Experiment set1IT010 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Paraquat dichloride 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS15895 +1.5 5.9 hypothetical protein compare
CA265_RS16005 +1.5 9.0 hypothetical protein compare
CA265_RS13195 +1.3 1.3 SAM-dependent methyltransferase compare
CA265_RS17145 +1.3 7.0 malate:quinone oxidoreductase compare
CA265_RS23145 +1.2 3.5 hypothetical protein compare
CA265_RS20315 +1.2 10.5 hypothetical protein compare
CA265_RS20320 +1.2 11.2 hypothetical protein compare
CA265_RS06610 +1.2 10.3 transmembrane HD family protein compare
CA265_RS23525 +1.2 7.8 hypothetical protein compare
CA265_RS15200 +1.1 5.5 hypothetical protein compare
CA265_RS22805 +1.1 7.4 glycosyl transferase compare
CA265_RS19575 +1.1 3.4 glycoside hydrolase compare
CA265_RS21060 +1.1 3.5 hypothetical protein compare
CA265_RS22690 +1.0 8.0 hypothetical protein compare
CA265_RS19605 +0.9 5.4 serine hydrolase compare
CA265_RS18275 +0.9 2.4 pyrophosphatase compare
CA265_RS19940 +0.8 7.0 hypothetical protein compare
CA265_RS19465 +0.8 3.3 protein tyrosine phosphatase compare
CA265_RS16105 +0.8 2.1 hypothetical protein compare
CA265_RS24385 +0.8 2.6 GNAT family N-acetyltransferase compare
CA265_RS04885 +0.8 1.6 tRNA-Gly compare
CA265_RS14825 +0.8 1.8 outer membrane protein assembly factor BamD compare
CA265_RS24940 +0.7 3.6 hypothetical protein compare
CA265_RS13985 +0.7 2.7 hypothetical protein compare
CA265_RS10595 +0.7 3.8 dicarboxylate/amino acid:cation symporter compare
CA265_RS03385 +0.7 2.4 hypothetical protein compare
CA265_RS18225 +0.7 5.0 DNA-binding response regulator compare
CA265_RS22800 +0.7 4.5 glycosyl transferase compare
CA265_RS20610 +0.7 1.8 hypothetical protein compare
CA265_RS20395 +0.7 1.8 hypothetical protein compare
CA265_RS18495 +0.6 1.7 hypothetical protein compare
CA265_RS15195 +0.6 3.3 hypothetical protein compare
CA265_RS17940 +0.6 3.7 hypothetical protein compare
CA265_RS16130 +0.6 2.0 cell division protein FtsX compare
CA265_RS01975 +0.6 2.4 cell division protein compare
CA265_RS20350 +0.6 3.3 gliding motility lipoprotein GldH compare
CA265_RS12745 +0.6 2.8 NUDIX hydrolase compare
CA265_RS12855 +0.6 2.3 hypothetical protein compare
CA265_RS07755 +0.6 1.3 hypothetical protein compare
CA265_RS23665 +0.6 3.0 hypothetical protein compare
CA265_RS18770 +0.6 3.5 hypothetical protein compare
CA265_RS14770 +0.6 2.5 hypothetical protein compare
CA265_RS09055 +0.6 4.2 N-acetylmuramoyl-L-alanine amidase compare
CA265_RS19955 +0.6 1.5 hypothetical protein compare
CA265_RS22010 +0.6 2.0 hypothetical protein compare
CA265_RS23510 +0.6 2.3 energy transducer TonB compare
CA265_RS14580 +0.6 3.9 cytidylate kinase compare
CA265_RS18190 +0.6 4.5 cupin compare
CA265_RS13255 +0.6 3.1 leucine dehydrogenase compare
CA265_RS23565 +0.6 0.8 NADH dehydrogenase compare
CA265_RS19945 +0.6 3.1 hypothetical protein compare
CA265_RS01770 +0.6 1.9 hypothetical protein compare
CA265_RS06010 +0.6 2.3 hypothetical protein compare
CA265_RS25375 +0.6 3.0 hypothetical protein compare
CA265_RS18950 +0.6 2.8 transcriptional regulator compare
CA265_RS17115 +0.5 2.3 arsenate reductase compare
CA265_RS10610 +0.5 3.4 hypothetical protein compare
CA265_RS17555 +0.5 4.1 hypothetical protein compare
CA265_RS19485 +0.5 2.9 hypothetical protein compare
CA265_RS10695 +0.5 2.1 hypothetical protein compare
CA265_RS15280 +0.5 3.4 glycine C-acetyltransferase compare
CA265_RS07515 +0.5 3.8 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS21255 +0.5 4.0 hypothetical protein compare
CA265_RS12665 +0.5 1.1 cold-shock protein compare
CA265_RS20775 +0.5 1.8 hypothetical protein compare
CA265_RS05070 +0.5 2.6 Na+/H+ antiporter NhaA compare
