Experiment set1IT010 for Sinorhizobium meliloti 1021

Compare to:

L-Rhamnose monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02766 -9.1 -6.3 tryptophan synthase subunit beta compare
SMc01726 -8.8 -6.1 acetylglutamate kinase compare
SMc02767 -8.7 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01843 -8.4 -8.2 5,10-methylenetetrahydrofolate reductase compare
SMc04405 -8.4 -5.8 3-isopropylmalate dehydrogenase compare
SMc02899 -8.4 -8.2 prephenate dehydratase compare
SMc02245 -8.3 -5.7 dihydroorotate dehydrogenase 2 compare
SMc02725 -8.2 -5.7 anthranilate synthase compare
SMc00236 -8.2 -5.7 Indole-3-glycerol phosphate synthase compare
SMc03797 -8.2 -8.0 homoserine O-succinyltransferase compare
SMc02572 -8.0 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
SMc00495 -8.0 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc00917 -8.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00993 -7.9 -5.5 phosphoribosylamine--glycine ligase compare
SMc02569 -7.9 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc01801 -7.9 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02717 -7.9 -5.4 2-isopropylmalate synthase compare
SMc00235 -7.7 -7.5 anthranilate phosphoribosyltransferase compare
SMc04045 -7.6 -5.2 dihydroxy-acid dehydratase compare
SMc01494 -7.6 -10.4 phosphoserine phosphatase compare
SMc04002 -7.5 -9.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc03777 -7.4 -5.1 gamma-glutamyl phosphate reductase compare
SMc02123 -7.3 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00614 -7.3 -7.1 phosphoribosylglycinamide formyltransferase compare
SMc00488 -7.2 -17.5 phosphoribosylformylglycinamidine synthase II compare
SMc03823 -7.1 -11.8 isopropylmalate isomerase large subunit compare
SMc02217 -6.9 -6.8 O-succinylhomoserine sulfhydrylase compare
SMc04028 -6.9 -16.2 glutamate synthase compare
SMc00640 -6.9 -9.5 phosphoserine aminotransferase compare
SMc02765 -6.9 -11.6 tryptophan synthase subunit alpha compare
SMc01431 -6.8 -12.2 acetolactate synthase 3 catalytic subunit compare
SMc01004 -6.8 -10.6 phosphoribosyl-AMP cyclohydrolase compare
SMc00711 -6.7 -5.6 cyclohexadienyl dehydrogenase compare
SMc00293 -6.7 -15.5 homoserine dehydrogenase compare
SMa1635 -6.6 -2.6 hypothetical protein compare
SMc03112 -6.6 -18.6 B12-dependent methionine synthase compare
SMc00412 -6.6 -4.5 orotidine 5'-phosphate decarboxylase compare
SMc03776 -6.6 -4.5 gamma-glutamyl kinase compare
SMc00554 -6.5 -7.7 amidophosphoribosyltransferase compare
SMc00918 -6.1 -11.5 ATP phosphoribosyltransferase regulatory subunit compare
SMc01361 -6.1 -7.2 dihydroorotase compare
SMc04026 -6.0 -8.4 glutamate synthase compare
SMc00493 -6.0 -9.1 phosphoribosylformylglycinamidine synthase I compare
SMc01054 -5.9 -4.9 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01881 -5.8 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02137 -5.8 -6.5 ornithine carbamoyltransferase compare
SMc04088 -5.8 -9.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02755 -5.8 -6.9 S-adenosyl-L-homocysteine hydrolase compare
SMc03895 -5.8 -20.6 pyruvate carboxylase compare
SMc02165 -5.7 -9.6 orotate phosphoribosyltransferase compare
SMc00815 -5.6 -3.7 inosine 5'-monophosphate dehydrogenase compare
SMc00092 -5.6 -12.6 phosphoadenosine phosphosulfate reductase compare
SM_b21175 -5.3 -4.0 phosphate uptake ABC transporter permease compare
SMc02166 -5.2 -11.4 dihydroorotase compare
SMc01360 -5.2 -5.1 aspartate carbamoyltransferase catalytic subunit compare
SMc02124 -5.1 -16.0 nitrite reductase compare
SMc02307 -5.1 -9.7 histidinol dehydrogenase compare
SMc00876 -5.1 -7.7 ATP-binding MRP protein compare
SMc00131 -5.0 -17.2 transcriptional regulator compare
SM_b21174 -5.0 -6.3 phosphate uptake ABC transporter permease compare
SMc03826 -5.0 -4.9 argininosuccinate synthase compare
SMc00091 -5.0 -15.3 sulfate adenylyltransferase compare
SMc01569 -4.9 -2.6 carbamoyl phosphate synthase small subunit compare
SMc00615 -4.8 -5.9 phosphoribosylaminoimidazole synthetase compare
