 universal stress protein UspA compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Burkholderia phytofirmans PsJN

For carbon source Sodium succinate dibasic hexahydrate across organisms