Experiment set1IT007 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -6.2 -4.2 indole-3-glycerol-phosphate synthase compare
AO356_21405 -5.6 -3.9 3-isopropylmalate dehydratase compare
AO356_00950 -5.2 -7.1 Ribokinase (EC 2.7.1.15) (from data) conserved
AO356_14435 -4.7 -6.5 anthranilate phosphoribosyltransferase compare
AO356_08635 -4.6 -9.7 ATP phosphoribosyltransferase regulatory subunit compare
AO356_06970 -4.5 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_12525 -4.5 -8.6 acetylglutamate kinase compare
AO356_06965 -4.4 -6.8 histidinol dehydrogenase compare
AO356_21440 -4.4 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_09815 -4.3 -5.1 imidazoleglycerol-phosphate dehydratase compare
AO356_18275 -4.2 -13.6 ornithine carbamoyltransferase compare
AO356_16175 -4.1 -6.8 acetolactate synthase 3 regulatory subunit compare
AO356_21415 -4.0 -9.0 3-isopropylmalate dehydrogenase compare
AO356_09800 -4.0 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_09810 -4.0 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_18325 -4.0 -12.3 argininosuccinate synthase compare
AO356_00970 -3.9 -8.1 LacI family transcriptional regulator conserved
AO356_09520 -3.9 -4.6 phosphoribosyl-AMP cyclohydrolase compare
AO356_09370 -3.9 -13.4 glutamate synthase compare
AO356_20300 -3.9 -8.5 transcriptional regulator compare
AO356_16170 -3.8 -11.0 acetolactate synthase 3 catalytic subunit compare
AO356_03350 -3.8 -5.8 glycosyl transferase compare
AO356_15165 -3.8 -2.6 protein cII compare
AO356_09375 -3.8 -21.4 glutamate synthase compare
AO356_13085 -3.7 -10.7 N-acetylglutamate synthase compare
AO356_00960 -3.7 -7.0 ABC transporter permease conserved
AO356_16180 -3.7 -14.5 ketol-acid reductoisomerase compare
AO356_19795 -3.7 -2.5 glycerol-3-phosphate dehydrogenase compare
AO356_10910 -3.6 -8.8 tryptophan synthase subunit alpha compare
AO356_12520 -3.5 -2.4 orotate phosphoribosyltransferase compare
AO356_16075 -3.4 -5.6 Fis family transcriptional regulator compare
AO356_19090 -3.4 -2.3 phosphoribosylaminoimidazole synthetase compare
AO356_13250 -3.4 -10.1 dihydroxy-acid dehydratase compare
AO356_02175 -3.3 -8.2 transaldolase compare
AO356_13605 -3.2 -10.1 5,10-methylenetetrahydrofolate reductase compare
AO356_06550 -3.2 -8.8 2-isopropylmalate synthase compare
AO356_13410 -3.2 -12.6 homoserine O-acetyltransferase compare
AO356_08905 -3.2 -2.2 glycosyl transferase compare
AO356_21400 -3.1 -4.6 isopropylmalate isomerase compare
AO356_12020 -3.1 -13.0 pyruvate carboxylase subunit A compare
AO356_10915 -3.1 -9.2 tryptophan synthase subunit beta compare
AO356_13405 -3.1 -9.1 methionine biosynthesis protein MetW compare
AO356_16095 -3.0 -10.4 molecular chaperone DnaK compare
AO356_09525 -3.0 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_01745 -2.9 -3.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_10300 -2.9 -3.9 3-phosphoglycerate dehydrogenase compare
AO356_10350 -2.9 -12.6 phosphoenolpyruvate-protein phosphotransferase compare
AO356_00965 -2.8 -7.1 sugar ABC transporter ATP-binding protein conserved
AO356_21470 -2.8 -7.1 O-succinylhomoserine sulfhydrylase compare
AO356_05160 -2.8 -7.8 glucose-6-phosphate dehydrogenase compare
AO356_14420 -2.8 -13.0 anthranilate synthase compare
AO356_00555 -2.7 -10.7 sulfite reductase compare
AO356_07480 -2.7 -2.6 carbamoyl phosphate synthase large subunit compare
AO356_12025 -2.7 -13.8 pyruvate carboxylase subunit B compare
AO356_16050 -2.6 -2.5 glucose-6-phosphate isomerase compare
AO356_21275 -2.4 -1.9 peptidase compare
AO356_11030 -2.4 -11.1 phosphate ABC transporter ATP-binding protein compare
AO356_11845 -2.4 -11.7 glycosyltransferase compare
AO356_11850 -2.4 -15.0 glycosyltransferase compare
AO356_00955 -2.4 -5.2 LacI family transcriptional regulator conserved
AO356_17520 -2.4 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_21465 -2.3 -5.1 amidophosphoribosyltransferase compare
AO356_10585 -2.3 -12.0 hypothetical protein compare