SMc02138 -4.8 -6.9 acetylornithine transaminase compare
SM_b21177 -4.8 -9.6 phosphate uptake ABC transporter ATP-binding protein compare
SMc00641 -4.7 -7.6 D-3-phosphoglycerate dehydrogenase compare
SMc00294 -4.7 -12.1 aminotransferase compare
SMc03070 -4.7 -11.0 glucose-6-phosphate 1-dehydrogenase compare
SM_b21176 -4.7 -6.4 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00963 -4.7 -6.5 hypothetical protein compare
SMc01215 -4.6 -4.5 carbamoyl phosphate synthase large subunit compare
SMc02570 -4.6 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01770 -4.6 -2.1 serine hydroxymethyltransferase compare
SMc02322 -4.6 -13.4 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) (from data) conserved
SMc01053 -4.6 -5.0 siroheme synthase compare
SMc04001 -4.5 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00494 -4.5 -3.0 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc03978 -4.4 -4.3 transketolase compare
SMc00090 -4.4 -11.8 sulfate adenylyltransferase compare
SMc00017 -4.4 -2.3 homoserine kinase compare
SMc03795 -4.3 -2.3 isopropylmalate isomerase small subunit compare
SMc03003 -4.3 -14.3 Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) (from data) conserved
SMc01880 -4.2 -5.0 pantoate--beta-alanine ligase compare
SMc03763 -4.0 -4.7 cytosine-specific methyltransferase compare
SMc03001 -3.9 -7.6 ABC transporter permease conserved
SMc03981 -3.7 -3.6 phosphoglycerate kinase compare
SMc02321 -3.7 -11.1 L-rhamnose isomerase (EC 5.3.1.14) (from data) conserved
SMc02574 -3.5 -5.1 imidazoleglycerol-phosphate dehydratase compare
SMc00334 -3.4 -3.1 cytidylate kinase compare
SMc03229 -3.3 -2.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc01850 -3.3 -4.1 hypothetical protein compare
SMc03000 -3.3 -10.1 ABC transporter permease conserved
SMc00414 -3.2 -13.2 hypothetical protein compare
SMc02707 -3.2 -4.4 hypothetical protein compare
SMc04346 -3.1 -3.7 ketol-acid reductoisomerase compare
SMc01206 -3.1 -2.9 queuine tRNA-ribosyltransferase compare
SMc02324 -3.1 -13.9 periplasmic binding ABC transporter protein conserved
SMc03002 -3.1 -5.9 hypothetical protein conserved
SMc03979 -3.0 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01852 -3.0 -10.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00295 -2.9 -2.1 hypothetical protein compare
SMc02325 -2.8 -9.9 ABC transporter ATP-binding protein conserved
SMc02246 -2.7 -1.5 hypothetical protein compare
SMc02323 -2.7 -6.1 transcriptional regulator conserved
SMc01207 -2.5 -2.8 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc01124 -2.4 -8.7 PII uridylyl-transferase compare
SMc02983 -2.4 -7.5 ornithine, DAP, or arginine decarboxylase compare
SMc01147 -2.3 -4.6 coproporphyrinogen III oxidase compare
SMc01578 -2.3 -14.2 aspartate aminotransferase compare
SMc01440 -2.2 -8.1 hydrolase serine protease transmembrane protein compare
SMc02115 -2.2 -1.4 hypothetical protein compare
SMc01441 -2.0 -7.3 membrane bound protease compare
SMc03967 -1.9 -1.6 Holliday junction resolvase compare
SMc00821 -1.8 -2.4 hypothetical protein compare
SMc00492 -1.8 -1.5 hypothetical protein compare
SMc02833 -1.8 -2.4 penicillin-insensitive murein endopeptidase compare
SMc01430 -1.7 -3.0 acetolactate synthase 3 regulatory subunit compare
SMc01842 -1.7 -1.8 methyltransferase transcription regulator protein compare
SM_b20850 -1.7 -6.8 L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) compare
SMc00838 -1.6 -5.8 hypothetical protein compare
SMc01845 -1.6 -3.0 transglycosylase transmembrane protein compare
SMc02102 -1.6 -4.5 hypothetical protein compare
SMc02753 -1.6 -2.0 PTS system transporter subunit IIA compare
SMc00982 -1.6 -5.0 dioxygenase compare
SMc01023 -1.5 -3.9 triosephosphate isomerase compare
SMc00511 -1.5 -5.2 D-ribulose-5-phosphate 3-epimerase compare
SMc01613 -1.5 -4.9 ribose-5-phosphate isomerase B compare
SMc02909 -1.5 -2.7 transglycosylase transmembrane protein compare
SMc02495 -1.4 -2.1 translaldolase compare
