Experiment set1IT011 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Paraquat dichloride 0.003 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23145 +8.4 37.0 hypothetical protein compare
CA265_RS17145 +7.8 36.8 malate:quinone oxidoreductase compare
CA265_RS21060 +6.7 32.8 hypothetical protein compare
CA265_RS23525 +6.4 46.1 hypothetical protein compare
CA265_RS16005 +6.0 10.4 hypothetical protein compare
CA265_RS15895 +5.6 22.0 hypothetical protein compare
CA265_RS13195 +5.6 9.0 SAM-dependent methyltransferase compare
CA265_RS19575 +5.5 15.4 glycoside hydrolase compare
CA265_RS22690 +5.3 39.9 hypothetical protein compare
CA265_RS06610 +4.2 34.9 transmembrane HD family protein compare
CA265_RS23565 +4.0 12.3 NADH dehydrogenase compare
CA265_RS08965 +3.9 4.9 thioesterase compare
CA265_RS20785 +3.9 3.5 hypothetical protein compare
CA265_RS20320 +3.8 35.7 hypothetical protein compare
CA265_RS20315 +3.8 32.3 hypothetical protein compare
CA265_RS19940 +3.8 33.7 hypothetical protein compare
CA265_RS15200 +3.6 15.7 hypothetical protein compare
CA265_RS23505 +3.5 7.5 biopolymer transporter ExbD compare
CA265_RS16130 +3.5 12.7 cell division protein FtsX compare
CA265_RS15900 +3.2 3.4 hypothetical protein compare
CA265_RS22630 +3.2 13.7 nucleoside-diphosphate sugar epimerase compare
CA265_RS19605 +3.1 21.5 serine hydrolase compare
CA265_RS15195 +3.1 10.8 hypothetical protein compare
CA265_RS06320 +3.0 22.1 hypothetical protein compare
CA265_RS18770 +3.0 8.0 hypothetical protein compare
CA265_RS19945 +2.9 6.8 hypothetical protein compare
CA265_RS08895 +2.8 13.9 mannose-1-phosphate guanylyltransferase compare
CA265_RS23545 +2.8 7.3 NADH dehydrogenase subunit D compare
CA265_RS20350 +2.8 15.8 gliding motility lipoprotein GldH compare
CA265_RS10595 +2.8 12.2 dicarboxylate/amino acid:cation symporter compare
CA265_RS20790 +2.7 4.4 hypothetical protein compare
CA265_RS20355 +2.7 13.0 hypothetical protein compare
CA265_RS22805 +2.7 11.0 glycosyl transferase compare
CA265_RS06395 +2.7 7.3 hypothetical protein compare
CA265_RS13200 +2.7 5.5 phosphatase PAP2 family protein compare
CA265_RS05070 +2.6 15.8 Na+/H+ antiporter NhaA compare
CA265_RS22800 +2.6 12.5 glycosyl transferase compare
CA265_RS16605 +2.6 20.3 1-pyrroline-5-carboxylate dehydrogenase compare
CA265_RS17495 +2.5 5.2 lipoprotein signal peptidase compare
CA265_RS18135 +2.4 7.0 uroporphyrinogen-III synthase compare
CA265_RS11760 +2.4 5.3 mobilization protein compare
CA265_RS20780 +2.4 6.7 hypothetical protein compare
CA265_RS25110 +2.3 10.7 polyprenyl synthetase compare
CA265_RS21910 +2.3 17.8 glycoside hydrolase compare
CA265_RS14910 +2.3 17.5 ABC transporter ATP-binding protein compare
CA265_RS23510 +2.3 9.3 energy transducer TonB compare
CA265_RS20770 +2.2 3.8 hypothetical protein compare
CA265_RS23190 +2.2 6.6 transcription elongation factor GreA compare
CA265_RS20775 +2.2 3.9 hypothetical protein compare
CA265_RS03630 +2.2 6.0 histidinol-phosphate transaminase compare
CA265_RS24255 +2.2 10.1 sugar kinase compare
CA265_RS10990 +2.1 10.8 hypothetical protein compare
CA265_RS22010 +2.1 1.9 hypothetical protein compare
CA265_RS10170 +2.1 3.3 hypothetical protein compare
CA265_RS14580 +2.1 10.2 cytidylate kinase compare
CA265_RS17200 +2.0 6.2 DNA mismatch repair protein MutL compare
CA265_RS25450 +2.0 4.0 iron-sulfur cluster assembly accessory protein compare
CA265_RS19025 +2.0 6.3 peptidase M23 compare
CA265_RS14485 +2.0 8.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS03085 +2.0 5.6 hypothetical protein compare
CA265_RS22790 +1.9 12.9 hypothetical protein compare
CA265_RS20610 +1.9 2.1 hypothetical protein compare
CA265_RS12665 +1.9 4.0 cold-shock protein compare
CA265_RS03515 +1.8 4.8 Fe-S assembly protein IscX compare
CA265_RS06315 +1.8 10.3 uridine kinase compare
CA265_RS19420 +1.8 3.2 hypothetical protein compare
