Experiment set1IT008 for Paraburkholderia graminis OAS925

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_005863 -4.7 -8.5 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_001279 -4.5 -8.1 glucose/mannose transport system permease protein compare
ABIE53_001277 -4.3 -10.7 glucose/mannose transport system substrate-binding protein compare
ABIE53_003305 -4.1 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_002762 -4.1 -2.8 enolase compare
ABIE53_001228 -4.0 -5.4 phosphoadenosine phosphosulfate reductase compare
ABIE53_000414 -4.0 -16.6 homoserine O-acetyltransferase compare
ABIE53_004803 -3.9 -3.8 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_003752 -3.9 -1.7 cytochrome c-type biogenesis protein CcsB compare
ABIE53_000798 -3.8 -5.2 peptidyl-prolyl cis-trans isomerase SurA compare
ABIE53_002004 -3.8 -8.8 anti-sigma factor RsiW compare
ABIE53_003231 -3.7 -2.5 DNA-directed RNA polymerase subunit omega compare
ABIE53_001226 -3.6 -6.5 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_003734 -3.6 -8.7 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_004801 -3.6 -6.9 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_001275 -3.6 -2.0 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_004811 -3.5 -7.2 tryptophan synthase alpha chain compare
ABIE53_001232 -3.5 -2.4 sirohydrochlorin cobaltochelatase compare
ABIE53_001314 -3.5 -10.9 phosphoenolpyruvate carboxylase compare
ABIE53_004255 -3.5 -2.4 hypothetical protein compare
ABIE53_000768 -3.5 -10.6 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_003306 -3.5 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001278 -3.5 -7.5 glucose/mannose transport system permease protein compare
ABIE53_000061 -3.5 -5.7 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003749 -3.4 -6.6 diaminopimelate decarboxylase compare
ABIE53_001230 -3.4 -10.0 sulfate adenylyltransferase subunit 1 compare
ABIE53_002739 -3.4 -4.0 outer membrane protein assembly factor BamB compare
ABIE53_003536 -3.4 -7.2 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_003531 -3.4 -2.3 Fur family ferric uptake transcriptional regulator compare
ABIE53_003815 -3.4 -2.3 tRNA-Arg compare
ABIE53_001347 -3.3 -10.7 putative porin compare
ABIE53_004817 -3.3 -9.9 O-succinylhomoserine sulfhydrylase compare
ABIE53_001280 -3.3 -3.9 multiple sugar transport system ATP-binding protein compare
ABIE53_000838 -3.3 -9.4 starvation-inducible DNA-binding protein compare
ABIE53_004325 -3.3 -2.3 hypothetical protein compare
ABIE53_004866 -3.3 -18.6 RNA polymerase primary sigma factor compare
ABIE53_004227 -3.3 -5.4 signal transduction histidine kinase compare
ABIE53_003158 -3.2 -4.5 phosphoserine aminotransferase compare
ABIE53_003735 -3.2 -5.3 hypothetical protein compare
ABIE53_003157 -3.2 -9.4 chorismate mutase/prephenate dehydratase compare
ABIE53_002117 -3.2 -5.7 ATP-dependent Lon protease compare
ABIE53_003588 -3.2 -4.3 glutamate 5-kinase compare
ABIE53_000663 -3.1 -14.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_004804 -3.1 -7.1 3-isopropylmalate dehydrogenase compare
ABIE53_000649 -3.1 -3.6 peroxiredoxin compare
ABIE53_001273 -3.0 -11.2 glucokinase compare
ABIE53_000419 -3.0 -1.8 two-component system sensor histidine kinase RegB compare
ABIE53_003017 -3.0 -11.6 trehalose 6-phosphate phosphatase compare
ABIE53_003640 -3.0 -6.7 anthranilate synthase component 1 compare
ABIE53_003428 -3.0 -4.5 phosphoglycerate kinase compare
