Experiment set1IT012 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Thallium(I) acetate 0.0001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS03515 +11.5 60.8 Fe-S assembly protein IscX compare
CA265_RS20890 +5.8 16.7 MRP family ATP-binding protein compare
CA265_RS15995 +5.6 4.6 hypothetical protein compare
CA265_RS03600 +3.3 24.5 hypothetical protein compare
CA265_RS18135 +3.1 9.4 uroporphyrinogen-III synthase compare
CA265_RS10150 +2.8 14.3 cysteine synthase B compare
CA265_RS03615 +2.5 12.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
CA265_RS10155 +2.2 14.7 serine acetyltransferase compare
CA265_RS19755 +1.9 7.2 hypothetical protein compare
CA265_RS08685 +1.8 11.6 fructose-6-phosphate aldolase compare
CA265_RS09455 +1.7 14.8 FUSC family protein compare
CA265_RS03715 +1.7 4.1 hypothetical protein compare
CA265_RS03610 +1.6 4.3 imidazole glycerol phosphate synthase subunit HisF compare
CA265_RS21060 +1.6 3.2 hypothetical protein compare
CA265_RS00490 +1.5 2.5 hypothetical protein compare
CA265_RS09270 +1.5 4.1 hypothetical protein compare
CA265_RS07735 +1.5 3.2 transcriptional regulator compare
CA265_RS14415 +1.5 12.6 pseudouridine synthase compare
CA265_RS14485 +1.5 8.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS23145 +1.5 3.0 hypothetical protein compare
CA265_RS01975 +1.5 3.4 cell division protein compare
CA265_RS03605 +1.4 2.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
CA265_RS24195 +1.4 7.0 TetR family transcriptional regulator compare
CA265_RS02765 +1.3 3.4 cell division protein ZapA compare
CA265_RS20175 +1.3 4.4 thiamine-phosphate diphosphorylase compare
CA265_RS04585 +1.3 3.0 GNAT family N-acetyltransferase compare
CA265_RS21330 +1.2 6.9 TetR family transcriptional regulator compare
CA265_RS13240 +1.2 1.3 preprotein translocase subunit YajC compare
CA265_RS03740 +1.2 3.1 hypothetical protein compare
CA265_RS21365 +1.2 2.6 thiol reductase thioredoxin compare
CA265_RS20095 +1.2 3.5 NADH oxidase compare
CA265_RS02760 +1.1 2.8 hypothetical protein compare
CA265_RS21565 +1.1 1.9 cold-shock protein compare
CA265_RS08070 +1.1 1.9 tRNA-Ser compare
CA265_RS19575 +1.1 2.3 glycoside hydrolase compare
CA265_RS24605 +1.1 2.0 hypothetical protein compare
CA265_RS21320 +1.1 3.2 hypothetical protein compare
CA265_RS20785 +1.1 3.1 hypothetical protein compare
CA265_RS15895 +1.0 3.0 hypothetical protein compare
CA265_RS03125 +1.0 1.1 hypothetical protein compare
CA265_RS06515 +1.0 2.2 hypothetical protein compare
CA265_RS18745 +1.0 1.6 hypothetical protein compare
CA265_RS18380 +1.0 2.8 ribose 5-phosphate isomerase B compare
CA265_RS20685 +1.0 2.3 hypothetical protein compare
CA265_RS18140 +0.9 4.4 DUF4271 domain-containing protein compare
CA265_RS13720 +0.9 2.9 4-oxalocrotonate tautomerase compare
CA265_RS14670 +0.9 4.8 hypothetical protein compare
CA265_RS19410 +0.9 2.1 hypothetical protein compare
CA265_RS08660 +0.9 1.6 glyoxalase compare
CA265_RS14745 +0.9 2.7 biopolymer transporter ExbD compare
CA265_RS20990 +0.9 1.4 sugar transporter compare
CA265_RS10990 +0.9 3.5 hypothetical protein compare
CA265_RS19025 +0.9 3.3 peptidase M23 compare
CA265_RS14740 +0.9 4.5 biopolymer transporter ExbB compare
CA265_RS07545 +0.9 2.0 extradiol dioxygenase compare
CA265_RS23465 +0.9 2.5 threonine synthase compare
CA265_RS03620 +0.9 3.0 imidazole glycerol phosphate synthase subunit HisH compare
CA265_RS17025 +0.9 1.7 hypothetical protein compare
CA265_RS21425 +0.9 3.7 hypothetical protein compare
CA265_RS23525 +0.9 4.9 hypothetical protein compare
CA265_RS15815 +0.8 1.5 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS17125 +0.8 1.6 DNA-binding response regulator compare
CA265_RS05330 +0.8 2.1 hypothetical protein compare
CA265_RS15615 +0.8 2.9 malate dehydrogenase compare
CA265_RS06320 +0.8 5.1 hypothetical protein compare
