Experiment set1IT009 for Burkholderia phytofirmans PsJN

Compare to:

Sodium D-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -8.1 -5.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS09500 -7.7 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS16245 -7.6 -5.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16835 -7.2 -7.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33865 -7.1 -8.5 tryptophan synthase alpha chain compare
BPHYT_RS16270 -6.9 -6.1 phosphoglycerate kinase compare
BPHYT_RS06545 -6.7 -12.0 acetolactate synthase compare
BPHYT_RS10100 -6.7 -6.5 dihydroxy-acid dehydratase compare
BPHYT_RS17690 -6.7 -13.6 imidazole glycerol phosphate synthase compare
BPHYT_RS15920 -6.6 -11.1 argininosuccinate synthase compare
BPHYT_RS33880 -6.5 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17685 -6.5 -10.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14895 -6.5 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS09515 -6.4 -4.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08955 -6.4 -4.4 homoserine dehydrogenase compare
BPHYT_RS33835 -6.4 -9.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16905 -6.3 -6.2 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14190 -6.3 -8.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS18320 -6.3 -9.9 orotate phosphoribosyltransferase compare
BPHYT_RS13705 -6.2 -4.3 chorismate synthase compare
BPHYT_RS17890 -6.1 -3.9 shikimate kinase compare
BPHYT_RS12985 -6.1 -4.2 amino acid acetyltransferase compare
BPHYT_RS33875 -6.1 -9.5 tryptophan synthase subunit alpha compare
BPHYT_RS15915 -6.0 -10.8 ornithine carbamoyltransferase compare
BPHYT_RS33900 -6.0 -13.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS12055 -5.9 -16.2 phosphoenolpyruvate synthase compare
BPHYT_RS14855 -5.9 -3.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02590 -5.9 -9.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06555 -5.9 -11.2 ketol-acid reductoisomerase compare
BPHYT_RS33840 -5.8 -9.8 amidophosphoribosyltransferase compare
BPHYT_RS14910 -5.7 -12.9 chorismate mutase compare
BPHYT_RS17855 -5.7 -20.1 glutamate synthase compare
BPHYT_RS17400 -5.7 -7.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS17680 -5.5 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14915 -5.4 -9.6 phosphoserine aminotransferase compare
BPHYT_RS17670 -5.3 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS06610 -5.3 -2.7 triosephosphate isomerase compare
BPHYT_RS17405 -5.2 -1.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS33915 -5.2 -7.9 isopropylmalate isomerase compare
BPHYT_RS06900 -5.1 -9.8 aspartate aminotransferase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS08960 -5.0 -3.2 threonine synthase compare
BPHYT_RS16255 -5.0 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS03150 -4.9 -10.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33645 -4.9 -8.3 homoserine kinase compare
BPHYT_RS17390 -4.8 -13.5 anthranilate synthase subunit I compare
BPHYT_RS17715 -4.8 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS01595 -4.8 -7.9 homoserine O-acetyltransferase compare
BPHYT_RS05225 -4.6 -7.0 phosphoenolpyruvate carboxylase compare
BPHYT_RS03535 -4.5 -8.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS12530 -4.4 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS06405 -4.3 -5.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS04955 -4.3 -3.5 methionyl-tRNA synthetase compare
BPHYT_RS14845 -4.2 -4.2 cysteine synthase compare
BPHYT_RS05960 -4.2 -7.1 endoribonuclease L-PSP compare
BPHYT_RS17885 -4.1 -6.1 3-dehydroquinate synthase compare
BPHYT_RS12845 -4.0 -16.3 ATPase compare
BPHYT_RS17395 -4.0 -3.6 anthranilate synthase subunit II compare
BPHYT_RS16840 -4.0 -3.9 transketolase compare
BPHYT_RS17675 -3.9 -3.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS08850 -3.8 -3.4 transcriptional regulator compare
BPHYT_RS08565 -3.7 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS33920 -3.6 -9.0 type II citrate synthase compare
BPHYT_RS13220 -3.4 -8.5 phosphomethylpyrimidine synthase compare
