Experiment set1IT011 for Pseudomonas syringae pv. syringae B728a
KB with Acriflavine 7.75 ug/ml
Group: stressMedia: KB + Acriflavine (7.75 ug/ml)
Culturing: SyringaeB728a_ML2, 24 well microplate, Aerobic, at 28 (C), shaken=250 rpm
By: Tyler on 12/4/17
Media components: 10 g/L Bacto Peptone, 1.5 g/L Potassium phosphate dibasic, 15 g/L Glycerol, 0.6 g/L Magnesium sulfate
Specific Phenotypes
For 3 genes in this experiment
For stress Acriflavine in Pseudomonas syringae pv. syringae B728a
For stress Acriflavine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance Efflux Pumps | 2 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 2 |
| Auxin degradation | 1 |
| Oxidative stress | 1 |
| Photorespiration (oxidative C2 cycle) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Methane metabolism
- Phenylalanine metabolism
- Tryptophan metabolism
- Phenylpropanoid biosynthesis
- Biosynthesis of phenylpropanoids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| betanidin degradation | 1 | 1 | 1 |
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| baicalein degradation (hydrogen peroxide detoxification) | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| xanthommatin biosynthesis | 4 | 1 | 1 |
| luteolin triglucuronide degradation | 4 | 1 | 1 |
| sesamin biosynthesis | 8 | 1 | 1 |
| matairesinol biosynthesis | 10 | 1 | 1 |
| justicidin B biosynthesis | 10 | 1 | 1 |