Experiment set1IT012 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_15 -4.3 -4.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1624 -3.7 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2880 -3.7 -13.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1831 -3.6 -13.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_5665 -3.6 -6.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1534 -3.5 -18.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1626 -3.3 -7.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2545 -3.3 -15.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2303 -3.2 -15.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1408 -3.1 -5.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1307 -3.1 -3.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2548 -3.1 -7.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2879 -3.1 -8.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_742 -3.1 -9.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2009 -3.1 -5.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1434 -3.1 -8.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2112 -3.0 -15.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1627 -3.0 -5.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1533 -3.0 -10.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1067 -3.0 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2549 -3.0 -10.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1830 -3.0 -9.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_58 -2.9 -7.4 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2338 -2.9 -8.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5666 -2.8 -3.7 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_6 -2.8 -6.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_4065 -2.8 -9.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_2272 -2.7 -5.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_847 -2.7 -9.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2858 -2.7 -12.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2547 -2.6 -3.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_3506 -2.6 -8.8 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1315 -2.5 -9.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_12 -2.5 -7.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_350 -2.5 -7.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2384 -2.5 -10.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_3697 -2.5 -9.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1565 -2.5 -5.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_762 -2.4 -7.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2011 -2.4 -9.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2878 -2.4 -9.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2282 -2.4 -9.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2486 -2.4 -3.5 hypothetical protein compare
Pf1N1B4_2010 -2.3 -6.8 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2850 -2.3 -8.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3812 -2.2 -8.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2105 -2.1 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2337 -2.0 -6.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_556 -2.0 -5.2 Gluconate permease compare
Pf1N1B4_1617 -2.0 -7.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2487 -1.9 -9.1 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5425 -1.9 -2.7 DNA-binding protein HU-beta compare
Pf1N1B4_4485 -1.8 -3.0 membrane protein, putative compare
Pf1N1B4_1 -1.8 -2.6 Colicin V production protein compare
Pf1N1B4_1906 -1.8 -3.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3833 -1.8 -7.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_27 -1.7 -4.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2427 -1.7 -3.2 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_2377 -1.7 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1625 -1.7 -2.8 FIG00956267: hypothetical protein compare
Pf1N1B4_3153 -1.5 -2.6 hypothetical protein compare
Pf1N1B4_3081 -1.5 -13.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2280 -1.5 -7.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2488 -1.5 -7.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1611 -1.4 -4.9 Nitrogen regulation protein NR(I) compare
Pf1N1B4_3518 -1.4 -2.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1566 -1.3 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_652 -1.3 -7.4 Sensory box histidine kinase compare
Pf1N1B4_3692 -1.3 -2.4 Chaperone protein HtpG compare
Pf1N1B4_603 -1.3 -3.0 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_3451 -1.3 -3.3 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4030 -1.2 -3.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2526 -1.2 -9.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4851 -1.2 -2.4 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_1279 -1.2 -2.5 Flp pilus assembly protein TadB compare
Pf1N1B4_1057 -1.2 -2.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3445 -1.2 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_3368 -1.2 -2.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_2490 -1.2 -4.9 Biotin synthesis protein BioC compare
Pf1N1B4_1365 -1.1 -3.5 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2489 -1.1 -4.4 Biotin synthesis protein BioH compare
Pf1N1B4_4317 -1.1 -2.3 DNA/RNA non-specific endonuclease compare
Pf1N1B4_3093 -1.1 -1.3 Outer membrane protein H precursor compare
Pf1N1B4_13 -1.1 -2.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2335 -1.1 -3.0 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_2859 -1.1 -7.7 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1370 -1.1 -1.4 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_1535 -1.0 -2.6 hypothetical protein compare
Pf1N1B4_4612 -1.0 -2.5 FIG00954117: hypothetical protein compare
Pf1N1B4_602 -1.0 -1.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_2856 -1.0 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3909 -1.0 -2.1 Cell division inhibitor-related protein compare
Pf1N1B4_733 -1.0 -1.9 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_5329 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_1570 -1.0 -2.7 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_5720 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_4857 -1.0 -3.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2039 -1.0 -2.1 hypothetical protein compare
Pf1N1B4_3531 -1.0 -2.1 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_3325 -1.0 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_5888 -1.0 -3.2 probable polysaccharide biosynthesis protein compare