BPHYT_RS16675 -3.2 -3.6 dihydroorotase compare
BPHYT_RS33905 -3.0 -1.5 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS01590 -3.0 -11.5 methionine biosynthesis protein MetW compare
BPHYT_RS18910 -2.9 -2.2 FlgN compare
BPHYT_RS17700 -2.9 -2.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17380 -2.8 -9.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS12840 -2.7 -3.9 pyruvate dehydrogenase compare
BPHYT_RS33150 -2.5 -1.7 beta-lactamase compare
BPHYT_RS14195 -2.4 -3.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS06045 -2.4 -8.8 transaldolase compare
BPHYT_RS12465 -2.4 -4.2 inositol monophosphatase compare
BPHYT_RS18705 -2.4 -2.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15620 -2.4 -5.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06175 -2.4 -7.0 LPS biosynthesis compare
BPHYT_RS15075 -2.3 -2.5 dihydrokaempferol 4-reductase compare
BPHYT_RS04725 -2.3 -8.9 sulfite reductase compare
BPHYT_RS03625 -2.2 -11.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS09145 -2.2 -7.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02905 -2.0 -15.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS04385 -2.0 -3.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS03725 -1.9 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS12060 -1.8 -2.7 hypothetical protein compare
BPHYT_RS04370 -1.8 -2.7 glycosyl transferase compare
BPHYT_RS06990 -1.8 -2.1 membrane protein compare
BPHYT_RS17520 -1.8 -4.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS23840 -1.7 -4.0 methyltransferase compare
BPHYT_RS16975 -1.7 -6.6 shikimate 5-dehydrogenase compare
BPHYT_RS04965 -1.7 -6.3 ATP-binding protein compare
BPHYT_RS15670 -1.7 -8.7 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS35885 -1.5 -5.6 hypothetical protein compare
BPHYT_RS08950 -1.5 -4.1 aminotransferase compare
BPHYT_RS18340 -1.5 -2.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS02570 -1.5 -3.3 phosphocarrier protein HPr compare
BPHYT_RS36275 -1.5 -1.9 hypothetical protein compare
BPHYT_RS01485 -1.5 -1.4 histidine kinase compare
BPHYT_RS04290 -1.5 -1.9 glycosyl transferase family 2 compare
BPHYT_RS15415 -1.4 -10.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS04720 -1.4 -4.4 transcriptional regulator compare
BPHYT_RS10205 -1.4 -3.9 D-lactate dehydrogenase compare
BPHYT_RS04820 -1.4 -5.8 LysR family transcriptional regulator compare
BPHYT_RS06530 -1.4 -2.2 membrane protein compare
BPHYT_RS31400 -1.4 -1.6 methyl-accepting chemotaxis protein compare
BPHYT_RS03495 -1.3 -5.3 hypothetical protein compare
BPHYT_RS03900 -1.3 -1.2 phospholipid-binding protein compare
BPHYT_RS02690 -1.3 -8.3 protoheme IX farnesyltransferase compare
BPHYT_RS08125 -1.3 -7.8 ATPase compare
BPHYT_RS12990 -1.3 -2.5 iron transporter compare
BPHYT_RS33580 -1.3 -3.2 geranyltranstransferase compare
BPHYT_RS17530 -1.3 -4.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18765 -1.3 -5.4 flagellar biosynthesis protein FliS compare
BPHYT_RS16340 -1.3 -5.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS01955 -1.3 -4.7 hypothetical protein compare
BPHYT_RS09155 -1.3 -6.8 3-ketoacyl-ACP reductase compare
BPHYT_RS04920 -1.3 -2.4 aspartate 1-decarboxylase compare
BPHYT_RS14865 -1.3 -3.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS23455 -1.3 -1.4 phosphorylase compare
BPHYT_RS01455 -1.2 -1.1 peptide deformylase compare
BPHYT_RS17945 -1.2 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS03570 -1.2 -6.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS24975 -1.2 -2.0 RNA polymerase sigma24 factor compare
BPHYT_RS08245 -1.2 -3.8 anti-sigma factor compare
BPHYT_RS16345 -1.2 -4.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS00325 -1.2 -2.3 hypothetical protein compare
BPHYT_RS11810 -1.2 -1.8 LysR family transcriptional regulator compare
BPHYT_RS12940 -1.2 -4.4 signal transduction histidine kinase compare
BPHYT_RS04730 -1.2 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS06065 -1.2 -5.8 cytochrome C compare
BPHYT_RS18760 -1.1 -2.3 flagellar biosynthesis protein FliT compare
