Experiment set1IT012 for Sinorhizobium meliloti 1021

Compare to:

L-Fucose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -10.6 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
SMc02766 -9.4 -6.5 tryptophan synthase subunit beta compare
SMc01726 -9.0 -5.9 acetylglutamate kinase compare
SMc02899 -8.7 -8.5 prephenate dehydratase compare
SMc04405 -8.6 -6.0 3-isopropylmalate dehydrogenase compare
SMc00235 -8.6 -5.9 anthranilate phosphoribosyltransferase compare
SMc02245 -8.5 -5.9 dihydroorotate dehydrogenase 2 compare
SMc00236 -8.5 -5.9 Indole-3-glycerol phosphate synthase compare
SMc01054 -8.2 -5.7 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01843 -8.2 -9.8 5,10-methylenetetrahydrofolate reductase compare
SMc00917 -8.2 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02838 -8.2 -8.0 phosphoglyceromutase compare
SMc01801 -8.1 -4.9 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02569 -8.1 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
SMc02717 -8.1 -5.6 2-isopropylmalate synthase compare
SMc01028 -7.8 -12.0 phosphopyruvate hydratase compare
SMc01431 -7.6 -9.1 acetolactate synthase 3 catalytic subunit compare
SMc04045 -7.6 -7.4 dihydroxy-acid dehydratase compare
SMc02217 -7.6 -5.2 O-succinylhomoserine sulfhydrylase compare
SMc00614 -7.6 -7.4 phosphoribosylglycinamide formyltransferase compare
SMc01004 -7.5 -11.5 phosphoribosyl-AMP cyclohydrolase compare
SMc02767 -7.4 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc03797 -7.4 -11.4 homoserine O-succinyltransferase compare
SMc03823 -7.3 -14.0 isopropylmalate isomerase large subunit compare
SMc03981 -7.2 -6.4 phosphoglycerate kinase compare
SMc04028 -7.2 -16.2 glutamate synthase compare
SMc02725 -7.2 -14.1 anthranilate synthase compare
SMc00640 -7.1 -10.9 phosphoserine aminotransferase compare
SMc00293 -7.1 -15.9 homoserine dehydrogenase compare
SMc01494 -7.1 -11.5 phosphoserine phosphatase compare
SMc00993 -7.1 -11.9 phosphoribosylamine--glycine ligase compare
SMc00494 -7.1 -2.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02562 -6.9 -9.5 phosphoenolpyruvate carboxykinase compare
SMc00488 -6.8 -18.2 phosphoribosylformylglycinamidine synthase II compare
SMc02765 -6.8 -12.2 tryptophan synthase subunit alpha compare
SMc00412 -6.8 -4.7 orotidine 5'-phosphate decarboxylase compare
SM_b21175 -6.8 -6.0 phosphate uptake ABC transporter permease compare
SMa1635 -6.8 -2.4 hypothetical protein compare
SMc02570 -6.7 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01361 -6.6 -6.4 dihydroorotase compare
SMc01360 -6.6 -4.6 aspartate carbamoyltransferase catalytic subunit compare
SMc04002 -6.6 -8.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00918 -6.6 -12.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc00615 -6.4 -9.7 phosphoribosylaminoimidazole synthetase compare
SMc03895 -6.4 -21.2 pyruvate carboxylase compare
SMc00495 -6.3 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02137 -6.2 -6.6 ornithine carbamoyltransferase compare
SMc04088 -6.2 -8.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SM_b21176 -6.1 -5.9 phosphate uptake ABC transporter substrate-binding protein precursor compare
SM_b21177 -6.1 -10.1 phosphate uptake ABC transporter ATP-binding protein compare
SMc03112 -6.1 -13.9 B12-dependent methionine synthase compare
SMc02755 -6.0 -8.2 S-adenosyl-L-homocysteine hydrolase compare
SM_b21112 -6.0 -7.9 L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase (from data) conserved
SMc00131 -6.0 -16.3 transcriptional regulator compare
SMc00815 -5.9 -3.5 inosine 5'-monophosphate dehydrogenase compare
SMc03229 -5.9 -3.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03826 -5.8 -5.6 argininosuccinate synthase compare
SMc00554 -5.6 -13.0 amidophosphoribosyltransferase compare
SMc02307 -5.6 -10.7 histidinol dehydrogenase compare
SMc00493 -5.5 -6.1 phosphoribosylformylglycinamidine synthase I compare
SMc04026 -5.4 -7.6 glutamate synthase compare
SMc00092 -5.4 -14.2 phosphoadenosine phosphosulfate reductase compare
SMc02124 -5.4 -16.2 nitrite reductase compare
SMc02165 -5.4 -10.7 orotate phosphoribosyltransferase compare