AO356_07915 -2.3 -2.6 exodeoxyribonuclease V subunit beta compare
AO356_19085 -2.2 -8.4 phosphoribosylglycinamide formyltransferase compare
AO356_00560 -2.2 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_01750 -2.2 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO356_11035 -2.2 -9.9 phosphate ABC transporter permease compare
AO356_07910 -2.1 -1.4 exodeoxyribonuclease V subunit alpha compare
AO356_25750 -2.1 -3.8 GntR family transcriptional regulator compare
AO356_22200 -2.0 -7.6 sirohydrochlorin ferrochelatase compare
AO356_08735 -2.0 -9.6 phosphoserine phosphatase compare
AO356_06005 -2.0 -4.3 zinc metallopeptidase RseP compare
AO356_12780 -2.0 -5.5 argininosuccinate lyase compare
AO356_11040 -1.9 -14.0 phosphate ABC transporter permease compare
AO356_08585 -1.9 -3.9 50S ribosomal protein L9 compare
AO356_12375 -1.9 -10.5 histidine kinase compare
AO356_01245 -1.8 -8.3 glycogen branching protein compare
AO356_11025 -1.8 -4.9 transcriptional regulator PhoU compare
AO356_08235 -1.8 -7.4 histidine kinase compare
AO356_08985 -1.7 -1.5 hypothetical protein compare
AO356_11045 -1.7 -9.3 phosphate-binding protein compare
AO356_11005 -1.7 -11.0 histidine kinase compare
AO356_03405 -1.6 -3.9 serine acetyltransferase compare
AO356_04560 -1.6 -2.7 serine peptidase compare
AO356_04575 -1.6 -8.1 RNA polymerase subunit sigma compare
AO356_07020 -1.5 -1.9 LPS export ABC transporter periplasmic protein LptC compare
AO356_03415 -1.5 -7.0 oxidoreductase compare
AO356_12015 -1.4 -6.1 LysR family transcriptional regulator compare
AO356_14430 -1.4 -5.7 anthranilate synthase compare
AO356_20155 -1.4 -4.2 phosphate acyltransferase compare
AO356_11450 -1.4 -1.6 cytochrome C compare
AO356_19520 -1.4 -3.1 isochorismatase compare
AO356_08955 -1.4 -7.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_29125 -1.4 -1.8 vanillate monooxygenase compare
AO356_17070 -1.3 -1.3 cytochrome B compare
AO356_20520 -1.3 -2.2 oxidoreductase compare
AO356_18805 -1.3 -1.4 magnesium transporter compare
AO356_06685 -1.3 -1.6 preprotein translocase subunit YajC compare
AO356_03810 -1.3 -3.6 anti-anti-sigma factor compare
AO356_20470 -1.2 -2.2 hypothetical protein compare
AO356_04970 -1.2 -5.4 aspartate-semialdehyde dehydrogenase compare
AO356_06385 -1.2 -2.9 recombinase XerD compare
AO356_01875 -1.2 -1.2 Cro/Cl family transcriptional regulator compare
AO356_03715 -1.2 -6.2 chemotaxis protein CheA compare
AO356_12485 -1.2 -3.5 DNA-directed RNA polymerase subunit omega compare
AO356_23155 -1.1 -6.3 RpiR family transcriptional regulator compare
AO356_18020 -1.1 -2.8 ATP-dependent DNA helicase RuvA compare
AO356_13395 -1.1 -1.7 non-canonical purine NTP pyrophosphatase compare
AO356_12895 -1.1 -9.4 polyphosphate kinase compare
AO356_02580 -1.1 -3.1 GntR family transcriptional regulator compare
AO356_11315 -1.1 -1.2 shikimate dehydrogenase compare
AO356_06170 -1.1 -4.2 hypothetical protein compare
AO356_18910 -1.1 -7.4 chemotaxis protein compare
AO356_07055 -1.1 -1.8 phosphocarrier protein HPr compare
AO356_10340 -1.1 -7.0 phosphoserine phosphatase compare
AO356_14075 -1.1 -1.8 amino acid ABC transporter substrate-binding protein compare
AO356_03725 -1.1 -2.5 histidine kinase compare
AO356_07050 -1.1 -5.3 glmZ(sRNA)-inactivating NTPase compare
AO356_17065 -1.0 -0.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_07005 -1.0 -1.7 ABC transporter ATP-binding protein compare
AO356_20915 -1.0 -2.6 thiamine pyrophosphate-binding protein compare
AO356_21285 -1.0 -4.8 histidine kinase compare
AO356_14395 -1.0 -7.6 polyamine ABC transporter substrate-binding protein compare
AO356_10485 -1.0 -1.7 hypothetical protein compare
AO356_26645 -1.0 -3.0 crotonase compare
AO356_03400 -1.0 -3.8 aminotransferase DegT compare
AO356_22795 -1.0 -1.4 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_14335 -0.9 -2.7 rRNA methyltransferase compare
AO356_25260 -0.9 -1.2 iron transporter compare