BPHYT_RS12150 -1.1 -8.2 PII uridylyl-transferase compare
BPHYT_RS10470 -1.1 -1.9 hypothetical protein compare
BPHYT_RS16130 -1.1 -6.8 cation ABC transporter substrate-binding protein compare
BPHYT_RS14900 -1.1 -2.4 prephenate dehydrogenase compare
BPHYT_RS12935 -1.1 -4.7 chemotaxis protein CheY compare
BPHYT_RS08665 -1.1 -1.3 hypothetical protein compare
BPHYT_RS12615 -1.1 -1.6 dihydrodipicolinate synthase compare
BPHYT_RS00380 -1.1 -2.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS36220 -1.1 -1.3 hypothetical protein compare
BPHYT_RS02525 -1.0 -5.1 membrane protein compare
BPHYT_RS24965 -1.0 -1.6 hypothetical protein compare
BPHYT_RS17095 -1.0 -3.1 proline--tRNA ligase compare
BPHYT_RS14060 -1.0 -2.1 peptidase M23 compare
BPHYT_RS29620 -1.0 -0.9 hypothetical protein compare
BPHYT_RS26775 -1.0 -1.7 chemotaxis protein CheB compare
BPHYT_RS22245 -1.0 -6.7 transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) conserved
BPHYT_RS15615 -1.0 -3.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS06685 -1.0 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06070 -1.0 -5.1 cytochrome C compare
BPHYT_RS25780 -1.0 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS03645 -1.0 -1.5 tRNA dimethylallyltransferase compare
BPHYT_RS13390 -1.0 -1.1 IclR family transcriptional regulator compare
BPHYT_RS02965 -1.0 -2.8 membrane protein compare
BPHYT_RS35625 -1.0 -3.2 ser/threonine protein phosphatase compare
BPHYT_RS22230 -1.0 -3.4 LuxR family transcriptional regulator compare
BPHYT_RS12265 -1.0 -1.6 alanine acetyltransferase compare
BPHYT_RS02650 -1.0 -1.3 membrane protein compare
BPHYT_RS35650 -1.0 -2.2 DSBA oxidoreductase compare
BPHYT_RS06190 -1.0 -2.3 heptosyltransferase compare
BPHYT_RS10465 -1.0 -2.1 hypothetical protein compare
BPHYT_RS35615 -0.9 -2.6 hypothetical protein compare
BPHYT_RS24500 -0.9 -1.7 histidine kinase compare
BPHYT_RS29245 -0.9 -2.5 peptidase M23 compare
BPHYT_RS10005 -0.9 -1.7 hypothetical protein compare
BPHYT_RS16135 -0.9 -5.1 ABC transporter ATP-binding protein compare
BPHYT_RS11705 -0.9 -1.3 hypothetical protein compare
BPHYT_RS17265 -0.9 -1.4 cell division protein compare
BPHYT_RS23445 -0.9 -1.9 hexuronate transporter compare
BPHYT_RS19785 -0.9 -1.7 chemotaxis protein CheY compare
BPHYT_RS24925 -0.9 -1.4 cytochrome O ubiquinol oxidase compare
BPHYT_RS33965 -0.9 -1.6 methylcitrate synthase compare
BPHYT_RS04740 -0.9 -4.4 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS26930 -0.9 -4.8 mechanosensitive ion channel protein compare
BPHYT_RS31755 -0.9 -1.8 amino acid ABC transporter ATPase compare
BPHYT_RS02640 -0.9 -6.6 cytochrome C oxidase compare
BPHYT_RS22455 -0.9 -1.1 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS02285 -0.9 -4.2 cell division protein compare
BPHYT_RS20070 -0.9 -1.6 hypothetical protein compare
BPHYT_RS32845 -0.9 -2.7 ABC transporter substrate-binding protein compare
BPHYT_RS20185 -0.9 -1.5 sugar transferase compare
BPHYT_RS02595 -0.9 -1.4 sulfurtransferase compare
BPHYT_RS06075 -0.9 -3.2 hypothetical protein compare
BPHYT_RS04745 -0.9 -3.1 sulfate adenylyltransferase compare
BPHYT_RS26025 -0.9 -0.9 hypothetical protein compare
BPHYT_RS08030 -0.9 -4.2 transposase compare
BPHYT_RS32395 -0.9 -1.2 hypothetical protein compare
BPHYT_RS13645 -0.9 -6.9 threonine--tRNA ligase compare
BPHYT_RS22910 -0.9 -1.2 hypothetical protein compare
BPHYT_RS05290 -0.9 -1.0 hypothetical protein compare
BPHYT_RS02975 -0.9 -1.8 membrane protein compare
BPHYT_RS08060 -0.9 -3.5 ribosome maturation factor RimP compare
BPHYT_RS09860 -0.8 -1.0 pilus assembly protein PilP compare
BPHYT_RS08185 -0.8 -3.4 pilus assembly protein CpaF compare
BPHYT_RS02865 -0.8 -1.6 hypothetical protein compare
BPHYT_RS16435 -0.8 -6.4 alcohol dehydrogenase compare
BPHYT_RS02825 -0.8 -1.6 ferredoxin compare
BPHYT_RS26490 -0.8 -1.1 hypothetical protein compare
BPHYT_RS35205 -0.8 -1.8 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium D-Lactate in Burkholderia phytofirmans PsJN

For carbon source Sodium D-Lactate across organisms