Experiment set1IT012 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
AO356_08635 -4.7 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
AO356_18275 -4.6 -13.2 ornithine carbamoyltransferase compare
AO356_21405 -4.5 -5.3 3-isopropylmalate dehydratase compare
AO356_21440 -4.5 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_12525 -4.4 -9.8 acetylglutamate kinase compare
AO356_18325 -4.4 -10.9 argininosuccinate synthase compare
AO356_09815 -4.3 -5.9 imidazoleglycerol-phosphate dehydratase compare
AO356_21415 -4.3 -9.3 3-isopropylmalate dehydrogenase compare
AO356_09520 -4.2 -4.9 phosphoribosyl-AMP cyclohydrolase compare
AO356_09525 -4.1 -7.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14435 -4.1 -8.2 anthranilate phosphoribosyltransferase compare
AO356_14440 -4.1 -5.5 indole-3-glycerol-phosphate synthase compare
AO356_13085 -4.0 -10.8 N-acetylglutamate synthase compare
AO356_09810 -3.9 -3.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06965 -3.9 -9.3 histidinol dehydrogenase compare
AO356_13410 -3.8 -12.8 homoserine O-acetyltransferase compare
AO356_13405 -3.8 -11.1 methionine biosynthesis protein MetW compare
AO356_09375 -3.8 -21.9 glutamate synthase compare
AO356_16180 -3.8 -15.0 ketol-acid reductoisomerase compare
AO356_16170 -3.7 -11.7 acetolactate synthase 3 catalytic subunit compare
AO356_21400 -3.7 -5.4 isopropylmalate isomerase compare
AO356_10910 -3.6 -9.4 tryptophan synthase subunit alpha compare
AO356_10915 -3.6 -11.1 tryptophan synthase subunit beta compare
AO356_06550 -3.6 -13.4 2-isopropylmalate synthase compare
AO356_13605 -3.6 -9.7 5,10-methylenetetrahydrofolate reductase compare
AO356_16175 -3.6 -9.2 acetolactate synthase 3 regulatory subunit compare
AO356_13250 -3.4 -10.7 dihydroxy-acid dehydratase compare
AO356_06970 -3.4 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09370 -3.4 -12.3 glutamate synthase compare
AO356_21465 -3.4 -5.1 amidophosphoribosyltransferase compare
AO356_09800 -3.3 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08905 -3.3 -2.3 glycosyl transferase compare
AO356_02175 -3.3 -8.7 transaldolase compare
AO356_19795 -3.3 -3.2 glycerol-3-phosphate dehydrogenase compare
AO356_00555 -3.3 -11.3 sulfite reductase compare
AO356_08735 -3.2 -13.9 phosphoserine phosphatase compare
AO356_14420 -3.2 -15.7 anthranilate synthase compare
AO356_16075 -3.2 -5.9 Fis family transcriptional regulator compare
AO356_12520 -3.0 -2.8 orotate phosphoribosyltransferase compare
AO356_12025 -2.9 -13.3 pyruvate carboxylase subunit B compare
AO356_12020 -2.9 -12.7 pyruvate carboxylase subunit A compare
AO356_21470 -2.9 -6.9 O-succinylhomoserine sulfhydrylase compare
AO356_22795 -2.8 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_10340 -2.7 -13.6 phosphoserine phosphatase compare
AO356_07480 -2.7 -3.1 carbamoyl phosphate synthase large subunit compare
AO356_14430 -2.6 -8.1 anthranilate synthase compare
AO356_00560 -2.6 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_17830 -2.5 -6.7 pyruvate kinase compare
AO356_16050 -2.4 -2.9 glucose-6-phosphate isomerase compare
AO356_17520 -2.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_05160 -2.4 -9.6 glucose-6-phosphate dehydrogenase compare
AO356_19090 -2.4 -2.8 phosphoribosylaminoimidazole synthetase compare
AO356_05225 -2.4 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_09795 -2.4 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12780 -2.4 -6.5 argininosuccinate lyase compare
AO356_12015 -2.3 -9.4 LysR family transcriptional regulator compare
AO356_07915 -2.3 -3.4 exodeoxyribonuclease V subunit beta compare
AO356_10300 -2.2 -2.8 3-phosphoglycerate dehydrogenase compare
AO356_11315 -2.2 -1.5 shikimate dehydrogenase compare
AO356_15165 -2.2 -3.1 protein cII compare
AO356_22200 -2.1 -8.3 sirohydrochlorin ferrochelatase compare
AO356_02315 -2.1 -4.9 DNA topoisomerase I compare
AO356_12005 -1.9 -10.9 transcriptional regulator compare
