Experiment set1IT012 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS07555 -4.6 -3.1 potassium transporter Kup compare
RR42_RS15890 -4.0 -8.6 heme biosynthesis protein HemY compare
RR42_RS33255 -3.5 -5.2 protein-tyrosine phosphatase compare
RR42_RS03095 -3.4 -2.3 succinyl-CoA synthetase subunit beta compare
RR42_RS14790 -3.4 -9.8 cobalamin biosynthesis protein CobD compare
RR42_RS18270 -3.3 -3.9 murein transglycosylase compare
RR42_RS15410 -3.2 -6.8 membrane protein compare
RR42_RS33250 -3.1 -8.3 tyrosine protein kinase compare
RR42_RS33260 -3.1 -9.4 multidrug MFS transporter compare
RR42_RS17105 -2.9 -12.7 Clp protease ClpX compare
RR42_RS04820 -2.9 -6.5 choline ABC transporter permease compare
RR42_RS00790 -2.9 -7.5 chemotaxis protein CheY compare
RR42_RS15460 -2.8 -6.4 translocation protein TolB compare
RR42_RS15895 -2.8 -5.7 uroporphyrinogen III methyltransferase compare
RR42_RS14080 -2.7 -10.3 RNA polymerase sigma factor RpoE compare
RR42_RS26935 -2.6 -4.0 farnesyl-diphosphate farnesyltransferase compare
RR42_RS04535 -2.5 -5.7 cysteine synthase compare
RR42_RS20205 -2.5 -4.1 chromosome partitioning protein compare
RR42_RS12615 -2.5 -3.1 LexA family transcriptional regulator compare
RR42_RS15415 -2.5 -3.3 membrane protein compare
RR42_RS18965 -2.5 -14.0 ABC transporter permease compare
RR42_RS18950 -2.5 -10.7 hypothetical protein compare
RR42_RS18855 -2.5 -4.1 preprotein translocase compare
RR42_RS04325 -2.5 -4.3 membrane protein compare
RR42_RS01260 -2.5 -9.7 lauroyl acyltransferase compare
RR42_RS18970 -2.5 -13.1 toluene ABC transporter ATP-binding protein compare
RR42_RS15455 -2.4 -6.1 membrane protein compare
RR42_RS04815 -2.4 -6.8 glycine/betaine ABC transporter substrate-binding protein conserved
RR42_RS02810 -2.4 -3.2 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS05790 -2.3 -6.8 lipoprotein compare
RR42_RS15720 -2.3 -5.6 hypothetical protein compare
RR42_RS05955 -2.3 -1.5 hypothetical protein compare
RR42_RS01775 -2.3 -8.0 glutamate--cysteine ligase compare
RR42_RS18960 -2.2 -12.0 ABC transporter substrate-binding protein compare
RR42_RS15475 -2.2 -5.8 protein tolQ compare
RR42_RS00625 -2.2 -1.9 hypothetical protein compare
RR42_RS11770 -2.2 -1.6 cyclase compare
RR42_RS07365 -2.2 -3.7 pyruvate dehydrogenase compare
RR42_RS09015 -2.1 -4.8 trigger factor compare
RR42_RS24930 -2.1 -1.4 AraC family transcriptional regulator compare
RR42_RS33245 -2.1 -6.6 mannose-1-phosphate guanyltransferase compare
RR42_RS33235 -2.1 -8.1 GDP-mannose 4,6-dehydratase compare
RR42_RS01780 -2.0 -7.9 glutathione synthetase compare
RR42_RS14365 -2.0 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS15225 -2.0 -1.9 RNA-binding protein compare
RR42_RS33240 -2.0 -12.3 GDP-L-fucose synthase compare
RR42_RS04810 -2.0 -2.2 glycine/betaine ABC transporter permease compare
RR42_RS19485 -2.0 -1.6 general secretion pathway protein GspH compare