ABIE53_000423 -3.0 -4.5 DnaK suppressor protein compare
ABIE53_002857 -2.9 -14.4 phosphomethylpyrimidine synthase compare
ABIE53_000830 -2.9 -3.7 preprotein translocase subunit YajC compare
ABIE53_002116 -2.9 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_003159 -2.9 -6.4 phosphoserine aminotransferase compare
ABIE53_001544 -2.8 -2.7 coproporphyrinogen III oxidase compare
ABIE53_000840 -2.8 -5.4 pyrroline-5-carboxylate reductase compare
ABIE53_000667 -2.8 -6.5 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_001229 -2.8 -8.6 sulfate adenylyltransferase subunit 2 compare
ABIE53_001225 -2.8 -6.6 LysR family cys regulon transcriptional activator compare
ABIE53_000731 -2.8 -12.3 putative PurR-regulated permease PerM compare
ABIE53_002077 -2.7 -1.8 phosphoserine phosphatase compare
ABIE53_003733 -2.7 -4.0 glutamate synthase domain-containing protein 3 compare
ABIE53_001588 -2.7 -5.0 triosephosphate isomerase compare
ABIE53_004094 -2.7 -2.5 hypothetical protein compare
ABIE53_003517 -2.6 -6.5 phosphogluconate dehydratase compare
ABIE53_001644 -2.6 -4.3 aromatic-amino-acid transaminase compare
ABIE53_000045 -2.6 -8.6 5-formyltetrahydrofolate cyclo-ligase compare
ABIE53_005516 -2.6 -2.8 beta-RFAP synthase compare
ABIE53_000465 -2.5 -13.5 cation diffusion facilitator family transporter compare
ABIE53_005570 -2.4 -2.1 hypothetical protein compare
ABIE53_006090 -2.4 -2.3 antitoxin MazE compare
ABIE53_003565 -2.4 -4.3 thiol-disulfide isomerase/thioredoxin compare
ABIE53_004718 -2.4 -2.3 LysR family glycine cleavage system transcriptional activator compare
ABIE53_001227 -2.4 -2.3 uncharacterized protein (DUF934 family) compare
ABIE53_006508 -2.4 -4.9 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_004482 -2.4 -1.8 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_001276 -2.3 -10.8 glucose-6-phosphate 1-dehydrogenase compare
ABIE53_001420 -2.3 -4.6 cytochrome c553 compare
ABIE53_005079 -2.3 -2.0 DNA-binding transcriptional LysR family regulator compare
ABIE53_003711 -2.3 -11.2 phospholipid/cholesterol/gamma-HCH transport system permease protein compare
ABIE53_003737 -2.2 -13.0 outer membrane protein compare
ABIE53_000666 -2.2 -4.3 preprotein translocase subunit SecB compare
ABIE53_000063 -2.2 -4.4 adenosylhomocysteinase compare
ABIE53_002794 -2.2 -3.0 PAS domain S-box-containing protein compare
ABIE53_006022 -2.2 -2.0 hypothetical protein compare
ABIE53_000046 -2.2 -9.5 putative MarR family transcription regulator compare
ABIE53_002528 -2.1 -2.0 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_002862 -2.1 -10.2 outer membrane protein assembly factor BamC compare
ABIE53_005596 -2.1 -9.5 DNA-binding IclR family transcriptional regulator compare
ABIE53_005281 -2.1 -3.2 cytochrome c oxidase subunit 2 compare
ABIE53_003444 -2.1 -4.6 succinyl-CoA synthetase alpha subunit compare
ABIE53_005185 -2.1 -2.1 DNA-binding transcriptional LysR family regulator compare
ABIE53_003586 -2.1 -8.7 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_003298 -2.0 -5.7 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_005390 -2.0 -2.6 hypothetical protein compare
ABIE53_003712 -2.0 -8.8 phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein compare
ABIE53_004435 -2.0 -2.3 hypothetical protein compare
ABIE53_001970 -2.0 -3.8 type IV secretory pathway TrbL component compare
ABIE53_003287 -1.9 -8.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