SMa0144 -1.4 -1.3 hypothetical protein compare
SMc02140 -1.4 -2.3 phosphate regulon transcriptional regulatory protein compare
SM_b21192 -1.4 -7.2 fructose-1,6-bisphosphate aldolase compare
SMc02147 -1.4 -5.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02641 -1.3 -5.2 UDP-glucose 6-dehydrogenase compare
SMc02724 -1.3 -3.4 hypothetical protein compare
SMc00914 -1.3 -4.1 oxidoreductase compare
SMc02055 -1.3 -1.9 phytoene synthase compare
SMc02141 -1.3 -4.4 phosphate transporter PhoU compare
SMc00361 -1.3 -2.7 hypothetical protein compare
SMc02844 -1.3 -1.2 transcriptional regulator compare
SMc03974 -1.3 -3.9 hypothetical protein compare
SMc04005 -1.2 -5.5 pyruvate kinase compare
SMc01342 -1.2 -5.0 hypothetical protein compare
SMc01622 -1.2 -4.4 oxidoreductase compare
SMc02685 -1.1 -2.5 hypothetical protein compare
SMc02058 -1.1 -3.6 YAJC protein compare
SMc04453 -1.1 -1.3 hypothetical protein compare
SMc00450 -1.1 -1.9 protoheme IX farnesyltransferase compare
SMc02425 -1.1 -2.9 transcriptional regulator compare
SMc02435 -1.1 -2.2 methyltransferase compare
SMc04348 -1.1 -1.2 transcriptional regulator compare
SMc01368 -1.1 -4.1 transport transmembrane protein compare
SMc02582 -1.1 -2.7 hypothetical protein compare
SMc00369 -1.1 -1.6 oxidoreductase compare
SMc04213 -1.0 -1.8 diacylglycerol kinase compare
SMc01501 -1.0 -2.6 mannitol 2-dehydrogenase compare
SMc03850 -1.0 -1.4 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02505 -1.0 -1.5 hypothetical protein compare
SMc04243 -1.0 -5.6 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc02172 -1.0 -4.9 transcriptional regulator compare
SMc03949 -1.0 -2.7 nitrogen regulatory protein compare
SMc03242 -0.9 -2.1 GTP-binding protein compare
SMc03980 -0.9 -4.2 hypothetical protein compare
SMc04244 -0.9 -3.4 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc02227 -0.9 -5.1 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc02640 -0.9 -4.1 UDP-glucuronic acid epimerase compare
SMc02683 -0.9 -1.9 hypothetical protein compare
SMc02980 -0.9 -1.4 hypothetical protein compare
SMc02659 -0.9 -2.8 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc00288 -0.9 -5.2 signal peptide protein compare
SMc01208 -0.9 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SM_b20823 -0.9 -5.4 cell surface saccharide synthesis protein compare
SMc00726 -0.9 -0.8 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc03111 -0.9 -5.9 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc02543 -0.9 -4.0 hypothetical protein compare
SMc00882 -0.9 -3.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SM_b21132 -0.9 -2.8 sulfate ABC transporter permease compare
SMc04432 -0.9 -2.6 hypothetical protein compare
SMc02451 -0.9 -1.7 hypothetical protein compare
SMc02694 -0.9 -1.4 ATP-dependent Clp protease adaptor compare
SMc03993 -0.9 -4.0 hypothetical protein compare
SMc02812 -0.8 -2.9 hypothetical protein compare
SMc03069 -0.8 -2.3 6-phosphogluconolactonase compare
SMc00579 -0.8 -4.1 dimethyladenosine transferase compare
SMc01468 -0.8 -1.3 chemotaxis protein compare
SMc00970 -0.8 -1.7 exodeoxyribonuclease VII small subunit compare
SMc02985 -0.8 -4.5 hypothetical protein compare
SMa0760 -0.8 -2.1 FixT2 anti-kinase compare
SM_b20955 -0.8 -2.1 endo-beta-1,3-1,4-glycanase compare
SMc02573 -0.8 -0.9 hypothetical protein compare
SMc00356 -0.8 -4.0 lysyl-tRNA synthetase compare
SMc03127 -0.8 -1.4 ABC transporter permease compare
SMc04245 -0.8 -5.5 high-affinity zinc uptake system ABC transporter protein compare
SMa0789 -0.8 -2.1 GntR family transcriptional regulator compare
SMa1595 -0.8 -3.0 hypothetical protein compare
SMc02407 -0.8 -3.5 hypothetical protein compare
SMc00067 -0.8 -5.2 outer-membranne lipoprotein compare
SM_b20834 -0.8 -5.1 surface saccharide synthesis protein compare
SMc02112 -0.7 -3.4 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Rhamnose monohydrate in Sinorhizobium meliloti 1021

For carbon source L-Rhamnose monohydrate across organisms