Experiment set1IT008 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_77 -6.2 -4.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -6.1 -9.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -5.9 -9.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3630 -5.7 -6.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3751 -5.5 -13.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4279 -5.4 -12.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5175 -5.4 -14.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_2258 -5.4 -8.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4564 -5.3 -11.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5177 -5.2 -12.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_4278 -5.2 -12.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_71 -5.1 -6.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3752 -5.0 -21.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_5176 -4.9 -10.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5150 -4.8 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3782 -4.8 -5.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3253 -4.7 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3610 -4.6 -6.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_64 -4.6 -3.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4048 -4.6 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4826 -4.3 -8.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_2863 -4.3 -8.7 Gluconate permease compare
Pf6N2E2_3842 -4.3 -5.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2885 -4.2 -7.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3839 -4.2 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4047 -4.1 -6.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3841 -4.0 -6.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3783 -4.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4276 -4.0 -6.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2073 -3.9 -7.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4825 -3.8 -10.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4759 -3.8 -16.5 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_302 -3.8 -8.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_3346 -3.7 -6.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_2753 -3.7 -4.4 HtrA protease/chaperone protein compare
Pf6N2E2_5553 -3.7 -8.2 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_5006 -3.7 -10.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5156 -3.6 -3.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_66 -3.6 -7.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5155 -3.4 -3.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4277 -3.4 -10.5 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_5316 -3.3 -3.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3252 -3.3 -6.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_2899 -3.2 -5.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3932 -3.2 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_50 -3.1 -7.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4638 -3.1 -4.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3940 -3.1 -8.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3170 -3.0 -8.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_4369 -3.0 -2.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2074 -2.9 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2465 -2.9 -6.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5579 -2.9 -7.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_3248 -2.7 -3.3 Probable transmembrane protein compare
Pf6N2E2_3661 -2.6 -5.7 hypothetical protein compare
Pf6N2E2_63 -2.5 -4.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4764 -2.5 -4.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4761 -2.3 -7.9 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4762 -2.3 -3.2 Biotin synthesis protein BioH compare
Pf6N2E2_4763 -2.2 -9.2 Biotin synthesis protein BioC compare
Pf6N2E2_5967 -2.2 -4.1 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_4631 -2.2 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4454 -2.1 -5.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_5728 -2.1 -3.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5520 -2.1 -6.7 Sensory box histidine kinase compare
Pf6N2E2_5536 -2.1 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3349 -2.1 -3.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4206 -2.0 -2.1 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2827 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_5571 -1.9 -2.3 hypothetical protein compare
Pf6N2E2_5527 -1.9 -2.9 Cold shock protein CspC compare
Pf6N2E2_4987 -1.9 -1.6 MaoC-like domain protein compare
Pf6N2E2_3251 -1.8 -7.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3461 -1.8 -2.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2758 -1.8 -9.9 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_5494 -1.8 -4.6 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4579 -1.8 -2.4 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4009 -1.8 -8.3 GGDEF domain protein compare
Pf6N2E2_4059 -1.8 -1.5 DNA-binding protein HU-alpha compare
Pf6N2E2_4372 -1.8 -5.2 FIG00460773: hypothetical protein compare
Pf6N2E2_2480 -1.7 -1.8 FIG00957636: hypothetical protein compare
Pf6N2E2_5950 -1.7 -4.4 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_3351 -1.7 -4.3 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2586 -1.6 -2.1 Hpt domain protein compare
Pf6N2E2_4658 -1.6 -3.7 FIG00955006: hypothetical protein compare
Pf6N2E2_2181 -1.6 -1.7 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4077 -1.6 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3984 -1.6 -7.2 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4743 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_4747 -1.4 -3.0 Transmembrane sensor compare
Pf6N2E2_5666 -1.4 -6.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2864 -1.4 -2.2 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_2514 -1.4 -3.0 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_4352 -1.3 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2549 -1.3 -2.3 hypothetical protein compare
Pf6N2E2_1718 -1.3 -1.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_248 -1.3 -6.4 hypothetical protein compare
Pf6N2E2_3095 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_2065 -1.3 -3.2 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_178 -1.3 -1.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4362 -1.3 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4659 -1.2 -4.0 Lipoprotein, putative compare
