Experiment set1IT007 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_09560 +2.5 21.5 glucosyltransferase MdoH compare
AO356_03855 +2.3 19.4 AAA family ATPase compare
AO356_09565 +2.3 18.5 glucan biosynthesis protein G compare
AO356_04570 +1.9 8.5 RNA polymerase subunit sigma compare
AO356_18920 +1.8 13.0 flagellar basal-body rod protein FlgC compare
AO356_11420 +1.8 13.9 histidine kinase compare
AO356_03825 +1.6 7.6 flagellar assembly protein FliH compare
AO356_03820 +1.6 13.3 flagellar protein export ATPase FliI compare
AO356_18915 +1.6 10.6 flagellar biosynthesis protein FlgB compare
AO356_03815 +1.5 8.6 flagellar biogenesis protein compare
AO356_03760 +1.5 9.5 flagellar biosynthetic protein FliR compare
AO356_18930 +1.5 13.2 flagellar biosynthesis protein FlgE compare
AO356_03765 +1.4 8.7 flagellar biosynthetic protein FliQ compare
AO356_03785 +1.4 10.5 flagellar motor switch protein FliM compare
AO356_02170 +1.4 6.4 tRNA-dihydrouridine synthase A compare
AO356_03755 +1.3 10.7 flagellar biosynthetic protein FlhB compare
AO356_03840 +1.3 8.9 flagellar hook-basal body protein FliE compare
AO356_03930 +1.3 6.2 flagellar biosynthesis protein FlgF compare
AO356_03830 +1.3 8.1 flagellar motor switch protein FliG compare
AO356_03925 +1.3 7.4 flagellar basal-body rod protein FlgG compare
AO356_03770 +1.3 6.1 flagellar biosynthesis protein flip compare
AO356_03835 +1.3 9.7 flagellar M-ring protein FliF compare
AO356_03910 +1.2 7.8 flagellar biosynthesis protein FlgJ compare
AO356_18900 +1.2 7.1 flagellar biosynthesis protein FlgA compare
AO356_03745 +1.2 10.3 flagellar biosynthesis protein FlhA compare
AO356_14050 +1.2 2.3 glutathione S-transferase compare
AO356_18925 +1.1 5.9 flagellar biosynthesis protein FlgD compare
AO356_00170 +1.1 3.3 lytic transglycosylase compare
AO356_03915 +1.0 7.6 flagellar biosynthesis protein FlgI compare
AO356_03730 +1.0 8.0 flagellar biosynthesis sigma factor compare
AO356_03680 +1.0 8.5 chemotaxis protein compare
AO356_03920 +1.0 6.9 flagellar basal body L-ring protein compare
AO356_15420 +1.0 4.5 hypothetical protein compare
AO356_07210 +0.9 3.2 histidine kinase compare
AO356_27690 +0.9 5.6 mannitol dehydrogenase compare
AO356_03865 +0.9 6.7 flagellar export chaperone FliS compare
AO356_03210 +0.9 2.0 hypothetical protein compare
AO356_03795 +0.9 6.4 flagellar hook-length control protein compare
AO356_03880 +0.9 6.0 flagellin compare
AO356_19515 +0.9 1.0 hypothetical protein compare
AO356_08895 +0.9 1.9 GlcNAc-PI de-N-acetylase compare
AO356_26485 +0.9 2.1 hypothetical protein compare
AO356_14505 +0.9 1.8 peptidase M23 compare
AO356_27065 +0.9 6.8 phosphoglucomutase compare
AO356_28975 +0.8 3.8 alkanesulfonate monooxygenase compare
AO356_21430 +0.8 5.8 peptidoglycan-binding protein compare
AO356_05225 +0.8 3.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_03905 +0.8 5.5 flagellar biosynthesis protein FlgK compare
AO356_26025 +0.8 6.2 glycogen synthase compare
AO356_15260 +0.8 1.1 dehydratase compare
AO356_26395 +0.8 1.0 hypothetical protein compare
AO356_02285 +0.7 4.5 beta-hexosaminidase compare
AO356_12885 +0.7 5.3 hypothetical protein compare
AO356_03775 +0.7 1.4 flagellar assembly protein FliO compare
AO356_01985 +0.7 1.7 head completion/stabilization protein compare
AO356_03850 +0.7 4.9 histidine kinase compare
AO356_21685 +0.7 1.8 hypothetical protein compare
AO356_25420 +0.7 2.2 chemotaxis protein CheY compare
AO356_18890 +0.7 2.8 flagellar biosynthesis protein FlgN compare
AO356_09570 +0.7 2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
AO356_20850 +0.7 3.6 hypothetical protein compare
AO356_10000 +0.7 3.6 hypothetical protein compare
AO356_18145 +0.7 4.5 quinolinate synthase A compare