SMc03763 -5.3 -3.7 cytosine-specific methyltransferase compare
SMc01215 -5.3 -3.6 carbamoyl phosphate synthase large subunit compare
SMc03978 -5.2 -3.6 transketolase compare
SMc00963 -5.2 -6.1 hypothetical protein compare
SMc00711 -5.1 -6.2 cyclohexadienyl dehydrogenase compare
SMc02166 -5.0 -10.4 dihydroorotase compare
SM_b21111 -4.9 -7.6 oxidoreductase, RED superfamily protein conserved
SMc02123 -4.9 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01053 -4.9 -5.2 siroheme synthase compare
SMc04001 -4.7 -1.6 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc02574 -4.6 -6.0 imidazoleglycerol-phosphate dehydratase compare
SM_b21174 -4.6 -8.8 phosphate uptake ABC transporter permease compare
SMc00017 -4.6 -2.2 homoserine kinase compare
SMc02246 -4.5 -1.6 hypothetical protein compare
SMc03795 -4.5 -2.2 isopropylmalate isomerase small subunit compare
SMc01880 -4.4 -4.9 pantoate--beta-alanine ligase compare
SMc00090 -4.4 -9.8 sulfate adenylyltransferase compare
SMc01569 -4.3 -3.0 carbamoyl phosphate synthase small subunit compare
SM_b21108 -4.3 -7.7 L-fucose mutarotase (EC 5.1.3.29) (from data) conserved
SMc01770 -4.3 -2.7 serine hydroxymethyltransferase compare
SMc00876 -4.3 -7.5 ATP-binding MRP protein compare
SM_b21110 -4.2 -5.1 dehydratase involved in L-fucose catabolism (from data) compare
SMc02172 -4.1 -13.5 transcriptional regulator compare
SMc00641 -4.1 -5.4 D-3-phosphoglycerate dehydrogenase compare
SMc04346 -4.0 -5.0 ketol-acid reductoisomerase compare
SMc00091 -4.0 -9.7 sulfate adenylyltransferase compare
SMc03979 -3.9 -4.0 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b21109 -3.9 -8.9 L-fucose dehydrogenase (EC 1.1.1.122) (from data) compare
SMc01850 -3.7 -4.9 hypothetical protein compare
SM_b21103 -3.6 -14.6 ABC transporter for L-Fucose, periplasmic substrate-binding protein (from data) compare
SMc02138 -3.5 -4.6 acetylornithine transaminase compare
SM_b21107 -3.5 -10.3 dehydratase involved in L-fucose catabolism (from data) compare
SM_b21104 -3.4 -10.9 ABC transporter for L-Fucose, permease component 1 (from data) compare
SMc01164 -3.4 -11.7 hypothetical protein compare
SM_b21105 -3.3 -9.2 ABC transporter for L-Fucose, permease component 2 (from data) compare
SMc02983 -3.2 -8.8 ornithine, DAP, or arginine decarboxylase compare
SMc00414 -3.1 -12.3 hypothetical protein compare
SMc03776 -3.0 -4.3 gamma-glutamyl kinase compare
SM_b21106 -3.0 -11.1 ABC transporter for L-Fucose, ATPase component (from data) compare
SMc01881 -3.0 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02776 -2.8 -10.5 D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism (from data) conserved
SMc00294 -2.8 -11.4 aminotransferase compare
SMc03777 -2.4 -6.0 gamma-glutamyl phosphate reductase compare
SMc02147 -2.4 -8.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc00302 -2.4 -4.9 hypothetical protein compare
SMc01147 -2.3 -5.0 coproporphyrinogen III oxidase compare
SMc03069 -2.2 -3.8 6-phosphogluconolactonase compare
SMc02724 -2.2 -4.4 hypothetical protein compare
SM_b20509 -2.2 -3.3 transcriptional regulator compare
SMc00296 -2.1 -9.4 POLY3-hydroxybutyrate polymerase compare
SMc01206 -2.1 -2.9 queuine tRNA-ribosyltransferase compare
SM_b20850 -2.1 -12.4 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) conserved
SMc02141 -2.0 -5.0 phosphate transporter PhoU compare
SMc01495 -2.0 -3.2 transcriptional regulator compare
SMc02050 -1.7 -4.5 trigger factor compare
SMc02140 -1.6 -2.0 phosphate regulon transcriptional regulatory protein compare
SMc02833 -1.6 -3.4 penicillin-insensitive murein endopeptidase compare
SM_b20313 -1.6 -4.0 glycerone kinase compare
SMc01842 -1.6 -1.5 methyltransferase transcription regulator protein compare
SMc01368 -1.6 -6.1 transport transmembrane protein compare
SMc00241 -1.5 -2.5 transcriptional regulator compare
SMc02435 -1.5 -2.8 methyltransferase compare
SMc02227 -1.5 -5.4 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc01440 -1.5 -3.9 hydrolase serine protease transmembrane protein compare
SMc01441 -1.5 -6.3 membrane bound protease compare
