Experiment set1IT010 for Burkholderia phytofirmans PsJN

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -8.1 -5.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17675 -7.3 -3.0 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17685 -7.0 -9.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33880 -7.0 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16270 -6.9 -6.4 phosphoglycerate kinase compare
BPHYT_RS17690 -6.9 -12.5 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -6.8 -9.4 ketol-acid reductoisomerase compare
BPHYT_RS14915 -6.7 -11.2 phosphoserine aminotransferase compare
BPHYT_RS17680 -6.7 -5.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03150 -6.6 -13.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14895 -6.4 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS09500 -6.4 -8.7 glucose-6-phosphate isomerase compare
BPHYT_RS18320 -6.4 -13.6 orotate phosphoribosyltransferase compare
BPHYT_RS33835 -6.2 -7.8 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33900 -6.2 -14.3 3-isopropylmalate dehydrogenase compare
BPHYT_RS17890 -6.1 -4.2 shikimate kinase compare
BPHYT_RS12985 -6.1 -4.2 amino acid acetyltransferase compare
BPHYT_RS08955 -6.1 -5.9 homoserine dehydrogenase compare
BPHYT_RS06545 -6.0 -12.0 acetolactate synthase compare
BPHYT_RS14845 -6.0 -4.1 cysteine synthase compare
BPHYT_RS33875 -6.0 -12.7 tryptophan synthase subunit alpha compare
BPHYT_RS17855 -5.8 -16.9 glutamate synthase compare
BPHYT_RS12055 -5.8 -20.0 phosphoenolpyruvate synthase compare
BPHYT_RS15920 -5.8 -12.1 argininosuccinate synthase compare
BPHYT_RS17395 -5.8 -3.3 anthranilate synthase subunit II compare
BPHYT_RS09515 -5.7 -5.6 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS15915 -5.7 -12.8 ornithine carbamoyltransferase compare
BPHYT_RS33645 -5.7 -6.7 homoserine kinase compare
BPHYT_RS10100 -5.6 -7.6 dihydroxy-acid dehydratase compare
BPHYT_RS13705 -5.6 -5.4 chorismate synthase compare
BPHYT_RS14190 -5.5 -11.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12530 -5.4 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16245 -5.4 -9.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14910 -5.4 -10.3 chorismate mutase compare
BPHYT_RS33865 -5.4 -9.8 tryptophan synthase alpha chain compare
BPHYT_RS17400 -5.3 -9.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS26970 -5.3 -10.7 L-lactate dehydrogenase, LldF subunit (from data) conserved
BPHYT_RS33915 -5.2 -7.5 isopropylmalate isomerase compare
BPHYT_RS05225 -5.2 -8.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17405 -5.1 -2.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS16905 -5.1 -9.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS16835 -5.1 -6.8 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS08960 -5.0 -3.4 threonine synthase compare
BPHYT_RS33840 -5.0 -9.2 amidophosphoribosyltransferase compare
BPHYT_RS03645 -5.0 -4.2 tRNA dimethylallyltransferase compare
BPHYT_RS02590 -5.0 -8.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06405 -4.8 -7.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS17390 -4.8 -11.6 anthranilate synthase subunit I compare
BPHYT_RS16255 -4.8 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06900 -4.7 -6.0 aspartate aminotransferase compare
BPHYT_RS17670 -4.6 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS08850 -4.5 -4.0 transcriptional regulator compare
BPHYT_RS01595 -4.5 -8.4 homoserine O-acetyltransferase compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS16840 -4.4 -3.0 transketolase compare
BPHYT_RS17715 -4.4 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33920 -4.3 -11.5 type II citrate synthase compare
BPHYT_RS26965 -4.2 -2.4 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS17885 -4.2 -6.0 3-dehydroquinate synthase compare
BPHYT_RS02570 -4.1 -8.7 phosphocarrier protein HPr compare
BPHYT_RS12845 -4.0 -18.0 ATPase compare
BPHYT_RS04955 -3.7 -3.9 methionyl-tRNA synthetase compare
BPHYT_RS06610 -3.6 -2.8 triosephosphate isomerase compare
BPHYT_RS03725 -3.3 -3.2 serine hydroxymethyltransferase compare