CA265_RS00335 +0.5 0.8 hypothetical protein compare
CA265_RS06320 +0.5 3.8 hypothetical protein compare
CA265_RS21690 +0.5 2.8 hypothetical protein compare
CA265_RS08135 +0.5 3.3 amidohydrolase compare
CA265_RS07785 +0.5 2.2 hypothetical protein compare
CA265_RS20525 +0.5 1.3 hypothetical protein compare
CA265_RS20785 +0.5 1.8 hypothetical protein compare
CA265_RS20770 +0.5 2.5 hypothetical protein compare
CA265_RS01010 +0.5 2.9 NADP transhydrogenase subunit alpha compare
CA265_RS03085 +0.5 2.8 hypothetical protein compare
CA265_RS21290 +0.5 2.3 hypothetical protein compare
CA265_RS02605 +0.5 3.7 hypothetical protein compare
CA265_RS18140 +0.5 3.3 DUF4271 domain-containing protein compare
CA265_RS03125 +0.5 1.1 hypothetical protein compare
CA265_RS22790 +0.5 3.2 hypothetical protein compare
CA265_RS09385 +0.5 1.9 hypothetical protein compare
CA265_RS08855 +0.5 3.6 MFS transporter compare
CA265_RS13200 +0.5 2.4 phosphatase PAP2 family protein compare
CA265_RS23545 +0.5 1.0 NADH dehydrogenase subunit D compare
CA265_RS21910 +0.5 3.4 glycoside hydrolase compare
CA265_RS20205 +0.5 3.0 very short patch repair endonuclease compare
CA265_RS14910 +0.5 3.1 ABC transporter ATP-binding protein compare
CA265_RS09425 +0.5 1.3 hypothetical protein compare
CA265_RS00830 +0.5 1.9 hypothetical protein compare
CA265_RS05940 +0.5 2.0 hypothetical protein compare
CA265_RS08895 +0.4 3.5 mannose-1-phosphate guanylyltransferase compare
CA265_RS24945 +0.4 2.0 hypothetical protein compare
CA265_RS18035 +0.4 2.0 hypothetical protein compare
CA265_RS08890 +0.4 2.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS15900 +0.4 1.9 hypothetical protein compare
CA265_RS25435 +0.4 1.2 hypothetical protein compare
CA265_RS19165 +0.4 1.6 serine hydroxymethyltransferase compare
CA265_RS01005 +0.4 2.6 SAM-dependent methyltransferase compare
CA265_RS24995 +0.4 2.6 hypothetical protein compare
CA265_RS09840 +0.4 1.7 YajQ family cyclic di-GMP-binding protein compare
CA265_RS20790 +0.4 2.2 hypothetical protein compare
CA265_RS16195 +0.4 2.6 hypothetical protein compare
CA265_RS00490 +0.4 2.4 hypothetical protein compare
CA265_RS00655 +0.4 2.1 RNA polymerase subunit sigma-24 compare
CA265_RS19615 +0.4 2.3 metal-dependent hydrolase compare
CA265_RS23045 +0.4 1.1 cold-shock protein compare
CA265_RS21295 +0.4 1.4 hypothetical protein compare
CA265_RS17575 +0.4 3.1 acyl-CoA dehydrogenase compare
CA265_RS23195 +0.4 2.5 HIT family protein compare
CA265_RS24920 +0.4 1.4 hypothetical protein compare
CA265_RS20075 +0.4 2.0 hypothetical protein compare
CA265_RS17560 +0.4 2.9 peptidylprolyl isomerase compare
CA265_RS09280 +0.4 2.2 diguanylate cyclase compare
CA265_RS15170 +0.4 3.0 peptidase M23 compare
CA265_RS04105 +0.4 3.1 siroheme synthase compare
CA265_RS22425 +0.4 1.6 oxidoreductase compare
CA265_RS06930 +0.4 1.5 hypothetical protein compare
CA265_RS22745 +0.4 1.5 hypothetical protein compare
CA265_RS14410 +0.4 3.0 4-amino-4-deoxychorismate lyase compare
CA265_RS18865 +0.4 1.8 hypothetical protein compare
CA265_RS07470 +0.4 1.1 hypothetical protein compare
CA265_RS08915 +0.4 2.5 hypothetical protein compare
CA265_RS24815 +0.4 1.2 hypothetical protein compare
CA265_RS25110 +0.4 2.1 polyprenyl synthetase compare
CA265_RS16305 +0.4 1.2 stationary phase survival protein SurE compare
CA265_RS00885 +0.4 2.3 hypothetical protein compare
CA265_RS20190 +0.4 1.9 thiamine biosynthesis protein ThiF compare
CA265_RS15070 +0.4 1.4 hypothetical protein compare
CA265_RS10750 +0.4 2.4 SMC-Scp complex subunit ScpB compare
CA265_RS11635 +0.4 2.0 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS14390 +0.4 1.8 hypothetical protein compare
CA265_RS10040 +0.4 1.1 hypothetical protein compare
CA265_RS12780 +0.4 0.8 hypothetical protein compare