AO356_03790 +0.7 4.6 flagellar basal body protein FliL compare
AO356_21200 +0.7 1.4 quercetin 2,3-dioxygenase compare
AO356_15175 +0.7 1.7 hypothetical protein compare
AO356_00920 +0.7 1.9 cold-shock protein compare
AO356_03845 +0.7 3.9 Fis family transcriptional regulator compare
AO356_12625 +0.7 2.2 cytochrome C2 compare
AO356_05885 +0.7 5.0 RNA polymerase sigma factor RpoS compare
AO356_15290 +0.7 1.6 gamma-glutamyl phosphate reductase compare
AO356_14355 +0.6 4.5 aminoglycoside phosphotransferase compare
AO356_04815 +0.6 1.2 hypothetical protein compare
AO356_26915 +0.6 1.6 Fe-S oxidoreductase compare
AO356_26655 +0.6 1.7 (2Fe-2S)-binding protein compare
AO356_13505 +0.6 1.8 chemotaxis protein compare
AO356_19840 +0.6 3.5 histidine kinase compare
AO356_06360 +0.6 1.3 hypothetical protein compare
AO356_04565 +0.6 4.6 RNA polymerase subunit sigma compare
AO356_17840 +0.6 1.2 pilus assembly protein PilZ compare
AO356_15325 +0.6 1.4 hypothetical protein compare
AO356_04580 +0.6 5.3 L-aspartate oxidase compare
AO356_22090 +0.6 2.5 GNAT family acetyltransferase compare
AO356_09995 +0.6 3.7 LysR family transcriptional regulator compare
AO356_08370 +0.6 2.3 urease subunit gamma compare
AO356_21370 +0.6 2.2 hydrolase compare
AO356_24745 +0.6 2.0 iron dicitrate transport regulator FecR compare
AO356_29730 +0.6 0.9 MarR family transcriptional regulator compare
AO356_28990 +0.6 2.0 SfnB family sulfur acquisition oxidoreductase compare
AO356_26245 +0.6 1.0 energy transducer TonB compare
AO356_18395 +0.6 0.9 exclusion suppressor FxsA compare
AO356_21115 +0.6 2.7 alpha/beta hydrolase compare
AO356_12515 +0.6 1.9 exodeoxyribonuclease III compare
AO356_08705 +0.6 3.6 flagellar motor protein MotB compare
AO356_02005 +0.6 1.6 hypothetical protein compare
AO356_09855 +0.6 4.4 hypothetical protein compare
AO356_29080 +0.6 1.5 ornithine cyclodeaminase compare
AO356_22370 +0.6 2.2 hypothetical protein compare
AO356_09080 +0.6 1.2 thioredoxin compare
AO356_03900 +0.6 4.4 flagellar biosynthesis protein FlgL compare
AO356_08710 +0.5 4.3 flagellar motor stator protein MotA compare
AO356_05540 +0.5 1.5 cold-shock protein compare
AO356_19610 +0.5 1.1 2-hydroxy-3-oxopropionate reductase compare
AO356_26895 +0.5 1.9 2Fe-2S ferredoxin compare
AO356_04650 +0.5 2.6 lipid kinase compare
AO356_17420 +0.5 1.9 ketosteroid isomerase compare
AO356_29630 +0.5 1.9 hypothetical protein compare
AO356_15750 +0.5 1.2 hypothetical protein compare
AO356_03285 +0.5 1.4 hypothetical protein compare
AO356_24545 +0.5 2.4 peptidase S54 compare
AO356_09380 +0.5 4.2 cell division protein compare
AO356_20265 +0.5 2.0 hypothetical protein compare
AO356_02955 +0.5 1.0 hypothetical protein compare
AO356_09600 +0.5 1.3 histidine ammonia-lyase compare
AO356_00915 +0.5 3.0 hypothetical protein compare
AO356_10560 +0.5 4.3 ABC transporter compare
AO356_24125 +0.5 1.7 hypothetical protein compare
AO356_19300 +0.5 4.2 peptidylprolyl isomerase compare
AO356_27640 +0.5 1.7 chemotaxis protein CheB compare
AO356_24965 +0.5 1.4 GntR family transcriptional regulator compare
AO356_20830 +0.5 1.7 phosphoadenosine phosphosulfate reductase compare
AO356_25795 +0.5 1.2 transglutaminase compare
AO356_04420 +0.5 1.9 ribonuclease D compare
AO356_29315 +0.5 1.5 acyl-CoA dehydrogenase compare
AO356_10185 +0.5 3.2 glutamate--cysteine ligase compare
AO356_29715 +0.5 2.8 2OG-Fe(II) oxygenase compare
AO356_12300 +0.5 2.4 type VI secretion protein compare
AO356_18060 +0.5 2.8 hypothetical protein compare
AO356_24820 +0.5 1.8 calcium-binding protein compare
AO356_28330 +0.5 1.6 secretion protein HlyD compare
AO356_04345 +0.5 1.8 hypothetical protein compare