AO356_12640 -0.9 -1.9 cytochrome C compare
AO356_18000 -0.9 -1.1 FmdB family transcriptional regulator compare
AO356_11585 -0.9 -2.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_20175 -0.9 -1.2 3-oxoacyl-ACP synthase compare
AO356_03095 -0.9 -4.6 protease HtpX compare
AO356_18245 -0.9 -3.8 DeoR family transcriptional regulator compare
AO356_28560 -0.9 -4.1 transcriptional regulator compare
AO356_15815 -0.9 -1.7 gamma-glutamyl kinase compare
AO356_18025 -0.9 -1.7 ATP-dependent DNA helicase RuvB compare
AO356_21460 -0.9 -2.5 colicin V production CvpA compare
AO356_09040 -0.9 -5.2 potassium:proton antiporter compare
AO356_27995 -0.9 -1.9 thioredoxin reductase compare
AO356_27180 -0.9 -2.3 hypothetical protein compare
AO356_18810 -0.9 -2.5 DNA-binding protein compare
AO356_22870 -0.9 -2.4 glycerate kinase compare
AO356_05165 -0.9 -6.6 transcriptional regulator compare
AO356_06960 -0.9 -4.0 histidinol-phosphate aminotransferase compare
AO356_08875 -0.9 -2.0 toluene tolerance protein compare
AO356_11820 -0.9 -4.1 sugar ABC transporter ATP-binding protein compare
AO356_07110 -0.9 -3.3 ribonuclease G compare
AO356_03365 -0.9 -2.3 UDP-N-acetylglucosamine 2-epimerase compare
AO356_07385 -0.9 -1.1 tRNA-Thr compare
AO356_13275 -0.8 -1.5 multidrug transporter compare
AO356_12825 -0.8 -0.7 hypothetical protein compare
AO356_04275 -0.8 -1.2 3-oxoacyl-ACP synthase compare
AO356_27925 -0.8 -2.1 MarR family transcriptional regulator compare
AO356_30345 -0.8 -2.3 IclR family transcriptional regulator compare
AO356_07000 -0.8 -2.1 ABC transporter permease compare
AO356_04180 -0.8 -1.8 hypothetical protein compare
AO356_28300 -0.8 -1.0 hypothetical protein compare
AO356_07920 -0.8 -3.2 exodeoxyribonuclease V subunit gamma compare
AO356_17485 -0.8 -2.8 elongation factor 4 compare
AO356_20275 -0.8 -4.5 glutathione S-transferase compare
AO356_02735 -0.8 -1.1 type III secretion regulator InvE compare
AO356_18730 -0.8 -4.4 arginine N-succinyltransferase compare
AO356_11610 -0.8 -1.3 glycerol acyltransferase compare
AO356_16080 -0.8 -5.3 ATPase compare
AO356_02290 -0.8 -1.9 TetR family transcriptional regulator compare
AO356_00880 -0.8 -1.1 integration host factor subunit alpha compare
AO356_09760 -0.8 -1.5 glutaredoxin compare
AO356_07905 -0.8 -2.3 hypothetical protein compare
AO356_14870 -0.8 -2.6 dTDP-4-dehydrorhamnose reductase compare
AO356_27405 -0.8 -1.9 MarR family transcriptional regulator compare
AO356_03180 -0.8 -2.5 CysB family transcriptional regulator compare
AO356_03345 -0.8 -4.4 hypothetical protein compare
AO356_13675 -0.8 -2.8 ArsR family transcriptional regulator compare
AO356_03425 -0.8 -4.3 chain-length determining protein compare
AO356_00565 -0.8 -3.5 peptidase compare
AO356_29355 -0.8 -1.2 hypothetical protein compare
AO356_11060 -0.8 -5.1 aldose epimerase compare
AO356_02315 -0.7 -2.4 DNA topoisomerase I compare
AO356_29695 -0.7 -2.1 polysaccharide deacetylase compare
AO356_23425 -0.7 -2.8 saccharopine dehydrogenase compare
AO356_12380 -0.7 -3.4 ATP-dependent DNA helicase RecG compare
AO356_18340 -0.7 -2.5 leucyl-tRNA synthetase compare
AO356_25535 -0.7 -1.0 hypothetical protein compare
AO356_05010 -0.7 -4.8 diguanylate cyclase compare
AO356_02445 -0.7 -1.6 prevent-host-death protein compare
AO356_04230 -0.7 -1.8 3-phosphoglycerate kinase compare
AO356_16040 -0.7 -4.2 SAM-dependent methyltransferase compare
AO356_03800 -0.7 -1.0 histidine kinase compare
AO356_08880 -0.7 -3.1 glycosyl transferase compare
AO356_06980 -0.7 -2.1 BolA family transcriptional regulator compare
AO356_23595 -0.7 -0.9 short-chain dehydrogenase compare
AO356_19420 -0.7 -1.1 septum formation inhibitor compare
AO356_04460 -0.7 -1.4 sugar translocase compare
AO356_21515 -0.7 -1.1 antitoxin compare
AO356_01255 -0.7 -4.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_08215 -0.7 -3.5 tRNA-dihydrouridine synthase B compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Ribose across organisms