RR42_RS19005 -2.0 -4.3 3-dehydroquinate synthase compare
RR42_RS35875 -1.9 -9.0 UDP-galactose-4-epimerase compare
RR42_RS17620 -1.9 -3.7 phosphatidylglycerophosphatase compare
RR42_RS04825 -1.9 -4.3 glycine/betaine ABC transporter ATP-binding protein compare
RR42_RS13365 -1.9 -2.4 peptidase P60 compare
RR42_RS13910 -1.9 -8.3 glutamate racemase compare
RR42_RS07410 -1.9 -8.3 peptidase S11 compare
RR42_RS31530 -1.9 -2.1 histidine kinase compare
RR42_RS15775 -1.9 -4.7 N-acetylneuraminate synthase compare
RR42_RS15525 -1.9 -1.6 hypothetical protein compare
RR42_RS15770 -1.8 -6.1 hypothetical protein compare
RR42_RS14480 -1.8 -4.5 hypothetical protein compare
RR42_RS13195 -1.8 -7.2 protein-L-isoaspartate O-methyltransferase compare
RR42_RS01255 -1.8 -6.5 lauroyl acyltransferase compare
RR42_RS05860 -1.7 -5.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14360 -1.7 -2.1 tryptophan synthase subunit alpha compare
RR42_RS00115 -1.7 -1.5 hypothetical protein compare
RR42_RS18485 -1.7 -1.3 glutaredoxin compare
RR42_RS12050 -1.7 -6.6 DNA polymerase compare
RR42_RS06095 -1.7 -3.0 hypothetical protein compare
RR42_RS15470 -1.6 -2.1 biopolymer transporter ExbD compare
RR42_RS06450 -1.6 -6.7 membrane protein compare
RR42_RS15785 -1.6 -7.6 glycosyl transferase family 28 compare
RR42_RS04700 -1.6 -1.5 ribonuclease G compare
RR42_RS13190 -1.6 -4.1 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS10910 -1.6 -9.3 aminodeoxychorismate lyase conserved
RR42_RS33210 -1.5 -4.6 teichoic acid biosynthesis protein compare
RR42_RS13565 -1.5 -11.2 lytic transglycosylase compare
RR42_RS01405 -1.5 -11.0 lytic transglycosylase compare
RR42_RS17685 -1.5 -7.5 alkyl hydroperoxide reductase compare
RR42_RS18945 -1.5 -3.1 toluene tolerance protein compare
RR42_RS17390 -1.5 -5.5 ATP-dependent DNA helicase RecG compare
RR42_RS18840 -1.5 -4.4 2-alkenal reductase compare
RR42_RS15745 -1.5 -5.6 group1 glycosyl transferase compare
RR42_RS15790 -1.4 -7.4 aminotransferase class III compare
RR42_RS15420 -1.4 -3.1 hypothetical protein compare
RR42_RS32850 -1.4 -2.3 universal stress protein UspA compare
RR42_RS35450 -1.4 -2.0 hypothetical protein compare
RR42_RS32585 -1.4 -1.6 cytochrome C oxidase compare
RR42_RS15710 -1.4 -5.5 LPS biosynthesis protein compare
RR42_RS13200 -1.4 -8.5 stationary phase survival protein SurE compare
RR42_RS02775 -1.4 -1.8 molecular chaperone SurA compare
RR42_RS13145 -1.4 -1.6 DNA-binding protein compare
RR42_RS00715 -1.4 -2.4 ferritin compare
RR42_RS04280 -1.4 -3.4 aldehyde dehydrogenase compare
RR42_RS35850 -1.4 -4.4 hypothetical protein compare
RR42_RS07380 -1.4 -2.5 dihydrolipoamide dehydrogenase compare
RR42_RS03530 -1.4 -1.4 hypothetical protein compare
RR42_RS15795 -1.4 -3.7 spore coat protein compare
RR42_RS07565 -1.4 -6.8 transcription accessory protein compare
RR42_RS33215 -1.4 -8.5 transferase compare
RR42_RS01680 -1.3 -6.0 cytochrome C550 compare