ABIE53_003843 -1.9 -2.5 tRNA-Gly compare
ABIE53_005380 -1.9 -1.8 DNA-binding transcriptional LysR family regulator compare
ABIE53_000883 -1.9 -1.8 colicin import membrane protein compare
ABIE53_003541 -1.9 -8.6 RNAse (barnase) inhibitor barstar compare
ABIE53_003445 -1.9 -4.5 succinyl-CoA synthetase beta subunit compare
ABIE53_001846 -1.8 -6.0 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_003160 -1.8 -9.3 hypothetical protein compare
ABIE53_000394 -1.8 -10.1 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_002138 -1.8 -6.3 glucose-6-phosphate isomerase compare
ABIE53_003979 -1.8 -2.8 4-hydroxy-3-polyprenylbenzoate decarboxylase compare
ABIE53_000678 -1.8 -6.7 cytochrome c oxidase subunit 3 compare
ABIE53_003162 -1.8 -3.5 OOP family OmpA-OmpF porin compare
ABIE53_003707 -1.8 -3.9 phospholipid transport system transporter-binding protein compare
ABIE53_001994 -1.7 -6.4 LysR family cys regulon transcriptional activator compare
ABIE53_003494 -1.7 -3.2 Holliday junction DNA helicase RuvA compare
ABIE53_002981 -1.7 -2.1 hypothetical protein compare
ABIE53_006282 -1.7 -3.1 DNA-binding HxlR family transcriptional regulator compare
ABIE53_002947 -1.6 -1.1 simple sugar transport system ATP-binding protein compare
ABIE53_002729 -1.6 -4.5 KUP system potassium uptake protein compare
ABIE53_000393 -1.6 -7.1 hypothetical protein compare
ABIE53_005984 -1.6 -2.3 nitrite reductase/ring-hydroxylating ferredoxin subunit compare
ABIE53_000650 -1.6 -8.6 thiol-disulfide isomerase/thioredoxin compare
ABIE53_002494 -1.6 -3.0 outer membrane protein compare
ABIE53_000674 -1.6 -6.8 cytochrome c oxidase subunit 1 compare
ABIE53_005752 -1.5 -4.8 DNA-binding PadR family transcriptional regulator compare
ABIE53_000413 -1.5 -4.0 methionine biosynthesis protein MetW compare
ABIE53_003708 -1.5 -9.0 phospholipid transport system substrate-binding protein compare
ABIE53_005821 -1.5 -1.1 DNA-binding MurR/RpiR family transcriptional regulator compare
ABIE53_001757 -1.5 -1.5 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_001572 -1.5 -3.2 hypothetical protein compare
ABIE53_004368 -1.5 -2.2 hypothetical protein compare
ABIE53_000682 -1.4 -7.7 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_003710 -1.4 -8.6 phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein compare
ABIE53_002703 -1.4 -0.8 aspartate kinase compare
ABIE53_000683 -1.4 -7.6 protoheme IX farnesyltransferase compare
ABIE53_006322 -1.4 -2.4 6-phosphogluconolactonase compare
ABIE53_006300 -1.4 -1.6 hypothetical protein compare
ABIE53_003417 -1.4 -6.0 two-component system OmpR family sensor kinase compare
ABIE53_005070 -1.4 -6.2 DNA-binding GntR family transcriptional regulator compare
ABIE53_002208 -1.4 -1.1 methyl-accepting chemotaxis protein compare
ABIE53_001554 -1.4 -2.2 K+-transporting ATPase ATPase B chain compare
ABIE53_004826 -1.3 -8.4 1,4-alpha-glucan branching enzyme compare
ABIE53_001992 -1.3 -6.7 sulfate transport system permease protein compare
ABIE53_002101 -1.3 -4.7 two-component system phosphate regulon response regulator OmpR compare
ABIE53_002507 -1.3 -4.2 [protein-PII] uridylyltransferase compare
ABIE53_004630 -1.3 -0.8 hypothetical protein compare
ABIE53_002352 -1.3 -5.3 AcrR family transcriptional regulator compare
ABIE53_006196 -1.3 -2.6 lipoprotein NlpD compare
ABIE53_005978 -1.3 -1.7 sporulation protein YlmC with PRC-barrel domain compare
ABIE53_002546 -1.3 -2.2 cell wall-associated NlpC family hydrolase compare
