Experiment set1IT009 for Sinorhizobium meliloti 1021

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -10.4 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc02767 -8.8 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02899 -8.5 -8.3 prephenate dehydratase compare
SMc00235 -8.3 -5.7 anthranilate phosphoribosyltransferase compare
SMc00236 -8.2 -5.7 Indole-3-glycerol phosphate synthase compare
SMc02766 -8.2 -12.5 tryptophan synthase subunit beta compare
SMc04405 -8.1 -7.9 3-isopropylmalate dehydrogenase compare
SMc00917 -8.0 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00711 -8.0 -5.5 cyclohexadienyl dehydrogenase compare
SMc02569 -7.9 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc01801 -7.9 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01843 -7.8 -10.7 5,10-methylenetetrahydrofolate reductase compare
SMc04045 -7.7 -5.3 dihydroxy-acid dehydratase compare
SMc02717 -7.6 -9.0 2-isopropylmalate synthase compare
SMc01431 -7.4 -8.9 acetolactate synthase 3 catalytic subunit compare
SMc03823 -7.4 -13.3 isopropylmalate isomerase large subunit compare
SMc01494 -7.4 -13.3 phosphoserine phosphatase compare
SMc02217 -7.3 -5.1 O-succinylhomoserine sulfhydrylase compare
SMc02725 -7.3 -12.2 anthranilate synthase compare
SMc00918 -7.2 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc03797 -7.1 -10.9 homoserine O-succinyltransferase compare
SMc00554 -7.0 -4.9 amidophosphoribosyltransferase compare
SMc04028 -7.0 -15.0 glutamate synthase compare
SM_b21176 -6.8 -4.7 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc01726 -6.8 -8.1 acetylglutamate kinase compare
SMc00993 -6.8 -10.4 phosphoribosylamine--glycine ligase compare
SMc00488 -6.8 -18.7 phosphoribosylformylglycinamidine synthase II compare
SMc00640 -6.7 -11.2 phosphoserine aminotransferase compare
SMa1635 -6.7 -2.6 hypothetical protein compare
SMc00412 -6.6 -4.6 orotidine 5'-phosphate decarboxylase compare
SMc03112 -6.5 -18.9 B12-dependent methionine synthase compare
SMc04002 -6.5 -7.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SM_b21643 -6.5 -15.2 alpha-galactosidase (melibiase) protein conserved
SMc00495 -6.5 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02137 -6.5 -6.3 ornithine carbamoyltransferase compare
SMc02765 -6.5 -10.7 tryptophan synthase subunit alpha compare
SMc02245 -6.5 -7.5 dihydroorotate dehydrogenase 2 compare
SMc04026 -6.4 -10.8 glutamate synthase compare
SMc00131 -6.4 -14.1 transcriptional regulator compare
SMc02123 -6.2 -4.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02570 -6.1 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03895 -6.1 -19.6 pyruvate carboxylase compare
SMc00615 -6.1 -6.1 phosphoribosylaminoimidazole synthetase compare
SMc00614 -6.1 -8.8 phosphoribosylglycinamide formyltransferase compare
SMc02165 -6.0 -9.1 orotate phosphoribosyltransferase compare
SMc01004 -5.9 -8.3 phosphoribosyl-AMP cyclohydrolase compare
SMc01881 -5.9 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02124 -5.9 -14.6 nitrite reductase compare
SMc02166 -5.8 -12.8 dihydroorotase compare
SMc01360 -5.8 -5.6 aspartate carbamoyltransferase catalytic subunit compare
SMc03229 -5.6 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -5.6 -3.7 inosine 5'-monophosphate dehydrogenase compare
SMc01361 -5.6 -6.0 dihydroorotase compare
SMc03070 -5.5 -10.6 glucose-6-phosphate 1-dehydrogenase compare
SMc00090 -5.5 -12.8 sulfate adenylyltransferase compare
SMc00293 -5.4 -11.1 homoserine dehydrogenase compare
SMc00092 -5.3 -14.0 phosphoadenosine phosphosulfate reductase compare
SMc00494 -5.2 -2.8 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc03763 -5.1 -3.5 cytosine-specific methyltransferase compare
SMc02307 -5.1 -10.0 histidinol dehydrogenase compare
SMc03776 -5.0 -4.9 gamma-glutamyl kinase compare
SMc01215 -5.0 -3.5 carbamoyl phosphate synthase large subunit compare
SMc04088 -5.0 -9.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03777 -5.0 -8.4 gamma-glutamyl phosphate reductase compare
SMc03826 -5.0 -4.9 argininosuccinate synthase compare