CA265_RS10000 +0.8 1.8 nitrite reductase small subunit compare
CA265_RS21690 +0.8 3.3 hypothetical protein compare
CA265_RS22965 +0.8 3.2 leucyl/phenylalanyl-tRNA--protein transferase compare
CA265_RS18200 +0.8 2.1 DUF4440 domain-containing protein compare
CA265_RS15690 +0.8 3.7 NADPH-dependent FMN reductase compare
CA265_RS13710 +0.8 1.7 hypothetical protein compare
CA265_RS24775 +0.8 3.1 peptidylprolyl isomerase compare
CA265_RS03745 +0.8 1.7 hypothetical protein compare
CA265_RS11610 +0.8 0.9 RNA-binding protein S4 compare
CA265_RS05135 +0.8 2.7 ferritin compare
CA265_RS09840 +0.8 1.6 YajQ family cyclic di-GMP-binding protein compare
CA265_RS16005 +0.8 2.9 hypothetical protein compare
CA265_RS14750 +0.8 3.3 energy transducer TonB compare
CA265_RS20910 +0.8 4.2 mechanosensitive ion channel protein MscS compare
CA265_RS22820 +0.8 4.1 flagellar motor protein MotB compare
CA265_RS22915 +0.8 2.9 hypothetical protein compare
CA265_RS13500 +0.8 2.3 hypothetical protein compare
CA265_RS21605 +0.8 3.6 sensor histidine kinase compare
CA265_RS06505 +0.8 2.5 hypothetical protein compare
CA265_RS21010 +0.8 2.8 hypothetical protein compare
CA265_RS20350 +0.8 3.3 gliding motility lipoprotein GldH compare
CA265_RS10910 +0.8 4.8 iron/manganese transporter compare
CA265_RS25305 +0.8 2.9 hypothetical protein compare
CA265_RS17145 +0.8 2.5 malate:quinone oxidoreductase compare
CA265_RS19560 +0.8 1.6 hypothetical protein compare
CA265_RS01055 +0.8 2.3 hypothetical protein compare
CA265_RS05070 +0.7 2.7 Na+/H+ antiporter NhaA compare
CA265_RS22690 +0.7 4.5 hypothetical protein compare
CA265_RS12855 +0.7 1.7 hypothetical protein compare
CA265_RS14665 +0.7 4.4 hypothetical protein compare
CA265_RS04340 +0.7 2.1 hypothetical protein compare
CA265_RS05405 +0.7 2.6 hypothetical protein compare
CA265_RS17115 +0.7 2.5 arsenate reductase compare
CA265_RS21845 +0.7 2.2 transcriptional regulator compare
CA265_RS03890 +0.7 0.8 hypothetical protein compare
CA265_RS19465 +0.7 2.3 protein tyrosine phosphatase compare
CA265_RS20075 +0.7 2.4 hypothetical protein compare
CA265_RS24820 +0.7 2.9 adenylate cyclase compare
CA265_RS06315 +0.7 3.6 uridine kinase compare
CA265_RS03155 +0.7 2.8 hypothetical protein compare
CA265_RS14650 +0.7 2.4 thiol-disulfide oxidoreductase compare
CA265_RS23510 +0.7 2.0 energy transducer TonB compare
CA265_RS04040 +0.7 2.0 hypothetical protein compare
CA265_RS19600 +0.7 3.6 hypothetical protein compare
CA265_RS07515 +0.7 3.5 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS18225 +0.7 2.8 DNA-binding response regulator compare
CA265_RS10140 +0.7 2.5 hypothetical protein compare
CA265_RS03640 +0.7 2.9 ATP phosphoribosyltransferase compare
CA265_RS04445 +0.7 1.2 hypothetical protein compare
CA265_RS06375 +0.7 2.9 cystathionine gamma-synthase compare
CA265_RS07470 +0.7 2.5 hypothetical protein compare
CA265_RS19605 +0.7 2.8 serine hydrolase compare
CA265_RS11675 +0.7 3.1 aspartate aminotransferase compare
CA265_RS04590 +0.7 3.0 LysR family transcriptional regulator compare
CA265_RS18115 +0.6 3.7 gliding motility protein GldN compare
CA265_RS12645 +0.6 2.0 molybdopterin converting factor compare
CA265_RS23505 +0.6 1.7 biopolymer transporter ExbD compare
CA265_RS20760 +0.6 2.9 hypothetical protein compare
CA265_RS07785 +0.6 2.2 hypothetical protein compare
CA265_RS13555 +0.6 3.0 hypothetical protein compare
CA265_RS22720 +0.6 1.1 hypothetical protein compare
CA265_RS11635 +0.6 2.0 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS11295 +0.6 2.2 Tat (twin-arginine translocation) pathway signal sequence containing protein compare
CA265_RS15800 +0.6 1.1 DNA-binding protein compare
CA265_RS18725 +0.6 1.9 short-chain dehydrogenase compare
CA265_RS06310 +0.6 3.0 succinyl-CoA--3-ketoacid-CoA transferase compare
CA265_RS10585 +0.6 3.1 transcriptional regulator compare