ABIE53_000262 -1.3 -1.5 chromosome partitioning protein compare
ABIE53_002232 -1.3 -1.6 tellurite resistance protein compare
ABIE53_000313 -1.3 -9.4 glutamate--cysteine ligase compare
ABIE53_004760 -1.3 -2.7 hypothetical protein compare
ABIE53_004151 -1.3 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
ABIE53_001571 -1.3 -4.2 putative Fe-S protein YdhL (DUF1289 family) compare
ABIE53_001991 -1.3 -4.0 sulfate transport system permease protein compare
ABIE53_004341 -1.2 -3.1 D-alanyl-D-alanine dipeptidase compare
ABIE53_000403 -1.2 -3.0 rod shape-determining protein MreD compare
ABIE53_005198 -1.2 -2.2 rhodanese-related sulfurtransferase compare
ABIE53_000633 -1.2 -1.6 hypothetical protein compare
ABIE53_004408 -1.2 -1.2 hypothetical protein compare
ABIE53_003674 -1.2 -3.6 AcrR family transcriptional regulator compare
ABIE53_000858 -1.2 -6.5 heat-inducible transcriptional repressor compare
ABIE53_001503 -1.2 -2.0 FixJ family two-component response regulator compare
ABIE53_005000 -1.2 -1.3 hypothetical protein compare
ABIE53_002987 -1.2 -6.4 hypothetical protein compare
ABIE53_000885 -1.2 -4.1 biopolymer transport protein TolQ compare
ABIE53_000675 -1.2 -3.0 hypothetical protein compare
ABIE53_005283 -1.2 -1.7 hypothetical protein compare
ABIE53_001966 -1.2 -6.4 alkanesulfonate monooxygenase compare
ABIE53_005972 -1.2 -1.6 ATP-dependent DNA ligase compare
ABIE53_006277 -1.2 -1.5 sulfonate transport system permease protein compare
ABIE53_000795 -1.2 -4.6 MurNAc alpha-1-phosphate uridylyltransferase compare
ABIE53_002788 -1.2 -5.3 IclR family KDG regulon transcriptional repressor compare
ABIE53_002748 -1.2 -6.1 outer membrane protein assembly factor BamC compare
ABIE53_001443 -1.2 -5.2 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000665 -1.2 -3.2 glutaredoxin 3 compare
ABIE53_005142 -1.1 -1.3 acyl-CoA reductase-like NAD-dependent aldehyde dehydrogenase compare
ABIE53_006341 -1.1 -1.3 methylglutaconyl-CoA hydratase compare
ABIE53_002402 -1.1 -1.5 low affinity Fe/Cu permease compare
ABIE53_003669 -1.1 -1.8 CspA family cold shock protein compare
ABIE53_000236 -1.1 -5.4 aminomethyltransferase compare
ABIE53_000525 -1.1 -1.1 hypothetical protein compare
ABIE53_006272 -1.1 -3.4 AcrR family transcriptional regulator compare
ABIE53_005905 -1.1 -1.6 alkyl hydroperoxide reductase subunit F compare
ABIE53_005039 -1.1 -2.7 glycine/D-amino acid oxidase-like deaminating enzyme compare
ABIE53_000657 -1.1 -5.1 glutathione synthase compare
ABIE53_004168 -1.1 -3.3 transcriptional regulator with XRE-family HTH domain compare
ABIE53_003683 -1.1 -7.7 ubiquinol-cytochrome c reductase cytochrome c1 subunit compare
ABIE53_000122 -1.1 -1.1 hypothetical protein compare
ABIE53_006265 -1.1 -3.3 glycine/D-amino acid oxidase-like deaminating enzyme compare
ABIE53_003361 -1.1 -4.5 integrase/recombinase XerD compare
ABIE53_005383 -1.0 -2.2 methyl-accepting chemotaxis protein compare
ABIE53_001611 -1.0 -2.1 acyl dehydratase compare
ABIE53_006380 -1.0 -1.9 hypothetical protein compare
ABIE53_002587 -1.0 -1.9 DHA2 family multidrug resistance protein compare
ABIE53_005782 -1.0 -0.4 hypothetical protein compare
ABIE53_001530 -1.0 -2.7 hypothetical protein compare
ABIE53_006538 -1.0 -1.3 N-hydroxyarylamine O-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Paraburkholderia graminis OAS925 in carbon source experiments

For carbon source D-Raffinose pentahydrate across organisms