Experiment set1IT010 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6 -4.3 -3.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1624 -3.9 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1408 -3.8 -4.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2880 -3.7 -11.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1067 -3.6 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1534 -3.5 -17.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1831 -3.4 -11.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_6035 -3.4 -4.6 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_5665 -3.3 -5.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2338 -3.3 -6.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_742 -3.3 -7.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1533 -3.3 -7.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1626 -3.3 -7.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2879 -3.3 -7.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3038 -3.2 -5.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2549 -3.1 -9.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2545 -3.1 -12.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2303 -3.1 -14.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5666 -3.1 -3.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_6031 -3.1 -5.2 Ribokinase (EC 2.7.1.15) (from data) conserved
Pf1N1B4_6034 -3.0 -5.7 D-ribose ABC transporter, ATPase component RbsA (from data) conserved
Pf1N1B4_2878 -3.0 -6.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1830 -2.9 -8.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_15 -2.9 -4.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_12 -2.9 -7.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1307 -2.9 -2.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2548 -2.9 -7.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2384 -2.8 -9.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2858 -2.8 -11.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1434 -2.7 -8.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2850 -2.7 -7.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2526 -2.7 -15.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_1315 -2.6 -8.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1565 -2.5 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2272 -2.5 -4.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2009 -2.5 -5.5 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_3468 -2.5 -2.8 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2337 -2.4 -5.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_58 -2.4 -6.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_3697 -2.3 -6.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1617 -2.2 -7.7 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1147 -2.2 -7.1 Fructose repressor FruR, LacI family compare
Pf1N1B4_350 -2.2 -6.8 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4065 -2.2 -7.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_847 -2.2 -7.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_762 -2.2 -6.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3751 -2.1 -2.3 FIG00953060: hypothetical protein compare
Pf1N1B4_257 -2.0 -6.2 sensor histidine kinase/response regulator compare
Pf1N1B4_1906 -2.0 -3.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3812 -1.9 -7.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2011 -1.9 -8.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_327 -1.9 -2.7 hypothetical protein compare
Pf1N1B4_1627 -1.8 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2400 -1.8 -2.9 FIG00955006: hypothetical protein compare
Pf1N1B4_3849 -1.8 -4.1 Transcriptional regulator, GntR family compare
Pf1N1B4_2010 -1.7 -5.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_4446 -1.7 -2.8 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_1317 -1.6 -2.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_1568 -1.4 -2.0 Twin-arginine translocation protein TatB compare
Pf1N1B4_886 -1.4 -2.2 FIG137478: Hypothetical protein compare
Pf1N1B4_4678 -1.4 -3.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_3506 -1.4 -5.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_6032 -1.4 -2.3 Ribose operon repressor compare
Pf1N1B4_5330 -1.3 -1.9 hypothetical protein compare
Pf1N1B4_3191 -1.3 -2.0 FIG00953505: hypothetical protein compare
Pf1N1B4_2859 -1.3 -9.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4918 -1.3 -1.9 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_2039 -1.3 -2.2 hypothetical protein compare
Pf1N1B4_952 -1.3 -2.7 Cell division protein MraZ compare
Pf1N1B4_4715 -1.3 -2.3 Transcriptional regulator compare
Pf1N1B4_4257 -1.2 -2.1 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2105 -1.2 -2.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_6041 -1.2 -1.5 Carbon storage regulator compare
Pf1N1B4_3906 -1.2 -2.4 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_3766 -1.2 -5.0 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_3081 -1.2 -10.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_539 -1.2 -2.1 Transcriptional regulators compare
Pf1N1B4_4218 -1.2 -2.8 Multidrug resistance protein A compare
Pf1N1B4_2547 -1.2 -2.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1566 -1.2 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1958 -1.2 -2.0 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1180 -1.2 -2.1 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_4397 -1.2 -2.2 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_2794 -1.2 -2.0 FIG00953595: hypothetical protein compare
Pf1N1B4_4040 -1.1 -2.4 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2706 -1.1 -2.4 FIG00954871: hypothetical protein compare
Pf1N1B4_3525 -1.1 -2.0 hydrolase, alpha/beta fold family compare
Pf1N1B4_962 -1.1 -6.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_5815 -1.1 -2.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Pf1N1B4_4870 -1.1 -1.8 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_961 -1.1 -8.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_2208 -1.1 -4.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_3390 -1.0 -1.8 RNA polymerase sigma factor RpoE compare
Pf1N1B4_4459 -1.0 -2.0 Thermostable hemolysin delta-VPH compare
Pf1N1B4_960 -1.0 -6.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_5906 -1.0 -1.5 Esterase/lipase compare
Pf1N1B4_3467 -1.0 -2.0 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_590 -1.0 -5.6 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3119 -1.0 -2.0 Holin compare