CA265_RS04600 +0.6 2.7 hypothetical protein compare
CA265_RS12875 +0.6 3.7 ABC-F family ATPase compare
CA265_RS02115 +0.6 2.0 Fur family transcriptional regulator compare
CA265_RS25375 +0.6 1.8 hypothetical protein compare
CA265_RS00605 +0.6 3.0 endonuclease III compare
CA265_RS16130 +0.6 2.1 cell division protein FtsX compare
CA265_RS24205 +0.6 1.5 hypothetical protein compare
CA265_RS20920 +0.6 2.9 hypothetical protein compare
CA265_RS17220 +0.6 2.6 NAD(P)H-dependent oxidoreductase compare
CA265_RS19040 +0.6 2.0 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
CA265_RS06340 +0.6 2.7 hypothetical protein compare
CA265_RS16775 +0.6 2.4 transcriptional initiation protein Tat compare
CA265_RS10390 +0.6 0.8 hypothetical protein compare
CA265_RS04710 +0.6 1.9 hypothetical protein compare
CA265_RS04385 +0.6 1.4 hypothetical protein compare
CA265_RS20790 +0.6 2.4 hypothetical protein compare
CA265_RS13150 +0.6 3.7 peptidase M28 compare
CA265_RS19630 +0.6 3.5 DNA polymerase I compare
CA265_RS11740 +0.6 1.2 hypothetical protein compare
CA265_RS03180 +0.6 1.8 hypothetical protein compare
CA265_RS15810 +0.6 1.9 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
CA265_RS19615 +0.6 2.2 metal-dependent hydrolase compare
CA265_RS12075 +0.6 1.4 hypothetical protein compare
CA265_RS15785 +0.6 2.2 branched-chain-amino-acid transaminase compare
CA265_RS22035 +0.6 1.3 hypothetical protein compare
CA265_RS05765 +0.6 2.1 hypothetical protein compare
CA265_RS11935 +0.6 2.6 hypothetical protein compare
CA265_RS24940 +0.6 1.2 hypothetical protein compare
CA265_RS14825 +0.6 0.7 outer membrane protein assembly factor BamD compare
CA265_RS25440 +0.6 2.4 capsular biosynthesis protein compare
CA265_RS15790 +0.6 0.9 SAM-dependent methyltransferase compare
CA265_RS00335 +0.6 0.9 hypothetical protein compare
CA265_RS00515 +0.6 1.5 hypothetical protein compare
CA265_RS09425 +0.6 1.1 hypothetical protein compare
CA265_RS00360 +0.6 1.6 hypothetical protein compare
CA265_RS19165 +0.6 0.9 serine hydroxymethyltransferase compare
CA265_RS25045 +0.6 3.0 phytanoyl-CoA dioxygenase compare
CA265_RS00270 +0.6 1.5 hypothetical protein compare
CA265_RS19100 +0.6 1.6 damage-inducible protein DinB compare
CA265_RS06335 +0.6 2.0 hypothetical protein compare
CA265_RS23560 +0.6 2.2 DNA-binding protein compare
CA265_RS20770 +0.6 1.9 hypothetical protein compare
CA265_RS08220 +0.6 2.7 DNA mismatch repair protein MutS compare
CA265_RS00855 +0.5 2.8 hypothetical protein compare
CA265_RS09140 +0.5 1.7 MerR family transcriptional regulator compare
CA265_RS25450 +0.5 0.6 iron-sulfur cluster assembly accessory protein compare
CA265_RS18825 +0.5 2.0 hypothetical protein compare
CA265_RS24200 +0.5 1.2 fatty acid hydroxylase compare
CA265_RS24255 +0.5 1.7 sugar kinase compare
CA265_RS14925 +0.5 1.1 hypothetical protein compare
CA265_RS13220 +0.5 2.2 hypothetical protein compare
CA265_RS18550 +0.5 0.8 N-acetyltransferase compare
CA265_RS21030 +0.5 2.3 hypothetical protein compare
CA265_RS08855 +0.5 3.1 MFS transporter compare
CA265_RS07700 +0.5 1.0 hypothetical protein compare
CA265_RS19545 +0.5 2.1 protease compare
CA265_RS16155 +0.5 2.3 tRNA pseudouridine(55) synthase TruB compare
CA265_RS11745 +0.5 2.2 hypothetical protein compare
CA265_RS21555 +0.5 1.6 hypothetical protein compare
CA265_RS06170 +0.5 1.9 hypothetical protein compare
CA265_RS23140 +0.5 1.6 hypothetical protein compare
CA265_RS02110 +0.5 1.6 hypothetical protein compare
CA265_RS04595 +0.5 1.8 hypothetical protein compare
CA265_RS19740 +0.5 1.7 gliding motility lipoprotein GldD compare
CA265_RS13265 +0.5 1.4 DNA-binding protein compare
CA265_RS03435 +0.5 1.8 hypothetical protein compare
CA265_RS25205 +0.5 2.5 hypothetical protein compare
CA265_RS23940 +0.5 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Thallium(I) acetate across organisms