Experiment set1IT011 for Sinorhizobium meliloti 1021

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02123 -8.8 -3.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01843 -8.7 -6.0 5,10-methylenetetrahydrofolate reductase compare
SMc02899 -8.3 -8.1 prephenate dehydratase compare
SMc02245 -8.2 -5.7 dihydroorotate dehydrogenase 2 compare
SMc02766 -8.2 -13.7 tryptophan synthase subunit beta compare
SMc00235 -8.1 -5.6 anthranilate phosphoribosyltransferase compare
SMc03797 -8.1 -7.9 homoserine O-succinyltransferase compare
SMc00614 -7.9 -5.5 phosphoribosylglycinamide formyltransferase compare
SMc00917 -7.9 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc04002 -7.8 -7.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00495 -7.8 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00711 -7.8 -5.4 cyclohexadienyl dehydrogenase compare
SMc02767 -7.8 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01726 -7.7 -7.5 acetylglutamate kinase compare
SMc03823 -7.7 -11.8 isopropylmalate isomerase large subunit compare
SMc00640 -7.4 -7.2 phosphoserine aminotransferase compare
SMc03112 -7.2 -13.0 B12-dependent methionine synthase compare
SMc02217 -7.2 -5.0 O-succinylhomoserine sulfhydrylase compare
SMc02137 -7.2 -5.0 ornithine carbamoyltransferase compare
SMc02717 -7.2 -12.9 2-isopropylmalate synthase compare
SMc04045 -7.1 -7.0 dihydroxy-acid dehydratase compare
SMc03895 -7.1 -15.9 pyruvate carboxylase compare
SMc01431 -7.0 -11.8 acetolactate synthase 3 catalytic subunit compare
SMc01361 -6.8 -4.7 dihydroorotase compare
SMc04405 -6.8 -9.4 3-isopropylmalate dehydrogenase compare
SMc00554 -6.7 -6.6 amidophosphoribosyltransferase compare
SMc00494 -6.7 -2.7 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02765 -6.7 -12.8 tryptophan synthase subunit alpha compare
SMc01494 -6.7 -9.5 phosphoserine phosphatase compare
SMc00293 -6.6 -15.5 homoserine dehydrogenase compare
SMc00993 -6.6 -10.2 phosphoribosylamine--glycine ligase compare
SMa1635 -6.6 -2.6 hypothetical protein compare
SMc03070 -6.6 -6.5 glucose-6-phosphate 1-dehydrogenase compare
SMc04028 -6.6 -16.6 glutamate synthase compare
SMc02725 -6.5 -13.9 anthranilate synthase compare
SMc00488 -6.5 -16.9 phosphoribosylformylglycinamidine synthase II compare
SMc03776 -6.5 -4.5 gamma-glutamyl kinase compare
SMc04026 -6.4 -8.9 glutamate synthase compare
SMc00918 -6.4 -10.7 ATP phosphoribosyltransferase regulatory subunit compare
SMc00092 -6.4 -12.2 phosphoadenosine phosphosulfate reductase compare
SMc02569 -6.4 -5.9 imidazole glycerol phosphate synthase subunit HisF compare
SMc00493 -6.3 -7.5 phosphoribosylformylglycinamidine synthase I compare
SMc00236 -6.3 -5.6 Indole-3-glycerol phosphate synthase compare
SMc01360 -6.2 -4.3 aspartate carbamoyltransferase catalytic subunit compare
SMc01801 -6.1 -4.7 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc03826 -6.1 -4.2 argininosuccinate synthase compare
SMc02124 -6.0 -15.5 nitrite reductase compare
SMc02165 -5.9 -9.1 orotate phosphoribosyltransferase compare
SMc01004 -5.9 -9.7 phosphoribosyl-AMP cyclohydrolase compare
SMc00131 -5.8 -15.8 transcriptional regulator compare
SMc00090 -5.8 -12.1 sulfate adenylyltransferase compare
SMc04088 -5.7 -8.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03777 -5.7 -8.8 gamma-glutamyl phosphate reductase compare
SMc00412 -5.7 -5.5 orotidine 5'-phosphate decarboxylase compare
SMc02166 -5.6 -12.4 dihydroorotase compare
SMc00815 -5.5 -3.7 inosine 5'-monophosphate dehydrogenase compare
SMc03229 -5.5 -3.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc03979 -5.3 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02570 -5.3 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02572 -5.2 -5.0 imidazole glycerol phosphate synthase subunit HisH compare
SMc01880 -5.1 -3.5 pantoate--beta-alanine ligase compare
SMc02755 -5.1 -7.0 S-adenosyl-L-homocysteine hydrolase compare