Pf1N1B4_2491 -1.0 -2.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_3279 -1.0 -2.2 putative membrane protein compare
Pf1N1B4_32 -1.0 -2.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1180 -0.9 -2.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_5511 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_1636 -0.9 -1.4 FIG00954739: hypothetical protein compare
Pf1N1B4_2853 -0.9 -1.5 Pantoate--beta-alanine ligase (EC 6.3.2.1) compare
Pf1N1B4_4035 -0.9 -1.7 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_4880 -0.9 -2.6 Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family compare
Pf1N1B4_4494 -0.9 -2.9 hypothetical protein compare
Pf1N1B4_623 -0.9 -1.7 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf1N1B4_5067 -0.9 -2.4 PUTATIVE TRANSFERASE PROTEIN( EC:2.- ) compare
Pf1N1B4_683 -0.9 -2.5 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_909 -0.9 -2.2 Ketosteroid isomerase-related protein compare
Pf1N1B4_102 -0.9 -1.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3152 -0.9 -3.8 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_1317 -0.9 -2.0 Sensor histidine kinase/response regulator compare
Pf1N1B4_734 -0.9 -2.2 Electron transport complex protein RnfA compare
Pf1N1B4_4366 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_348 -0.8 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4810 -0.8 -2.8 Polymyxin resistance protein PmrM compare
Pf1N1B4_2176 -0.8 -2.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_2360 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_2612 -0.8 -2.6 Putative transport protein compare
Pf1N1B4_2724 -0.8 -4.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_2008 -0.8 -5.2 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_4470 -0.8 -1.6 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_678 -0.8 -4.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1234 -0.8 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3907 -0.8 -1.8 FIG00953287: hypothetical protein compare
Pf1N1B4_5137 -0.8 -4.2 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_1065 -0.8 -3.7 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Pf1N1B4_2356 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_2485 -0.8 -1.5 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_5745 -0.8 -1.9 FIG139928: Putative protease compare
Pf1N1B4_3777 -0.8 -2.8 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_6041 -0.8 -1.5 Carbon storage regulator compare
Pf1N1B4_1332 -0.8 -1.7 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_2885 -0.8 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_4659 -0.8 -2.0 Putative outer membrane lipoprotein compare
Pf1N1B4_1403 -0.8 -4.1 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_4038 -0.8 -1.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4419 -0.8 -1.1 Organosulfonate utilization protein SsuF compare
Pf1N1B4_4040 -0.8 -2.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_1613 -0.8 -1.7 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_2458 -0.8 -1.9 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_1334 -0.8 -1.5 FIG00955840: hypothetical protein compare
Pf1N1B4_4957 -0.7 -1.7 Transcriptional regulator, TetR family compare
Pf1N1B4_6035 -0.7 -2.1 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_197 -0.7 -1.7 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_3906 -0.7 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_4039 -0.7 -3.5 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1329 -0.7 -3.2 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_5659 -0.7 -5.0 NfuA Fe-S protein maturation compare
Pf1N1B4_1262 -0.7 -3.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_3508 -0.7 -2.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_4313 -0.7 -2.7 putative membrane protein compare
Pf1N1B4_3549 -0.7 -1.5 YciL protein compare
Pf1N1B4_3351 -0.7 -1.3 FIG00954302: hypothetical protein compare
Pf1N1B4_2958 -0.7 -1.9 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4550 -0.7 -1.9 beta-ketoacyl synthase, putative compare
Pf1N1B4_4029 -0.7 -2.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_5917 -0.7 -1.6 Multimeric flavodoxin WrbA compare
Pf1N1B4_3331 -0.7 -1.9 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5453 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_5371 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_501 -0.7 -1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_4870 -0.7 -1.1 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_421 -0.7 -2.7 Type IV pilus biogenesis protein PilZ compare
Pf1N1B4_539 -0.7 -1.3 Transcriptional regulators compare
Pf1N1B4_2144 -0.7 -4.0 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_239 -0.7 -1.9 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_883 -0.7 -1.3 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_5479 -0.7 -2.9 hypothetical protein compare
Pf1N1B4_241 -0.7 -1.7 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_2035 -0.7 -2.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_2209 -0.7 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_1236 -0.7 -3.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_4921 -0.7 -1.8 Haloacid dehalogenase, type II compare
Pf1N1B4_438 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_3750 -0.7 -1.4 Potassium efflux system KefA protein / Small-conductance mechanosensitive channel compare
Pf1N1B4_1475 -0.7 -2.9 FIG00962376: hypothetical protein compare
Pf1N1B4_1584 -0.7 -1.7 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_4139 -0.7 -1.4 Transcriptional regulator, MerR family compare
Pf1N1B4_3742 -0.7 -1.5 Oxidoreductase, zinc-binding compare
Pf1N1B4_3595 -0.7 -1.3 Flagellin protein FlaG compare
Pf1N1B4_1527 -0.7 -1.3 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_5072 -0.7 -1.5 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_2791 -0.7 -1.5 Putative inner membrane protein (Fragment) compare
Pf1N1B4_5554 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_3709 -0.7 -2.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_1561 -0.7 -1.7 FIG00954300: hypothetical protein compare
Pf1N1B4_1614 -0.7 -1.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_2479 -0.7 -1.6 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_257 -0.7 -3.0 sensor histidine kinase/response regulator compare
Pf1N1B4_4874 -0.6 -1.0 hypothetical protein compare
Pf1N1B4_5675 -0.6 -1.6 hypothetical protein compare
Pf1N1B4_2948 -0.6 -1.7 FIG00954698: hypothetical protein compare
Pf1N1B4_1042 -0.6 -1.1 Dihydroneopterin triphosphate epimerase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source D-Gluconic Acid sodium salt across organisms