RR42_RS05420 -1.3 -5.3 membrane protein compare
RR42_RS13040 -1.3 -3.2 iron transporter compare
RR42_RS28920 -1.3 -1.5 hypothetical protein compare
RR42_RS03020 -1.3 -1.4 MarR family transcriptional regulator compare
RR42_RS15090 -1.3 -3.1 DNA helicase compare
RR42_RS20440 -1.3 -1.4 histidine kinase compare
RR42_RS31290 -1.3 -2.4 XRE family transcriptional regulator compare
RR42_RS27230 -1.3 -3.0 DNA-binding protein compare
RR42_RS18850 -1.3 -1.7 preprotein translocase subunit TatC compare
RR42_RS20020 -1.3 -4.5 cytochrome C compare
RR42_RS21140 -1.2 -3.0 LysR family transcriptional regulator compare
RR42_RS13905 -1.2 -2.5 fumarate hydratase compare
RR42_RS16240 -1.2 -0.9 cobalamin biosynthesis protein CbiX compare
RR42_RS19860 -1.2 -1.2 tartronate semialdehyde reductase compare
RR42_RS37435 -1.2 -2.4 elongation factor G compare
RR42_RS17865 -1.2 -4.3 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS01925 -1.2 -5.4 photosynthetic protein synthase I compare
RR42_RS03415 -1.2 -4.0 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS08590 -1.2 -2.0 baseplate assembly protein compare
RR42_RS13270 -1.2 -5.8 recombination protein RecR compare
RR42_RS05485 -1.2 -1.8 polynucleotide phosphorylase/polyadenylase compare
RR42_RS06545 -1.2 -1.6 thioesterase compare
RR42_RS01830 -1.2 -4.7 sulfurtransferase compare
RR42_RS02150 -1.2 -1.5 membrane protein compare
RR42_RS17885 -1.2 -2.8 ABC transporter permease compare
RR42_RS04320 -1.2 -3.8 cell division protein FtsK compare
RR42_RS30410 -1.2 -1.9 hypothetical protein compare
RR42_RS27215 -1.1 -2.9 LysR family transcriptional regulator compare
RR42_RS29490 -1.1 -1.8 toxin HipA compare
RR42_RS32740 -1.1 -1.0 enoyl-CoA hydratase compare
RR42_RS14985 -1.1 -1.5 30S ribosomal protein S21 compare
RR42_RS26220 -1.1 -2.2 citrate lyase subunit beta compare
RR42_RS13275 -1.1 -4.9 antibiotic biosynthesis monooxygenase compare
RR42_RS01690 -1.1 -2.1 ferredoxin compare
RR42_RS27065 -1.1 -1.7 hypothetical protein compare
RR42_RS18300 -1.1 -3.7 anthranilate synthase subunit II compare
RR42_RS08240 -1.1 -1.3 DNA-binding protein compare
RR42_RS32975 -1.1 -1.6 LysR family transcriptional regulator compare
RR42_RS01720 -1.1 -1.6 membrane protein compare
RR42_RS02665 -1.1 -7.5 peptidase compare
RR42_RS32235 -1.1 -4.0 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS27550 -1.1 -0.9 hypothetical protein compare
RR42_RS12550 -1.1 -2.6 hypothetical protein compare
RR42_RS09060 -1.1 -2.1 glucose-6-phosphate isomerase compare
RR42_RS08040 -1.1 -1.9 hypothetical protein compare
RR42_RS15825 -1.1 -7.0 capsular biosynthesis protein compare
RR42_RS29280 -1.1 -1.1 hypothetical protein compare
RR42_RS01185 -1.1 -6.3 muropeptide transporter compare
RR42_RS07385 -1.1 -1.5 Phasin (PHA-granule associated protein) compare
RR42_RS18420 -1.1 -4.8 hypothetical protein compare
RR42_RS14390 -1.1 -2.9 3-isopropylmalate dehydratase compare