CA265_RS24980 +1.8 3.1 hypothetical protein compare
CA265_RS09055 +1.8 8.9 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS01005 +1.8 6.7 SAM-dependent methyltransferase compare
CA265_RS08855 +1.7 10.4 MFS transporter compare
CA265_RS23195 +1.7 9.5 HIT family protein compare
CA265_RS12745 +1.7 7.2 NUDIX hydrolase compare
CA265_RS19495 +1.7 9.0 FkbM family methyltransferase compare
CA265_RS15985 +1.7 14.2 mechanosensitive ion channel protein MscS compare
CA265_RS03260 +1.7 10.0 multidrug ABC transporter ATP-binding protein compare
CA265_RS23430 +1.7 4.9 hypothetical protein compare
CA265_RS11605 +1.6 10.3 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS09385 +1.6 3.2 hypothetical protein compare
CA265_RS13255 +1.6 7.9 leucine dehydrogenase compare
CA265_RS15085 +1.6 10.5 hypothetical protein compare
CA265_RS18140 +1.6 6.6 DUF4271 domain-containing protein compare
CA265_RS20660 +1.6 4.1 hypothetical protein compare
CA265_RS18190 +1.6 11.7 cupin compare
CA265_RS21900 +1.6 12.2 two-component sensor histidine kinase compare
CA265_RS19740 +1.6 7.3 gliding motility lipoprotein GldD compare
CA265_RS07460 +1.6 8.6 deoxynucleoside kinase compare
CA265_RS23640 +1.5 11.2 hypothetical protein compare
CA265_RS03160 +1.5 6.8 hydrolase compare
CA265_RS13020 +1.5 8.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS01010 +1.5 4.5 NADP transhydrogenase subunit alpha compare
CA265_RS08205 +1.5 5.0 histidine phosphatase family protein compare
CA265_RS03295 +1.5 10.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS09390 +1.5 4.3 hypothetical protein compare
CA265_RS18115 +1.5 9.2 gliding motility protein GldN compare
CA265_RS04105 +1.5 11.6 siroheme synthase compare
CA265_RS18435 +1.5 9.5 peptide chain release factor 3 compare
CA265_RS18990 +1.5 13.2 cell surface protein SprA compare
CA265_RS21565 +1.4 2.6 cold-shock protein compare
CA265_RS14535 +1.4 3.4 DUF4783 domain-containing protein compare
CA265_RS03290 +1.4 8.8 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS15640 +1.4 8.9 sugar kinase compare
CA265_RS20795 +1.4 2.1 hypothetical protein compare
CA265_RS09840 +1.4 3.3 YajQ family cyclic di-GMP-binding protein compare
CA265_RS19165 +1.4 3.2 serine hydroxymethyltransferase compare
CA265_RS21290 +1.4 4.4 hypothetical protein compare
CA265_RS22425 +1.4 4.6 oxidoreductase compare
CA265_RS16010 +1.4 2.2 short-chain dehydrogenase compare
CA265_RS10905 +1.3 2.5 iron-dependent repressor compare
CA265_RS14825 +1.3 1.9 outer membrane protein assembly factor BamD compare
CA265_RS19220 +1.3 5.9 hypothetical protein compare
CA265_RS09270 +1.3 1.7 hypothetical protein compare
CA265_RS11635 +1.3 5.0 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS18310 +1.3 5.3 thioredoxin family protein compare
CA265_RS02990 +1.3 5.8 mannosyltransferase compare
CA265_RS02435 +1.3 4.6 hypothetical protein compare
CA265_RS10610 +1.3 4.0 hypothetical protein compare
CA265_RS07470 +1.3 2.3 hypothetical protein compare
CA265_RS19330 +1.3 3.7 dTDP-4-dehydrorhamnose reductase compare
CA265_RS18120 +1.3 10.2 gliding motility protein GldM compare
CA265_RS21905 +1.3 5.8 hypothetical protein compare
CA265_RS20055 +1.2 7.6 thiamine phosphate synthase compare
CA265_RS18130 +1.2 9.4 gliding motility-associated lipoprotein compare
CA265_RS23635 +1.2 9.7 gliding motility lipoprotein GldJ compare
CA265_RS09620 +1.2 8.8 FAD-binding oxidoreductase compare
CA265_RS02580 +1.2 3.8 hypothetical protein compare
CA265_RS23560 +1.2 1.3 DNA-binding protein compare
CA265_RS12905 +1.2 5.8 hypothetical protein compare
CA265_RS23985 +1.2 7.4 gliding motility lipoprotein GldB compare
CA265_RS25305 +1.2 1.1 hypothetical protein compare
CA265_RS16115 +1.2 7.8 DEAD/DEAH box helicase compare
CA265_RS15070 +1.2 3.6 hypothetical protein compare
CA265_RS12945 +1.2 8.4 hypothetical protein compare
CA265_RS08890 +1.2 4.7 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS11770 +1.2 4.1 hypothetical protein compare