Pf1N1B4_4273 -1.0 -3.1 Predicted transcriptional regulator of the myo-inositol catabolic operon compare
Pf1N1B4_4728 -1.0 -3.5 Na+/H+ antiporter NhaB compare
Pf1N1B4_1234 -0.9 -2.6 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1610 -0.9 -2.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2456 -0.9 -2.3 Sarcosine oxidase delta subunit (EC 1.5.3.1) compare
Pf1N1B4_3802 -0.9 -1.8 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_5574 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_2284 -0.9 -2.9 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_3518 -0.9 -1.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1569 -0.9 -6.2 Twin-arginine translocation protein TatC compare
Pf1N1B4_1126 -0.9 -1.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_2874 -0.9 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_348 -0.9 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_1936 -0.9 -3.4 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4103 -0.9 -1.6 Flagellar synthesis regulator FleN compare
Pf1N1B4_5137 -0.8 -4.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_4153 -0.8 -2.0 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf1N1B4_4640 -0.8 -2.1 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_5299 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_1837 -0.8 -1.0 Osmotically inducible protein C compare
Pf1N1B4_2527 -0.8 -4.6 ApaG protein compare
Pf1N1B4_1561 -0.8 -1.9 FIG00954300: hypothetical protein compare
Pf1N1B4_4553 -0.8 -2.1 FIG00959354: hypothetical protein compare
Pf1N1B4_3713 -0.8 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3531 -0.8 -1.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4123 -0.8 -1.5 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_4717 -0.8 -1.3 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_412 -0.8 -1.8 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_5187 -0.8 -1.0 5S RNA compare
Pf1N1B4_2380 -0.8 -6.3 Cytochrome B561 compare
Pf1N1B4_5607 -0.8 -2.1 C4-dicarboxylate transport protein compare
Pf1N1B4_4253 -0.8 -1.4 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1113 -0.8 -3.3 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1057 -0.8 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2090 -0.8 -2.1 FIG00959590: hypothetical protein compare
Pf1N1B4_2486 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_1441 -0.8 -5.2 Putative esterase, FIGfam005057 compare
Pf1N1B4_4030 -0.8 -1.5 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2145 -0.8 -1.0 Translation initiation inhibitor compare
Pf1N1B4_1878 -0.8 -4.6 Cytochrome c4 compare
Pf1N1B4_2343 -0.8 -2.8 Twitching motility protein PilT compare
Pf1N1B4_2401 -0.8 -0.9 Lipoprotein, putative compare
Pf1N1B4_2435 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_1544 -0.8 -4.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_652 -0.8 -4.3 Sensory box histidine kinase compare
Pf1N1B4_2487 -0.8 -4.1 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_4517 -0.8 -1.5 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_3248 -0.7 -2.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf1N1B4_4627 -0.7 -1.3 FIG00957600: hypothetical protein compare
Pf1N1B4_5074 -0.7 -1.5 Gluconate permease compare
Pf1N1B4_5452 -0.7 -2.7 hypothetical protein compare
Pf1N1B4_4921 -0.7 -1.7 Haloacid dehalogenase, type II compare
Pf1N1B4_3927 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_1554 -0.7 -3.6 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_236 -0.7 -1.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_490 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4392 -0.7 -1.9 MocE compare
Pf1N1B4_5769 -0.7 -1.1 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_2912 -0.7 -1.2 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_868 -0.7 -3.0 tRNA:Cm32/Um32 methyltransferase compare
Pf1N1B4_3889 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_3685 -0.7 -2.1 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_5989 -0.7 -1.6 FIG067310: hypothetical protein compare
Pf1N1B4_4603 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_564 -0.7 -1.7 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_1365 -0.7 -2.2 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_3799 -0.7 -1.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_1613 -0.7 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_2021 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_2381 -0.7 -5.2 Protein yceI precursor compare
Pf1N1B4_5153 -0.7 -2.9 Putative membrane-bound ClpP-class protease associated with aq_911 compare
Pf1N1B4_611 -0.7 -1.7 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_678 -0.7 -3.7 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3578 -0.7 -2.0 Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45) compare
Pf1N1B4_4676 -0.7 -2.5 Alpha-amylase (EC 3.2.1.1) compare
Pf1N1B4_1781 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_4835 -0.7 -1.1 Carbon starvation protein A compare
Pf1N1B4_1590 -0.7 -2.8 Histidine utilization repressor compare
Pf1N1B4_4853 -0.7 -1.9 Glycosyltransferase compare
Pf1N1B4_4761 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_3795 -0.7 -1.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_4276 -0.7 -2.5 5-deoxy-glucuronate isomerase (EC 5.3.1.-) compare
Pf1N1B4_1159 -0.7 -1.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4412 -0.7 -1.8 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_3305 -0.7 -1.6 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_2734 -0.7 -1.1 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_1334 -0.7 -1.1 FIG00955840: hypothetical protein compare
Pf1N1B4_4939 -0.7 -1.9 sodium/hydrogen exchanger family protein compare
Pf1N1B4_5926 -0.7 -4.4 hypothetical protein compare
Pf1N1B4_692 -0.7 -2.8 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_2948 -0.7 -1.3 FIG00954698: hypothetical protein compare
Pf1N1B4_2674 -0.6 -1.0 hypothetical protein compare
Pf1N1B4_4926 -0.6 -2.4 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
Pf1N1B4_1353 -0.6 -2.1 Urease alpha subunit (EC 3.5.1.5) compare
Pf1N1B4_4829 -0.6 -1.8 Membrane protein, putative compare
Pf1N1B4_1235 -0.6 -2.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_438 -0.6 -2.1 hypothetical protein compare
Pf1N1B4_3745 -0.6 -1.6 Thiamin ABC transporter, transmembrane component compare
Pf1N1B4_2736 -0.6 -1.5 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_3710 -0.6 -2.4 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf1N1B4_2465 -0.6 -1.4 Two-component response regulator CreB compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N1B4

For carbon source D-Ribose across organisms