SM_b20483 -1.5 -8.2 catabolite repressor protein compare
SM_b20312 -1.4 -8.3 dihydroxyacetone kinase compare
SMc00010 -1.4 -3.0 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc04348 -1.4 -1.6 transcriptional regulator compare
SMc03849 -1.4 -1.9 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMa0078 -1.4 -7.5 LacI family transcriptional regulator compare
SMc00820 -1.4 -5.6 transcriptional regulator compare
SMc04330 -1.3 -3.2 trimethylamine methyltransferase compare
SMc02975 -1.3 -5.7 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc01438 -1.3 -4.4 protease precursor signal peptide protein compare
SM_b20307 -1.3 -1.1 dihydroxyacetone kinase compare
SMc00450 -1.3 -2.0 protoheme IX farnesyltransferase compare
SMc00806 -1.3 -2.2 hypothetical protein compare
SMc05020 -1.3 -2.3 entericidin A precursor compare
SMc02102 -1.3 -3.8 hypothetical protein compare
SMc02164 -1.3 -2.7 fructokinase compare
SMc02142 -1.3 -4.6 phosphate transporter ATP-binding protein compare
SMc04260 -1.3 -7.4 transcriptional regulator compare
SMc00356 -1.3 -6.4 lysyl-tRNA synthetase compare
SMc00295 -1.3 -1.7 hypothetical protein compare
SMc02777 -1.2 -4.7 transcriptional regulator compare
SMc03935 -1.2 -8.4 hypothetical protein compare
SMc03100 -1.2 -1.1 hypothetical protein compare
SMc01187 -1.2 -1.9 rare lipoprotein A compare
SMc02115 -1.2 -1.0 hypothetical protein compare
SMc00856 -1.2 -1.4 hypothetical protein compare
SMc01124 -1.2 -4.1 PII uridylyl-transferase compare
SM_b21101 -1.2 -7.6 L-fucono-1,5-lactonase; D-arabinolactonase (from data) conserved
SM_b20758 -1.1 -2.2 ArsR family transcriptional regulator compare
SM_b21347 -1.1 -2.0 pectin degradation protein compare
SMc00025 -1.1 -4.6 pyruvate phosphate dikinase compare
SMc03774 -1.1 -2.2 hypothetical protein compare
SMc02844 -1.1 -1.0 transcriptional regulator compare
SMc01260 -1.1 -4.3 transcriptional regulator compare
SMc02228 -1.1 -4.4 acetyl-CoA acetyltransferase compare
SMc02363 -1.0 -2.7 cytochrome C-type biogenesis transmembrane protein compare
SMc04345 -1.0 -3.0 hypothetical protein compare
SMc04233 -1.0 -1.7 hypothetical protein compare
SMc02659 -1.0 -4.2 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc02485 -1.0 -2.0 signal peptide protein compare
SM_b20314 -1.0 -5.9 glycerone kinase compare
SMc01430 -1.0 -3.0 acetolactate synthase 3 regulatory subunit compare
SMc00013 -1.0 -1.4 cytochrome C oxidase subunit III transmembrane protein compare
SMc02308 -1.0 -3.6 hypothetical protein compare
SMc00511 -1.0 -3.4 D-ribulose-5-phosphate 3-epimerase compare
SMc04121 -1.0 -1.9 uracil phosphoribosyltransferase compare
SMc02225 -1.0 -2.8 hypothetical protein compare
SMc02985 -0.9 -5.0 hypothetical protein compare
SMc02373 -0.9 -1.4 hypothetical protein compare
SMc02362 -0.9 -3.1 cytochrome c-type biogenesis protein CcmE compare
SM_b20811 -0.9 -2.7 hypothetical protein compare
SMc04224 -0.9 -0.8 hypothetical protein compare
SMc00329 -0.9 -2.6 iron response regulator protein compare
SMc02695 -0.9 -4.5 GTP-dependent nucleic acid-binding protein EngD compare
SMc04352 -0.9 -4.3 signal peptide protein compare
SM_b20282 -0.9 -1.3 spermidine/putrescine ABC transporter permease compare
SMc01337 -0.9 -1.1 hypothetical protein compare
SMc00838 -0.9 -5.1 hypothetical protein compare
SMc02144 -0.9 -2.8 phosphate ABC transporter permease compare
SMa0085 -0.9 -2.8 dehydrogenase compare
SMc01472 -0.9 -0.8 50S ribosomal protein L11 methyltransferase compare
SMc03184 -0.9 -1.4 PH adaptation potassium efflux system G transmembrane protein compare
SMa1201 -0.9 -1.8 hypothetical protein compare
SM_b20711 -0.9 -2.3 hypothetical protein compare
SMc02046 -0.9 -1.6 hypothetical protein compare
SMc00073 -0.9 -1.6 hypothetical protein compare
SMc02683 -0.9 -1.7 hypothetical protein compare
SMc03878 -0.9 -2.5 acetoacetyl-CoA reductase compare
SMc02232 -0.9 -1.8 hypothetical protein compare
SMa2020 -0.9 -3.3 Transcriptional regulator compare
SMc02641 -0.9 -4.1 UDP-glucose 6-dehydrogenase compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Fucose in Sinorhizobium meliloti 1021

For carbon source L-Fucose across organisms