BPHYT_RS18340 -3.2 -2.5 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS17380 -3.2 -14.2 ribulose-phosphate 3-epimerase compare
BPHYT_RS13220 -3.2 -13.8 phosphomethylpyrimidine synthase compare
BPHYT_RS05960 -3.1 -9.1 endoribonuclease L-PSP compare
BPHYT_RS18705 -3.1 -3.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03535 -3.0 -5.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12840 -2.9 -5.1 pyruvate dehydrogenase compare
BPHYT_RS08565 -2.8 -2.7 dihydroorotate dehydrogenase compare
BPHYT_RS17700 -2.7 -2.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06175 -2.7 -7.8 LPS biosynthesis compare
BPHYT_RS14195 -2.7 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14855 -2.5 -1.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS15670 -2.3 -8.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS23840 -2.3 -3.5 methyltransferase compare
BPHYT_RS04725 -2.2 -9.8 sulfite reductase compare
BPHYT_RS03625 -2.1 -10.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS15620 -2.1 -5.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12465 -2.1 -4.4 inositol monophosphatase compare
BPHYT_RS35885 -2.0 -7.9 hypothetical protein compare
BPHYT_RS01590 -2.0 -5.5 methionine biosynthesis protein MetW compare
BPHYT_RS04965 -2.0 -7.2 ATP-binding protein compare
BPHYT_RS06685 -1.8 -2.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12060 -1.8 -2.9 hypothetical protein compare
BPHYT_RS36275 -1.8 -1.8 hypothetical protein compare
BPHYT_RS09145 -1.8 -5.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02905 -1.7 -13.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS15415 -1.7 -11.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS15075 -1.7 -3.4 dihydrokaempferol 4-reductase compare
BPHYT_RS17920 -1.7 -2.1 protein CyaY compare
BPHYT_RS26975 -1.7 -1.8 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS16975 -1.6 -7.3 shikimate 5-dehydrogenase compare
BPHYT_RS04385 -1.6 -4.2 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06045 -1.6 -9.0 transaldolase compare
BPHYT_RS03570 -1.6 -8.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS06410 -1.6 -2.1 transcriptional regulator compare
BPHYT_RS04820 -1.6 -6.9 LysR family transcriptional regulator compare
BPHYT_RS00115 -1.5 -2.5 acetaldehyde dehydrogenase compare
BPHYT_RS02650 -1.5 -1.9 membrane protein compare
BPHYT_RS08950 -1.5 -4.2 aminotransferase compare
BPHYT_RS04720 -1.5 -4.8 transcriptional regulator compare
BPHYT_RS17530 -1.5 -7.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25875 -1.5 -1.8 type III secretion protein compare
BPHYT_RS17945 -1.5 -2.5 cytochrome C biogenesis protein compare
BPHYT_RS04730 -1.4 -5.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS17520 -1.4 -5.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17445 -1.3 -5.3 GTP-binding protein YchF compare
BPHYT_RS30995 -1.3 -1.3 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS16470 -1.3 -5.1 DeoR faimly transcriptional regulator compare
BPHYT_RS08235 -1.3 -1.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS25800 -1.3 -2.3 sugar ABC transporter permease compare
BPHYT_RS33905 -1.3 -0.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS33580 -1.3 -4.9 geranyltranstransferase compare
BPHYT_RS16250 -1.3 -1.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS15890 -1.3 -1.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS04745 -1.2 -6.3 sulfate adenylyltransferase compare
BPHYT_RS06350 -1.2 -1.7 chemotaxis protein CheY compare
BPHYT_RS17525 -1.2 -2.3 glutaredoxin compare
BPHYT_RS18760 -1.2 -3.0 flagellar biosynthesis protein FliT compare
BPHYT_RS14400 -1.2 -3.7 anti-sigma factor compare
BPHYT_RS23230 -1.2 -0.8 histidine kinase compare
BPHYT_RS04920 -1.1 -1.6 aspartate 1-decarboxylase compare
BPHYT_RS10095 -1.1 -2.1 integrase compare
BPHYT_RS06375 -1.1 -5.4 ribonuclease compare
BPHYT_RS02595 -1.1 -1.8 sulfurtransferase compare
BPHYT_RS14660 -1.1 -1.6 hypothetical protein compare
BPHYT_RS07690 -1.1 -2.4 AraC family transcriptional regulator compare