SMc00493 -4.9 -6.2 phosphoribosylformylglycinamidine synthase I compare
SM_b21175 -4.9 -7.5 phosphate uptake ABC transporter permease compare
SMc01569 -4.9 -2.5 carbamoyl phosphate synthase small subunit compare
SMc02755 -4.9 -8.1 S-adenosyl-L-homocysteine hydrolase compare
SMc00091 -4.8 -14.0 sulfate adenylyltransferase compare
SMc01053 -4.6 -5.7 siroheme synthase compare
SMc04001 -4.6 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01770 -4.6 -2.1 serine hydroxymethyltransferase compare
SMc01880 -4.6 -4.4 pantoate--beta-alanine ligase compare
SMc00017 -4.4 -2.3 homoserine kinase compare
SMc02246 -4.3 -1.6 hypothetical protein compare
SMc01054 -4.3 -6.0 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc03795 -4.3 -2.3 isopropylmalate isomerase small subunit compare
SMc03979 -4.3 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00882 -4.3 -7.0 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMc02707 -4.1 -7.6 hypothetical protein compare
SMc03978 -4.1 -4.8 transketolase compare
SM_b21174 -4.0 -7.5 phosphate uptake ABC transporter permease compare
SMc04346 -3.9 -5.0 ketol-acid reductoisomerase compare
SMc00302 -3.8 -3.5 hypothetical protein compare
SMc00876 -3.8 -6.5 ATP-binding MRP protein compare
SM_b21177 -3.8 -8.3 phosphate uptake ABC transporter ATP-binding protein compare
SMc00641 -3.8 -5.3 D-3-phosphoglycerate dehydrogenase compare
SM_b21645 -3.7 -10.8 ABC transporter for D-Raffinose, permease component 1 (from data) conserved
SMc02574 -3.7 -5.8 imidazoleglycerol-phosphate dehydratase compare
SMc00294 -3.7 -11.2 aminotransferase compare
SMc02138 -3.6 -6.3 acetylornithine transaminase compare
SM_b21646 -3.5 -14.1 ABC transporter for D-Raffinose, permease component 2 (from data) conserved
SMc00963 -3.5 -7.1 hypothetical protein compare
SM_b21648 -3.4 -10.2 Alpha-galactosidase (EC 3.2.1.22) (from data) conserved
SM_b21647 -3.4 -16.6 ABC transporter for D-Raffinose, periplasmic substrate-binding protein (from data) conserved
SMc01430 -3.4 -5.9 acetolactate synthase 3 regulatory subunit compare
SM_b21644 -3.4 -13.2 ABC transporter for D-Raffinose, ATPase component (from data) conserved
SMc00414 -3.2 -12.8 hypothetical protein compare
SM_b21649 -3.2 -13.9 AraC family transcriptional regulator conserved
SMc01124 -2.9 -7.9 PII uridylyl-transferase compare
SMc00295 -2.9 -2.1 hypothetical protein compare
SMc00982 -2.7 -7.5 dioxygenase compare
SMc02833 -2.5 -3.3 penicillin-insensitive murein endopeptidase compare
SMc03981 -2.5 -4.1 phosphoglycerate kinase compare
SMc01206 -2.4 -3.4 queuine tRNA-ribosyltransferase compare
SMc01441 -2.4 -6.3 membrane bound protease compare
SMc01147 -2.4 -4.8 coproporphyrinogen III oxidase compare
SMc04005 -2.3 -9.4 pyruvate kinase compare
SMc01440 -2.3 -8.1 hydrolase serine protease transmembrane protein compare
SMc02640 -2.3 -6.5 UDP-glucuronic acid epimerase compare
SMc02983 -2.2 -7.9 ornithine, DAP, or arginine decarboxylase compare
SMc02058 -2.2 -4.0 YAJC protein compare
SMc02425 -2.2 -3.7 transcriptional regulator compare
SM_b20329 -2.0 -7.8 required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data) compare
SMc02164 -2.0 -3.9 fructokinase compare
SM_b20330 -2.0 -5.5 glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data) compare
SMc03068 -1.9 -8.3 phosphogluconate dehydratase compare
SMc02683 -1.9 -2.8 hypothetical protein compare
SMc01578 -1.9 -11.1 aspartate aminotransferase compare
SMc04000 -1.9 -1.6 hypothetical protein compare
SMc00838 -1.8 -5.6 hypothetical protein compare
SMc00088 -1.7 -2.1 hypothetical protein compare
SMc03069 -1.7 -2.1 6-phosphogluconolactonase compare
SMc00334 -1.6 -2.5 cytidylate kinase compare
SMc00709 -1.6 -4.2 hypothetical protein compare
SM_b20307 -1.5 -1.2 dihydroxyacetone kinase compare
SMc00296 -1.5 -9.7 POLY3-hydroxybutyrate polymerase compare
SMc00451 -1.5 -6.7 processing protease compare
SMa0211 -1.5 -1.7 hypothetical protein compare
SMc02084 -1.5 -1.6 biopolymer transport transmembrane protein compare
SMc01028 -1.4 -8.9 phosphopyruvate hydratase compare
SMc02112 -1.4 -7.0 hypothetical protein compare