SMc03763 -5.0 -3.4 cytosine-specific methyltransferase compare
SMc02307 -4.9 -9.8 histidinol dehydrogenase compare
SMc03978 -4.9 -3.4 transketolase compare
SMc01053 -4.9 -5.1 siroheme synthase compare
SMc01215 -4.9 -3.4 carbamoyl phosphate synthase large subunit compare
SMc00091 -4.9 -12.2 sulfate adenylyltransferase compare
SMc01569 -4.8 -2.6 carbamoyl phosphate synthase small subunit compare
SMc04001 -4.5 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00294 -4.5 -11.9 aminotransferase compare
SMc01770 -4.5 -2.1 serine hydroxymethyltransferase compare
SMc02425 -4.4 -5.9 transcriptional regulator compare
SMc02172 -4.4 -11.8 transcriptional regulator compare
SMc00615 -4.3 -4.6 phosphoribosylaminoimidazole synthetase compare
SMc00017 -4.3 -2.3 homoserine kinase compare
SM_b21177 -4.0 -6.4 phosphate uptake ABC transporter ATP-binding protein compare
SMc00876 -3.9 -7.9 ATP-binding MRP protein compare
SMc01103 -3.7 -7.1 Ribokinase (EC 2.7.1.15) (from data) conserved
SM_b21174 -3.6 -4.6 phosphate uptake ABC transporter permease compare
SMc01054 -3.6 -5.0 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc04346 -3.5 -4.2 ketol-acid reductoisomerase compare
SMc01881 -3.5 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SM_b21176 -3.4 -5.4 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00641 -3.4 -4.4 D-3-phosphoglycerate dehydrogenase compare
SM_b21175 -3.3 -6.5 phosphate uptake ABC transporter permease compare
SMc03795 -3.1 -2.0 isopropylmalate isomerase small subunit compare
SMc00414 -3.0 -12.8 hypothetical protein compare
SMc03981 -3.0 -4.8 phosphoglycerate kinase compare
SMc02707 -2.9 -4.1 hypothetical protein compare
SMc02138 -2.8 -3.6 acetylornithine transaminase compare
SMc04005 -2.8 -10.4 pyruvate kinase compare
SMc00295 -2.8 -2.1 hypothetical protein compare
SMc00963 -2.7 -4.2 hypothetical protein compare
SMc01430 -2.7 -4.4 acetolactate synthase 3 regulatory subunit compare
SMc02246 -2.6 -1.5 hypothetical protein compare
SMc02574 -2.5 -4.7 imidazoleglycerol-phosphate dehydratase compare
SMc02640 -2.4 -5.6 UDP-glucuronic acid epimerase compare
SMc00334 -2.3 -3.3 cytidylate kinase compare
SMc01124 -2.1 -6.6 PII uridylyl-transferase compare
SMc00511 -2.0 -4.5 D-ribulose-5-phosphate 3-epimerase compare
SMc02833 -1.9 -3.0 penicillin-insensitive murein endopeptidase compare
SMc03967 -1.9 -2.1 Holliday junction resolvase compare
SMc00838 -1.8 -5.2 hypothetical protein compare
SMc01028 -1.8 -13.3 phosphopyruvate hydratase compare
SMc02983 -1.6 -5.5 ornithine, DAP, or arginine decarboxylase compare
SMc01578 -1.6 -11.3 aspartate aminotransferase compare
SMc01622 -1.6 -7.4 oxidoreductase compare
SMc02683 -1.6 -2.1 hypothetical protein compare
SMc00619 -1.5 -1.5 hypothetical protein compare
SMc01441 -1.5 -5.1 membrane bound protease compare
SMc03068 -1.4 -7.5 phosphogluconate dehydratase compare
SMc02140 -1.4 -2.5 phosphate regulon transcriptional regulatory protein compare
SMc03069 -1.4 -3.7 6-phosphogluconolactonase compare
SMc00856 -1.4 -1.5 hypothetical protein compare
SMc04330 -1.4 -3.1 trimethylamine methyltransferase compare
SMc03924 -1.4 -7.4 glycogen synthase compare
SMa0789 -1.4 -4.3 GntR family transcriptional regulator compare
SMc02055 -1.4 -2.1 phytoene synthase compare
SMc02147 -1.4 -5.4 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc01206 -1.4 -1.7 queuine tRNA-ribosyltransferase compare
SMc01440 -1.3 -5.2 hydrolase serine protease transmembrane protein compare
SMc01850 -1.3 -3.6 hypothetical protein compare
SMc02141 -1.3 -2.8 phosphate transporter PhoU compare
SMc02978 -1.3 -3.8 hypothetical protein compare
SMc02084 -1.3 -1.4 biopolymer transport transmembrane protein compare
SMc03993 -1.3 -3.9 hypothetical protein compare
SMc02778 -1.2 -1.2 hydroxyacid aldolase compare
SMc02058 -1.2 -3.4 YAJC protein compare
SMc04348 -1.2 -1.4 transcriptional regulator compare