BPHYT_RS02575 -1.1 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS14370 -1.1 -1.8 ribonuclease III compare
BPHYT_RS33965 -1.1 -2.3 methylcitrate synthase compare
BPHYT_RS25335 -1.1 -1.2 hypothetical protein compare
BPHYT_RS15615 -1.0 -3.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS23570 -1.0 -4.9 chemotaxis protein CheY compare
BPHYT_RS04370 -1.0 -2.1 glycosyl transferase compare
BPHYT_RS08525 -1.0 -1.5 SAM-dependent methyltransferase compare
BPHYT_RS00380 -1.0 -2.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02285 -1.0 -4.6 cell division protein compare
BPHYT_RS02865 -1.0 -2.7 hypothetical protein compare
BPHYT_RS16990 -1.0 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS07220 -1.0 -1.9 GCN5 family acetyltransferase compare
BPHYT_RS02690 -1.0 -6.0 protoheme IX farnesyltransferase compare
BPHYT_RS11400 -1.0 -2.2 hypothetical protein compare
BPHYT_RS02640 -1.0 -7.3 cytochrome C oxidase compare
BPHYT_RS33535 -1.0 -7.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS20790 -1.0 -2.0 TetR family transcriptional regulator compare
BPHYT_RS04740 -1.0 -4.9 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS17265 -1.0 -1.6 cell division protein compare
BPHYT_RS33060 -1.0 -1.9 hypothetical protein compare
BPHYT_RS02685 -0.9 -4.9 cytochrome C oxidase subunit I compare
BPHYT_RS16345 -0.9 -4.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS14865 -0.9 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14920 -0.9 -1.3 hypothetical protein compare
BPHYT_RS08790 -0.9 -3.8 ABC transporter permease compare
BPHYT_RS03495 -0.9 -2.7 hypothetical protein compare
BPHYT_RS14900 -0.9 -2.2 prephenate dehydrogenase compare
BPHYT_RS25500 -0.9 -1.3 hypothetical protein compare
BPHYT_RS27175 -0.9 -1.0 DNA-binding protein compare
BPHYT_RS06920 -0.9 -3.8 iron permease FTR1 compare
BPHYT_RS09905 -0.9 -1.6 hypothetical protein compare
BPHYT_RS28705 -0.9 -1.4 IclR family transcriptional regulator compare
BPHYT_RS12990 -0.9 -2.7 iron transporter compare
BPHYT_RS16435 -0.9 -6.6 alcohol dehydrogenase compare
BPHYT_RS29720 -0.8 -1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS16065 -0.8 -1.0 LacI family transcriptional regulator compare
BPHYT_RS01530 -0.8 -1.6 penicillin-binding protein 2 compare
BPHYT_RS12940 -0.8 -5.6 signal transduction histidine kinase compare
BPHYT_RS06070 -0.8 -5.0 cytochrome C compare
BPHYT_RS33150 -0.8 -1.0 beta-lactamase compare
BPHYT_RS04285 -0.8 -1.9 rhamnosyltransferase compare
BPHYT_RS04010 -0.8 -1.2 glycosyl transferase compare
BPHYT_RS32260 -0.8 -1.4 hypothetical protein compare
BPHYT_RS01660 -0.8 -2.5 hypothetical protein compare
BPHYT_RS06065 -0.8 -5.3 cytochrome C compare
BPHYT_RS02665 -0.8 -5.5 MFS transporter compare
BPHYT_RS13605 -0.8 -0.9 tRNA-Pro compare
BPHYT_RS07570 -0.8 -1.3 hypothetical protein compare
BPHYT_RS23395 -0.8 -1.7 glycosyl transferase compare
BPHYT_RS33655 -0.8 -2.8 MarR family transcriptional regulator compare
BPHYT_RS29320 -0.8 -2.0 histidine kinase compare
BPHYT_RS20805 -0.8 -2.4 LacI family transcriptional regulator compare
BPHYT_RS31910 -0.8 -1.8 hypothetical protein compare
BPHYT_RS13315 -0.8 -2.3 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS15710 -0.8 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS17760 -0.8 -3.9 ABC transporter permease compare
BPHYT_RS12935 -0.7 -3.7 chemotaxis protein CheY compare
BPHYT_RS16430 -0.7 -5.9 cytochrome C compare
BPHYT_RS25870 -0.7 -0.9 type III secretion system ATPase compare
BPHYT_RS22360 -0.7 -1.8 response regulator receiver compare
BPHYT_RS05880 -0.7 -1.5 hypothetical protein compare
BPHYT_RS02525 -0.7 -3.8 membrane protein compare
BPHYT_RS04290 -0.7 -1.2 glycosyl transferase family 2 compare
BPHYT_RS27005 -0.7 -1.9 RNA polymerase sigma54 factor compare
BPHYT_RS13655 -0.7 -5.5 GTP pyrophosphokinase compare
BPHYT_RS26820 -0.7 -1.3 LysR family transcriptional regulator compare
BPHYT_RS17095 -0.7 -2.3 proline--tRNA ligase compare
BPHYT_RS32395 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium L-Lactate in Burkholderia phytofirmans PsJN

For carbon source Sodium L-Lactate across organisms