Experiment set1IT011 for Phocaeicola vulgatus CL09T03C04
Mucin from porcine stomach type III 5 mg/ml carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Mucin from porcine stomach type III (5 mg/ml)
Culturing: Bvulgatus_CL09T03C04_ML5, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 34 (C), shaken=0 rpm
By: Surya Tripathi on 12/22/21
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 1 genes in this experiment
For carbon source Mucin from porcine stomach type III in Phocaeicola vulgatus CL09T03C04
For carbon source Mucin from porcine stomach type III across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Deoxyribose and Deoxynucleoside Catabolism | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| 2-deoxy-D-ribose degradation I | 3 | 2 | 1 |
| 2-deoxy-α-D-ribose 1-phosphate degradation | 3 | 1 | 1 |
| superpathway of pyrimidine deoxyribonucleosides degradation | 6 | 3 | 1 |
| superpathway of purine deoxyribonucleosides degradation | 7 | 4 | 1 |