SMc02112 -1.2 -4.2 hypothetical protein compare
SMc00982 -1.2 -5.1 dioxygenase compare
SM_b20021 -1.2 -1.2 transcriptional regulator compare
SMc02838 -1.2 -4.3 phosphoglyceromutase compare
SMc02115 -1.2 -1.0 hypothetical protein compare
SMc00622 -1.1 -6.2 ribonuclease D protein compare
SMc02685 -1.1 -2.7 hypothetical protein compare
SMc00450 -1.1 -2.3 protoheme IX farnesyltransferase compare
SMc00709 -1.1 -3.2 hypothetical protein compare
SMc02102 -1.1 -3.0 hypothetical protein compare
SMc02719 -1.1 -1.1 transposase compare
SMc01119 -1.1 -1.8 hypothetical protein compare
SMc00288 -1.1 -6.9 signal peptide protein compare
SMc01568 -1.1 -1.0 hypothetical protein compare
SMa1639 -1.1 -1.4 hypothetical protein compare
SMc02227 -1.0 -5.2 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00006 -1.0 -3.0 hypothetical protein compare
SMc03184 -1.0 -1.3 PH adaptation potassium efflux system G transmembrane protein compare
SM_b20953 -1.0 -1.2 hypothetical protein compare
SM_b20994 -1.0 -2.5 hypothetical protein compare
SMc02495 -1.0 -1.8 translaldolase compare
SMc02844 -1.0 -0.9 transcriptional regulator compare
SMc00691 -1.0 -3.8 site-specific tyrosine recombinase XerD compare
SMc00812 -1.0 -1.7 hypothetical protein compare
SMc02451 -1.0 -1.6 hypothetical protein compare
SMc04243 -0.9 -4.8 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc04236 -0.9 -2.2 glycine-rich cell wall structural transmembrane protein compare
SMc02384 -0.9 -3.5 glycosyltransferase transmembrane protein compare
SMc04345 -0.9 -2.4 hypothetical protein compare
SMa1240 -0.9 -1.0 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc01147 -0.9 -1.9 coproporphyrinogen III oxidase compare
SMc01933 -0.9 -0.9 hypothetical protein compare
SMc01091 -0.9 -1.7 hypothetical protein compare
SMc04000 -0.9 -0.6 hypothetical protein compare
SMc05020 -0.9 -1.2 entericidin A precursor compare
SMc00025 -0.9 -4.4 pyruvate phosphate dikinase compare
SMc02308 -0.9 -1.9 hypothetical protein compare
SMc04244 -0.8 -3.7 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc02812 -0.8 -2.1 hypothetical protein compare
SMc02232 -0.8 -2.6 hypothetical protein compare
SMa1017 -0.8 -1.2 hypothetical protein compare
SMc04428 -0.8 -1.4 hypothetical protein compare
SMc03980 -0.8 -3.1 hypothetical protein compare
SMc01842 -0.8 -0.8 methyltransferase transcription regulator protein compare
SMa1779 -0.8 -1.4 hypothetical protein compare
SM_b20655 -0.8 -1.8 hypothetical protein compare
SMc02543 -0.8 -4.1 hypothetical protein compare
SMc02046 -0.8 -1.5 hypothetical protein compare
SMc04361 -0.8 -2.9 hydantoin racemase compare
SMa0112 -0.8 -2.7 hypothetical protein compare
SMc01207 -0.8 -1.3 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02434 -0.8 -2.0 hypothetical protein compare
SMc01947 -0.8 -3.3 hypothetical protein compare
SM_b20823 -0.8 -4.5 cell surface saccharide synthesis protein compare
SM_b21132 -0.8 -1.9 sulfate ABC transporter permease compare
SM_b20927 -0.8 -2.8 hypothetical protein compare
SMc01183 -0.7 -1.0 LexA repressor compare
SMa1902 -0.7 -2.5 hypothetical protein compare
SMc00067 -0.7 -4.0 outer-membranne lipoprotein compare
SMc03100 -0.7 -0.7 hypothetical protein compare
SMa1442 -0.7 -3.2 GntR family transcriptional regulator compare
SMc01187 -0.7 -1.5 rare lipoprotein A compare
SMc04357 -0.7 -2.1 hypothetical protein compare
SMc04245 -0.7 -5.3 high-affinity zinc uptake system ABC transporter protein compare
SMc00809 -0.7 -4.3 signal peptide protein compare
SMc02047 -0.7 -4.2 glycine cleavage system aminomethyltransferase T compare
SMc04296 -0.7 -1.0 cell division protein FtsZ compare
SMc01368 -0.7 -3.0 transport transmembrane protein compare
SM_b21130 -0.7 -3.7 sulfate ABC transporter ATP-binding protein compare
SM_b20509 -0.7 -1.4 transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Ribose in Sinorhizobium meliloti 1021

For carbon source D-Ribose across organisms