AO356_07910 -1.8 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_17950 -1.7 -7.7 histidine kinase compare
AO356_13700 -1.5 -4.7 hypothetical protein compare
AO356_08585 -1.5 -3.7 50S ribosomal protein L9 compare
AO356_22950 -1.5 -2.0 peptidylprolyl isomerase compare
AO356_12900 -1.5 -3.6 exopolyphosphatase compare
AO356_18730 -1.4 -6.5 arginine N-succinyltransferase compare
AO356_06960 -1.4 -5.1 histidinol-phosphate aminotransferase compare
AO356_15815 -1.3 -2.2 gamma-glutamyl kinase compare
AO356_08875 -1.3 -2.6 toluene tolerance protein compare
AO356_11055 -1.3 -3.7 long-chain acyl-CoA thioester hydrolase compare
AO356_19050 -1.2 -2.2 cysteine synthase compare
AO356_09300 -1.1 -1.4 type II secretory protein PulM compare
AO356_27180 -1.1 -2.5 hypothetical protein compare
AO356_10585 -1.1 -7.3 hypothetical protein compare
AO356_17890 -1.1 -1.7 H-NS histone compare
AO356_24555 -1.1 -1.7 hypothetical protein compare
AO356_08895 -1.1 -1.4 GlcNAc-PI de-N-acetylase compare
AO356_28910 -1.1 -1.6 LysR family transcriptional regulator compare
AO356_20155 -1.0 -4.4 phosphate acyltransferase compare
AO356_06695 -1.0 -4.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_12990 -1.0 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
AO356_01750 -1.0 -2.6 ATP-dependent Clp protease proteolytic subunit compare
AO356_18805 -0.9 -1.0 magnesium transporter compare
AO356_07920 -0.9 -3.8 exodeoxyribonuclease V subunit gamma compare
AO356_03810 -0.9 -2.6 anti-anti-sigma factor compare
AO356_08975 -0.9 -6.3 diguanylate cyclase compare
AO356_22330 -0.9 -2.5 hypothetical protein compare
AO356_21790 -0.9 -1.7 sulfonate ABC transporter ATP-binding protein compare
AO356_03010 -0.9 -1.8 glutaredoxin compare
AO356_10880 -0.8 -0.9 hypothetical protein compare
AO356_08985 -0.8 -1.0 hypothetical protein compare
AO356_12380 -0.8 -4.1 ATP-dependent DNA helicase RecG compare
AO356_01740 -0.8 -2.1 DNA-binding protein compare
AO356_01745 -0.8 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_10330 -0.8 -6.0 threonine dehydratase compare
AO356_02135 -0.8 -2.7 hypothetical protein compare
AO356_26895 -0.8 -2.0 2Fe-2S ferredoxin compare
AO356_03500 -0.8 -2.3 3-oxoacyl-ACP reductase compare
AO356_18020 -0.8 -2.1 ATP-dependent DNA helicase RuvA compare
AO356_17485 -0.8 -2.7 elongation factor 4 compare
AO356_16435 -0.8 -1.0 hypothetical protein compare
AO356_00975 -0.8 -1.2 hypothetical protein compare
AO356_13425 -0.7 -2.0 hypothetical protein compare
AO356_28665 -0.7 -1.6 peptide synthetase compare
AO356_25975 -0.7 -3.7 aldehyde dehydrogenase compare
AO356_27235 -0.7 -3.7 hypothetical protein compare
AO356_02025 -0.7 -1.1 hypothetical protein compare
AO356_05455 -0.7 -3.5 hypothetical protein compare
AO356_04445 -0.7 -1.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_08290 -0.7 -1.1 precorrin-6Y C5,15-methyltransferase compare
AO356_23785 -0.7 -1.8 hypothetical protein compare
AO356_29795 -0.7 -1.2 amino acid transporter compare
AO356_21260 -0.7 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_27250 -0.7 -3.2 hypothetical protein compare
AO356_18735 -0.7 -2.8 arginine N-succinyltransferase compare
AO356_00355 -0.7 -4.1 chemotaxis protein CheY compare
AO356_02360 -0.7 -1.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_05670 -0.7 -1.5 recombinase RecA compare
AO356_08375 -0.7 -1.2 acetyltransferase compare
AO356_13590 -0.7 -4.8 DEAD/DEAH box helicase compare
AO356_25775 -0.7 -2.1 peptide synthetase compare
AO356_23945 -0.7 -1.2 hypothetical protein compare
AO356_05800 -0.7 -2.6 hypothetical protein compare
AO356_12515 -0.7 -1.8 exodeoxyribonuclease III compare
AO356_29115 -0.7 -2.2 Vanillate O-demethylase oxidoreductase compare
AO356_21410 -0.7 -2.2 SAM-dependent methyltransferase compare
AO356_08890 -0.7 -3.6 glycosyltransferase compare
AO356_25580 -0.7 -1.7 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
AO356_25530 -0.7 -2.0 LuxR family transcriptional regulator compare