Pf6N2E2_2693 -1.2 -1.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5746 -1.2 -2.5 Cobalamin synthase compare
Pf6N2E2_4305 -1.2 -1.4 FIG00959590: hypothetical protein compare
Pf6N2E2_3947 -1.2 -2.3 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_3077 -1.2 -3.1 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_1034 -1.1 -1.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_6140 -1.1 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2384 -1.1 -3.4 CmpX compare
Pf6N2E2_1173 -1.1 -2.5 hypothetical protein compare
Pf6N2E2_3533 -1.1 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_2675 -1.1 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4612 -1.1 -3.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5190 -1.1 -6.1 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_3607 -1.1 -4.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4205 -1.1 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1281 -1.1 -2.6 ATPase involved in DNA repair compare
Pf6N2E2_4614 -1.1 -2.1 twitching motility protein PilH compare
Pf6N2E2_5667 -1.0 -4.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5030 -1.0 -3.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_1717 -1.0 -5.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_443 -1.0 -1.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1305 -1.0 -1.8 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_3255 -1.0 -2.8 YrbA protein compare
Pf6N2E2_1667 -1.0 -1.1 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3938 -0.9 -6.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_3557 -0.9 -2.3 Chaperone-modulator protein CbpM compare
Pf6N2E2_2503 -0.9 -1.6 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5676 -0.9 -2.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5086 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_6099 -0.9 -1.2 tRNA-Glu-TTC compare
Pf6N2E2_2536 -0.9 -1.5 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_652 -0.9 -1.9 General secretion pathway protein E compare
Pf6N2E2_1176 -0.9 -2.4 Mll2356 protein compare
Pf6N2E2_1884 -0.9 -2.6 oxidoreductase, short-chain dehydrogenase/reductase family compare
Pf6N2E2_2003 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_51 -0.9 -3.4 hypothetical protein compare
Pf6N2E2_3460 -0.9 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5329 -0.9 -3.4 Alpha/beta hydrolase compare
Pf6N2E2_3534 -0.9 -1.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_4331 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_1153 -0.9 -2.8 small molecule metabolism; degradation; fatty acid compare
Pf6N2E2_613 -0.9 -1.4 lipoprotein, putative compare
Pf6N2E2_5312 -0.9 -1.4 FIG00964214: hypothetical protein compare
Pf6N2E2_955 -0.9 -2.1 FIG00953508: hypothetical protein compare
Pf6N2E2_5103 -0.8 -1.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_6130 -0.8 -1.9 5S RNA compare
Pf6N2E2_5188 -0.8 -2.6 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5714 -0.8 -1.7 Flavoprotein WrbA compare
Pf6N2E2_855 -0.8 -1.8 Transcriptional regulator, IclR family compare
Pf6N2E2_3933 -0.8 -3.8 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_1336 -0.8 -2.5 AraC family transcription regulator compare
Pf6N2E2_5738 -0.8 -4.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_968 -0.8 -2.3 FIG00962395: hypothetical protein compare
Pf6N2E2_4120 -0.8 -4.9 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5237 -0.8 -1.6 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_734 -0.8 -2.2 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1606 -0.8 -3.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_441 -0.8 -2.1 FIG00958773: hypothetical protein compare
Pf6N2E2_1605 -0.8 -4.2 Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) compare
Pf6N2E2_2634 -0.8 -4.9 Potassium uptake protein TrkH compare
Pf6N2E2_4824 -0.8 -2.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_3132 -0.8 -2.4 FIG00954548: hypothetical protein compare
Pf6N2E2_5816 -0.8 -0.7 Smr domain protein compare
Pf6N2E2_4708 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2391 -0.8 -4.4 FIG137360: hypothetical protein compare
Pf6N2E2_4570 -0.8 -1.0 Cation/multidrug efflux pump compare
Pf6N2E2_2367 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_3021 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5207 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_704 -0.7 -1.9 Cytochrome c551/c552 compare
Pf6N2E2_2509 -0.7 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1490 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_623 -0.7 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_778 -0.7 -2.5 Probable lipoprotein signal peptide compare
Pf6N2E2_1470 -0.7 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_1839 -0.7 -2.0 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_2708 -0.7 -2.6 Lactam utilization protein LamB compare
Pf6N2E2_97 -0.7 -2.1 putataive branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5794 -0.7 -1.2 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3908 -0.7 -2.9 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2869 -0.7 -1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_2156 -0.7 -1.8 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3531 -0.7 -2.7 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_6070 -0.7 -2.0 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_2870 -0.7 -1.7 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_4476 -0.7 -2.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf6N2E2_4548 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_319 -0.7 -2.5 DUF1850 domain-containing protein compare
Pf6N2E2_2420 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_1783 -0.7 -1.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2772 -0.7 -4.2 Uracil-DNA glycosylase, family 1 compare
Pf6N2E2_4121 -0.7 -2.1 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_2068 -0.7 -3.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_2111 -0.7 -1.4 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2418 -0.7 -1.0 DNA-binding response regulator, LuxR family compare
Pf6N2E2_37 -0.7 -1.6 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_1074 -0.7 -1.9 FIG00953356: hypothetical protein compare
Pf6N2E2_170 -0.7 -1.3 lipoprotein, putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in carbon source experiments

For carbon source D-Gluconic Acid sodium salt across organisms