CA265_RS09120 +0.4 2.7 hypothetical protein compare
CA265_RS04340 +0.4 2.1 hypothetical protein compare
CA265_RS20685 +0.4 1.3 hypothetical protein compare
CA265_RS10170 +0.4 1.4 hypothetical protein compare
CA265_RS15985 +0.4 2.8 mechanosensitive ion channel protein MscS compare
CA265_RS17995 +0.4 1.7 hypothetical protein compare
CA265_RS18530 +0.4 1.2 aspartate aminotransferase family protein compare
CA265_RS08070 +0.4 0.8 tRNA-Ser compare
CA265_RS08880 +0.4 2.6 chromate transporter compare
CA265_RS00165 +0.4 2.1 hypothetical protein compare
CA265_RS15085 +0.4 2.4 hypothetical protein compare
CA265_RS19380 +0.4 2.6 beta-carotene 15,15'-monooxygenase compare
CA265_RS14485 +0.4 2.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS16155 +0.4 1.8 tRNA pseudouridine(55) synthase TruB compare
CA265_RS02580 +0.4 2.1 hypothetical protein compare
CA265_RS10905 +0.4 1.4 iron-dependent repressor compare
CA265_RS10480 +0.4 1.3 hypothetical protein compare
CA265_RS08965 +0.4 1.5 thioesterase compare
CA265_RS03050 +0.4 2.2 hypothetical protein compare
CA265_RS14675 +0.4 1.7 hypothetical protein compare
CA265_RS04780 +0.4 1.2 polyketide cyclase compare
CA265_RS23800 +0.4 2.1 methyltransferase type 12 compare
CA265_RS21080 +0.4 1.3 hypothetical protein compare
CA265_RS21260 +0.4 2.8 hypothetical protein compare
CA265_RS20140 +0.4 1.9 hypothetical protein compare
CA265_RS05735 +0.4 1.4 hypothetical protein compare
CA265_RS03210 +0.4 1.9 hypothetical protein compare
CA265_RS12945 +0.4 2.5 hypothetical protein compare
CA265_RS23440 +0.4 3.0 methionine synthase compare
CA265_RS21250 +0.4 2.7 thioredoxin compare
CA265_RS21195 +0.3 2.6 hypothetical protein compare
CA265_RS07655 +0.3 1.9 hypothetical protein compare
CA265_RS15690 +0.3 1.7 NADPH-dependent FMN reductase compare
CA265_RS20380 +0.3 2.4 hemagglutinin compare
CA265_RS15870 +0.3 1.1 hypothetical protein compare
CA265_RS03140 +0.3 1.6 hypothetical protein compare
CA265_RS15530 +0.3 1.6 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA265_RS14345 +0.3 1.5 hypothetical protein compare
CA265_RS18400 +0.3 2.1 iron-sulfur cluster-binding protein compare
CA265_RS08020 +0.3 2.4 hypothetical protein compare
CA265_RS11760 +0.3 2.2 mobilization protein compare
CA265_RS01055 +0.3 1.3 hypothetical protein compare
CA265_RS20365 +0.3 0.9 hypothetical protein compare
CA265_RS13750 +0.3 2.3 hypothetical protein compare
CA265_RS24025 +0.3 1.8 hypothetical protein compare
CA265_RS02800 +0.3 1.9 hypothetical protein compare
CA265_RS13235 +0.3 1.8 hypothetical protein compare
CA265_RS12030 +0.3 2.3 hypothetical protein compare
CA265_RS17535 +0.3 2.2 deoxyribodipyrimidine photolyase compare
CA265_RS02105 +0.3 1.7 hypothetical protein compare
CA265_RS06560 +0.3 1.9 hypothetical protein compare
CA265_RS11605 +0.3 2.3 Proline dehydrogenase (EC 1.5.5.2) (from data) compare
CA265_RS15910 +0.3 2.7 hypothetical protein compare
CA265_RS25095 +0.3 2.1 MBL fold metallo-hydrolase compare
CA265_RS12765 +0.3 2.1 SRPBCC family protein compare
CA265_RS08935 +0.3 1.8 (2Fe-2S)-binding protein compare
CA265_RS25305 +0.3 1.2 hypothetical protein compare
CA265_RS15040 +0.3 1.7 cytidine deaminase compare
CA265_RS21765 +0.3 1.8 hypothetical protein compare
CA265_RS11770 +0.3 2.0 hypothetical protein compare
CA265_RS21030 +0.3 1.5 hypothetical protein compare
CA265_RS01320 +0.3 0.6 hypothetical protein compare
CA265_RS13225 +0.3 2.0 exonuclease compare
CA265_RS06005 +0.3 2.3 transposase compare
CA265_RS19495 +0.3 1.7 FkbM family methyltransferase compare
CA265_RS05840 +0.3 1.5 glyoxalase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Paraquat dichloride in Pedobacter sp. GW460-11-11-14-LB5

For stress Paraquat dichloride across organisms