SMc01501 -1.4 -3.7 mannitol 2-dehydrogenase compare
SMc01842 -1.4 -1.5 methyltransferase transcription regulator protein compare
SMc00619 -1.4 -2.3 hypothetical protein compare
SM_b20994 -1.3 -3.9 hypothetical protein compare
SMc00981 -1.2 -6.0 ferredoxin protein compare
SMc00067 -1.2 -6.4 outer-membranne lipoprotein compare
SMc01207 -1.2 -2.3 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02451 -1.2 -2.1 hypothetical protein compare
SMc00166 -1.2 -2.1 oxidoreductase NAD protein compare
SMc03839 -1.1 -1.7 hypothetical protein compare
SMc01939 -1.1 -1.4 urease subunit beta compare
SMc03100 -1.1 -1.0 hypothetical protein compare
SMc04121 -1.1 -2.0 uracil phosphoribosyltransferase compare
SMc02858 -1.1 -0.8 chaperone protein DnaJ compare
SMc01852 -1.1 -6.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc02659 -1.1 -5.5 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc04454 -1.1 -4.3 ABC transporter ATP-binding protein compare
SMc02753 -1.0 -1.5 PTS system transporter subunit IIA compare
SMc03924 -1.0 -5.6 glycogen synthase compare
SMc03993 -1.0 -2.6 hypothetical protein compare
SMc02478 -1.0 -4.4 hypothetical protein compare
SMc01769 -1.0 -7.5 hypothetical protein compare
SMc01368 -1.0 -3.0 transport transmembrane protein compare
SM_b20955 -1.0 -3.3 endo-beta-1,3-1,4-glycanase compare
SMc04296 -0.9 -1.3 cell division protein FtsZ compare
SMc02102 -0.9 -2.6 hypothetical protein compare
SMc02641 -0.9 -3.1 UDP-glucose 6-dehydrogenase compare
SMc01183 -0.9 -1.2 LexA repressor compare
SMc00579 -0.9 -2.4 dimethyladenosine transferase compare
SMc02724 -0.9 -2.2 hypothetical protein compare
SM_b21131 -0.9 -4.5 sulfate ABC transporter permease compare
SMc02435 -0.9 -2.4 methyltransferase compare
SM_b20810 -0.9 -7.4 membrane-located cell surface saccharide acetylase compare
SMc03746 -0.9 -1.1 hypothetical protein compare
SMc03153 -0.9 -2.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc02909 -0.9 -1.0 transglycosylase transmembrane protein compare
SM_b21524 -0.9 -2.3 septum formation inhibitor compare
SMc04348 -0.8 -0.9 transcriptional regulator compare
SMc03061 -0.8 -6.4 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data) compare
SMc03980 -0.8 -3.6 hypothetical protein compare
SM_b20655 -0.8 -2.0 hypothetical protein compare
SM_b21173 -0.8 -1.9 hypothetical protein compare
SMa2020 -0.8 -4.6 Transcriptional regulator compare
SMc02172 -0.8 -3.9 transcriptional regulator compare
SMc01043 -0.8 -4.0 nitrogen assimilation regulatory protein compare
SMc00914 -0.8 -2.8 oxidoreductase compare
SMc03063 -0.8 -6.1 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data) compare
SMc01857 -0.8 -2.9 cell division protein MraZ compare
SM_b20823 -0.8 -4.0 cell surface saccharide synthesis protein compare
SM_b21679 -0.8 -0.8 hypothetical protein compare
SMc03184 -0.8 -1.1 PH adaptation potassium efflux system G transmembrane protein compare
SM_b21261 -0.8 -6.2 mureinpeptideoligopeptide ABC transporter substrate-binding protein precursor compare
SMa0789 -0.8 -1.9 GntR family transcriptional regulator compare
SMc02582 -0.8 -2.5 hypothetical protein compare
SMc02856 -0.8 -5.5 penicillin-binding protein compare
SMa0112 -0.8 -2.9 hypothetical protein compare
SMc02046 -0.8 -1.5 hypothetical protein compare
SMc02543 -0.8 -3.2 hypothetical protein compare
SM_b20217 -0.7 -3.6 hypothetical protein compare
SMc02234 -0.7 -1.9 hypothetical protein compare
SMc01222 -0.7 -3.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00726 -0.7 -0.7 thiol:disulfide interchange redox-active center transmembrane protein compare
SM_b20258 -0.7 -2.5 transcriptional regulator compare
SMc03065 -0.7 -4.0 ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) (from data) compare
SMc00974 -0.7 -1.4 RNA methyltransferase compare
SM_b21132 -0.7 -2.2 sulfate ABC transporter permease compare
SMc00356 -0.7 -2.9 lysyl-tRNA synthetase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Raffinose pentahydrate in Sinorhizobium meliloti 1021

For carbon source D-Raffinose pentahydrate across organisms