AO356_30275 -0.7 -1.4 hypothetical protein compare
AO356_03245 -0.7 -1.6 hypothetical protein compare
AO356_27615 -0.6 -2.0 hypothetical protein compare
AO356_27215 -0.6 -1.4 hypothetical protein compare
AO356_07390 -0.6 -1.0 polyribonucleotide nucleotidyltransferase compare
AO356_24335 -0.6 -1.0 type VI secretion protein compare
AO356_19045 -0.6 -4.7 chemotaxis protein CheY compare
AO356_06605 -0.6 -2.2 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_15450 -0.6 -5.2 AMP nucleosidase compare
AO356_00735 -0.6 -2.2 glycosyl transferase family 2 compare
AO356_19180 -0.6 -2.7 cobalamin synthase compare
AO356_16185 -0.6 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_05010 -0.6 -3.8 diguanylate cyclase compare
AO356_24770 -0.6 -2.1 type II secretion system protein GspG compare
AO356_01555 -0.6 -3.1 acyl-CoA dehydrogenase compare
AO356_30345 -0.6 -2.4 IclR family transcriptional regulator compare
AO356_25130 -0.6 -1.5 hypothetical protein compare
AO356_27225 -0.6 -2.6 polyketide cyclase compare
AO356_13965 -0.6 -2.0 hypothetical protein compare
AO356_08265 -0.6 -2.2 precorrin-3B C17-methyltransferase compare
AO356_05065 -0.6 -4.0 LacI family transcriptional regulator compare
AO356_22665 -0.6 -2.0 chemotaxis protein compare
AO356_02250 -0.6 -3.4 pyridine nucleotide-disulfide oxidoreductase compare
AO356_29355 -0.6 -1.0 hypothetical protein compare
AO356_06685 -0.6 -0.8 preprotein translocase subunit YajC compare
AO356_24860 -0.6 -3.1 cytochrome C biogenesis protein compare
AO356_21515 -0.6 -1.0 antitoxin compare
AO356_19165 -0.6 -1.9 adenosylcobinamide kinase compare
AO356_00270 -0.6 -1.7 hypothetical protein compare
AO356_21310 -0.6 -0.8 filamentous hemagglutinin compare
AO356_06360 -0.6 -1.7 hypothetical protein compare
AO356_11270 -0.6 -3.3 potassium transporter peripheral membrane component compare
AO356_05070 -0.6 -2.6 hypothetical protein compare
AO356_26040 -0.6 -0.8 hypothetical protein compare
AO356_11675 -0.6 -3.5 chromosome partitioning protein compare
AO356_27230 -0.6 -2.5 hypothetical protein compare
AO356_08270 -0.6 -3.6 precorrin-2 C20-methyltransferase compare
AO356_03095 -0.6 -3.0 protease HtpX compare
AO356_08990 -0.6 -2.6 lactate dehydrogenase compare
AO356_19170 -0.5 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_28675 -0.5 -1.1 glycosyl hydrolase compare
AO356_02830 -0.5 -3.8 transcriptional regulator compare
AO356_14130 -0.5 -1.5 amidophosphoribosyltransferase compare
AO356_04575 -0.5 -3.3 RNA polymerase subunit sigma compare
AO356_27050 -0.5 -1.2 hypothetical protein compare
AO356_19285 -0.5 -0.7 tRNA-Asp compare
AO356_06065 -0.5 -0.7 ArsC family transcriptional regulator compare
AO356_27360 -0.5 -1.7 nitrile hydratase subunit alpha compare
AO356_08295 -0.5 -1.8 cobalt-precorrin-6A synthase compare
AO356_29270 -0.5 -1.3 ABC transporter permease compare
AO356_04970 -0.5 -2.5 aspartate-semialdehyde dehydrogenase compare
AO356_09185 -0.5 -1.0 hypothetical protein compare
AO356_25865 -0.5 -0.9 peroxidase compare
AO356_18855 -0.5 -0.9 hypothetical protein compare
AO356_03180 -0.5 -1.8 CysB family transcriptional regulator compare
AO356_23540 -0.5 -1.6 GntR family transcriptional regulator compare
AO356_26400 -0.5 -2.2 LysR family transcriptional regulator compare
AO356_00545 -0.5 -3.4 methionine synthase compare
AO356_07400 -0.5 -2.8 pseudouridine synthase compare
AO356_01965 -0.5 -1.9 terminase compare
AO356_18515 -0.5 -2.0 pseudouridine synthase compare
AO356_28695 -0.5 -1.3 IclR family transcriptional regulator compare
AO356_28835 -0.5 -1.5 ABC transporter substrate-binding protein compare
AO356_04055 -0.5 -1.2 hypothetical protein compare
AO356_19085 -0.5 -2.5 phosphoribosylglycinamide formyltransferase compare
AO356_23075 -0.5 -1.2 hypothetical protein compare
AO356_23995 -0.5 -1.9 amino acid ABC transporter compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Gluconic Acid sodium salt across organisms