RR42_RS15735 -1.1 -5.2 pyridoxal phosphate-dependent aminotransferase compare
RR42_RS02420 -1.1 -0.9 SAM-dependent methyltransferase compare
RR42_RS01920 -1.1 -1.7 protoheme IX farnesyltransferase compare
RR42_RS04980 -1.0 -2.0 hypothetical protein compare
RR42_RS22940 -1.0 -1.9 TetR family transcriptional regulator compare
RR42_RS20680 -1.0 -2.8 membrane protein compare
RR42_RS33150 -1.0 -3.3 hypothetical protein compare
RR42_RS15715 -1.0 -6.2 glycosyl transferase compare
RR42_RS15905 -1.0 -6.0 phosphoenolpyruvate carboxylase compare
RR42_RS13125 -1.0 -3.5 pyrrolo-quinoline quinone compare
RR42_RS35250 -1.0 -1.4 alpha/beta hydrolase compare
RR42_RS04475 -1.0 -6.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS06255 -1.0 -2.5 lipoprotein compare
RR42_RS15740 -1.0 -2.3 hypothetical protein compare
RR42_RS09555 -1.0 -1.5 universal stress protein UspA compare
RR42_RS35780 -1.0 -1.6 chemotaxis protein CheY compare
RR42_RS12040 -1.0 -5.9 MFS transporter compare
RR42_RS07120 -1.0 -2.0 hypothetical protein compare
RR42_RS34520 -1.0 -0.8 transposase compare
RR42_RS06485 -1.0 -5.7 chorismate synthase compare
RR42_RS11580 -1.0 -2.1 hypothetical protein compare
RR42_RS08235 -1.0 -2.6 terminase compare
RR42_RS22295 -1.0 -1.7 methionine sulfoxide reductase B compare
RR42_RS19830 -1.0 -1.9 LysR family transcriptional regulator compare
RR42_RS12210 -1.0 -3.3 gamma-glutamyl cyclotransferase compare
RR42_RS03670 -1.0 -1.5 isochorismatase compare
RR42_RS18295 -1.0 -6.1 anthranilate synthase component I compare
RR42_RS06875 -1.0 -0.6 hypothetical protein compare
RR42_RS14385 -1.0 -2.6 3-isopropylmalate dehydrogenase compare
RR42_RS15730 -1.0 -4.4 sugar transferase compare
RR42_RS26080 -1.0 -1.0 hypothetical protein compare
RR42_RS02950 -1.0 -2.0 malonate decarboxylase subunit beta compare
RR42_RS26580 -1.0 -1.3 hypothetical protein compare
RR42_RS17555 -1.0 -1.1 hypothetical protein compare
RR42_RS22435 -1.0 -4.8 membrane protein compare
RR42_RS02705 -0.9 -1.6 Holliday junction DNA helicase RuvA compare
RR42_RS28190 -0.9 -2.4 MerR family transcriptional regulator compare
RR42_RS15750 -0.9 -3.5 hypothetical protein compare
RR42_RS21095 -0.9 -3.3 GntR family transcriptional regulator compare
RR42_RS00440 -0.9 -1.6 hypothetical protein compare
RR42_RS18310 -0.9 -1.1 indole-3-glycerol-phosphate synthase compare
RR42_RS05290 -0.9 -2.0 ankyrin compare
RR42_RS27120 -0.9 -1.2 amino acid ABC transporter permease compare
RR42_RS13800 -0.9 -4.3 formyltetrahydrofolate deformylase compare
RR42_RS27520 -0.9 -2.0 hypothetical protein compare
RR42_RS27700 -0.9 -1.3 hypothetical protein compare
RR42_RS21040 -0.9 -0.9 hypothetical protein compare
RR42_RS07140 -0.9 -1.3 hypothetical protein compare
RR42_RS04540 -0.9 -6.1 lytic transglycosylase compare


Specific Phenotypes

For 8 genes in this experiment

For stress Sodium nitrate in Cupriavidus basilensis FW507-4G11

For stress Sodium nitrate across organisms