CA265_RS16090 +1.2 8.5 ribonuclease BN compare
CA265_RS18225 +1.2 6.4 DNA-binding response regulator compare
CA265_RS23605 +1.2 5.5 alkaline phosphatase compare
CA265_RS13750 +1.2 6.0 hypothetical protein compare
CA265_RS15910 +1.2 8.4 hypothetical protein compare
CA265_RS17100 +1.2 3.8 hypothetical protein compare
CA265_RS02200 +1.1 7.4 NUDIX hydrolase compare
CA265_RS04100 +1.1 5.2 uroporphyrinogen-III C-methyltransferase compare
CA265_RS10940 +1.1 8.3 hypothetical protein compare
CA265_RS10750 +1.1 6.1 SMC-Scp complex subunit ScpB compare
CA265_RS23520 +1.1 7.1 phosphate ABC transporter substrate-binding protein compare
CA265_RS15115 +1.1 6.0 porin compare
CA265_RS03110 +1.1 3.9 DUF58 domain-containing protein compare
CA265_RS05655 +1.1 7.7 hypothetical protein compare
CA265_RS15530 +1.1 4.3 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA265_RS06290 +1.1 1.7 hypothetical protein compare
CA265_RS02115 +1.1 4.7 Fur family transcriptional regulator compare
CA265_RS17140 +1.1 4.2 thioredoxin family protein compare
CA265_RS23800 +1.1 6.5 methyltransferase type 12 compare
CA265_RS15170 +1.1 7.9 peptidase M23 compare
CA265_RS13740 +1.1 6.0 cysteine synthase compare
CA265_RS13190 +1.1 3.2 hypothetical protein compare
CA265_RS21195 +1.1 8.6 hypothetical protein compare
CA265_RS18085 +1.0 5.3 hypothetical protein compare
CA265_RS20115 +1.0 6.3 hypothetical protein compare
CA265_RS04095 +1.0 8.0 nitrite reductase compare
CA265_RS20650 +1.0 1.4 hypothetical protein compare
CA265_RS24605 +1.0 1.6 hypothetical protein compare
CA265_RS02605 +1.0 4.3 hypothetical protein compare
CA265_RS18600 +1.0 5.1 hypothetical protein compare
CA265_RS25095 +1.0 6.0 MBL fold metallo-hydrolase compare
CA265_RS21260 +1.0 6.5 hypothetical protein compare
CA265_RS07515 +1.0 6.2 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS17025 +1.0 2.1 hypothetical protein compare
CA265_RS12765 +1.0 5.6 SRPBCC family protein compare
CA265_RS00995 +1.0 3.4 hypothetical protein compare
CA265_RS18950 +1.0 4.6 transcriptional regulator compare
CA265_RS17575 +1.0 6.5 acyl-CoA dehydrogenase compare
CA265_RS20395 +0.9 2.3 hypothetical protein compare
CA265_RS01560 +0.9 1.3 circadian clock protein KaiB compare
CA265_RS04020 +0.9 4.8 hypothetical protein compare
CA265_RS10620 +0.9 5.7 hypothetical protein compare
CA265_RS10235 +0.9 1.4 hypothetical protein compare
CA265_RS09800 +0.9 5.7 chromosome partitioning protein ParA compare
CA265_RS23235 +0.9 2.3 transcriptional regulator compare
CA265_RS20705 +0.9 2.0 conjugal transfer protein compare
CA265_RS09640 +0.9 1.8 ATPase compare
CA265_RS16225 +0.9 2.1 hypothetical protein compare
CA265_RS01800 +0.9 4.9 ABC transporter permease compare
CA265_RS03610 +0.9 2.3 imidazole glycerol phosphate synthase subunit HisF compare
CA265_RS25375 +0.9 4.8 hypothetical protein compare
CA265_RS21265 +0.9 4.1 hypothetical protein compare
CA265_RS09120 +0.9 5.3 hypothetical protein compare
CA265_RS08975 +0.9 3.8 hypothetical protein compare
CA265_RS08880 +0.9 5.6 chromate transporter compare
CA265_RS08020 +0.9 4.4 hypothetical protein compare
CA265_RS12780 +0.9 1.8 hypothetical protein compare
CA265_RS16525 +0.9 3.3 FAD-dependent oxidoreductase compare
CA265_RS11775 +0.9 1.6 hypothetical protein compare
CA265_RS22005 +0.8 2.7 S9 family peptidase compare
CA265_RS25365 +0.8 3.8 glycerol acyltransferase compare
CA265_RS25370 +0.8 4.2 glycosyl transferase family 2 compare
CA265_RS17555 +0.8 6.0 hypothetical protein compare
CA265_RS03625 +0.8 1.9 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
CA265_RS20990 +0.8 1.8 sugar transporter compare
CA265_RS18275 +0.8 2.4 pyrophosphatase compare


Specific Phenotypes

For 46 genes in this experiment

For stress Paraquat dichloride in Pedobacter sp. GW460-11-11-14-LB5

For stress Paraquat dichloride across organisms