AO356_03780 +0.5 1.0 flagellar motor switch protein compare
AO356_17400 +0.5 1.7 transcriptional regulator compare
AO356_27695 +0.5 2.7 Xylulose kinase (EC 2.7.1.17) (from data) compare
AO356_18320 +0.5 3.6 hypothetical protein compare
AO356_27495 +0.5 1.7 short-chain dehydrogenase compare
AO356_21220 +0.5 1.3 peptide ABC transporter substrate-binding protein compare
AO356_01430 +0.5 2.2 NADP oxidoreductase compare
AO356_10005 +0.5 3.7 branched-chain amino acid permease (azaleucine resistance) compare
AO356_01545 +0.5 0.8 hypothetical protein compare
AO356_20220 +0.5 3.1 hypothetical protein compare
AO356_24550 +0.5 1.2 hypothetical protein compare
AO356_07360 +0.5 3.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO356_26980 +0.5 2.2 amino acid transporter compare
AO356_25720 +0.5 0.8 polyamine ABC transporter permease compare
AO356_18995 +0.5 3.4 hypothetical protein compare
AO356_09775 +0.5 3.6 peptidase M23 compare
AO356_30035 +0.5 1.5 aminomethyltransferase compare
AO356_03240 +0.5 1.3 transcription elongation factor GreB compare
AO356_10555 +0.5 3.8 hemolysin secretion protein D compare
AO356_29735 +0.5 1.3 hypothetical protein compare
AO356_16610 +0.5 3.2 hypothetical protein compare
AO356_12810 +0.5 3.7 transcriptional regulator compare
AO356_10015 +0.5 4.0 protein BsmA compare
AO356_29200 +0.5 2.0 sugar ABC transporter substrate-binding protein compare
AO356_28710 +0.5 0.8 aldehyde dehydrogenase compare
AO356_24740 +0.5 1.0 RNA polymerase subunit sigma-24 compare
AO356_02275 +0.5 1.9 hypothetical protein compare
AO356_13685 +0.5 1.4 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_01755 +0.5 1.1 trigger factor compare
AO356_29375 +0.5 1.8 ABC transporter permease compare
AO356_10570 +0.5 4.3 large adhesive protein compare
AO356_11340 +0.5 0.6 NADH-flavin reductase compare
AO356_00530 +0.4 1.7 precorrin-4 C11-methyltransferase compare
AO356_01150 +0.4 2.2 sugar transferase compare
AO356_23645 +0.4 0.9 hypothetical protein compare
AO356_04535 +0.4 2.4 glycine cleavage system protein R compare
AO356_08610 +0.4 2.5 exoribonuclease R compare
AO356_09780 +0.4 1.6 peptidase S41 compare
AO356_17855 +0.4 2.3 AAA family ATPase compare
AO356_13000 +0.4 3.2 hypothetical protein compare
AO356_25150 +0.4 1.2 molybdenum cofactor biosynthesis protein B compare
AO356_00930 +0.4 2.2 hypothetical protein compare
AO356_19175 +0.4 1.2 alpha-ribazole phosphatase compare
AO356_28045 +0.4 2.2 amino acid ABC transporter substrate-binding protein compare
AO356_00995 +0.4 2.3 carbon storage regulator CsrA compare
AO356_06780 +0.4 1.4 hypothetical protein compare
AO356_19315 +0.4 1.4 hypothetical protein compare
AO356_11185 +0.4 2.2 cytochrome oxidase biogenesis protein Surf1,facilitates heme A insertion compare
AO356_16140 +0.4 1.8 hypothetical protein compare
AO356_21455 +0.4 1.5 cell division protein compare
AO356_22675 +0.4 0.8 sulfate transporter compare
AO356_06760 +0.4 1.9 transcriptional antiterminator compare
AO356_23500 +0.4 2.6 TetR family transcriptional regulator compare
AO356_29025 +0.4 1.2 hypothetical protein compare
AO356_08180 +0.4 1.0 chemotaxis protein compare
AO356_19120 +0.4 2.6 peptidase P60 compare
AO356_06615 +0.4 0.7 FeS assembly protein IscX compare
AO356_04875 +0.4 2.7 antibiotic transporter compare
AO356_24000 +0.4 2.4 hydroxyacid dehydrogenase compare
AO356_19115 +0.4 2.3 peptidase P60 compare
AO356_22345 +0.4 1.8 potassium transporter KefC compare
AO356_01525 +0.4 2.4 arginine N-succinyltransferase compare
AO356_16670 +0.4 3.1 adenylylsulfate kinase compare
AO356_07540 +0.4 0.9 SsrA-binding protein compare
AO356_24440 +0.4 2.1 diguanylate cyclase compare
AO356_01990 +0.4 1.6 phage tail protein compare
AO356_26800 +0.4 1.2 aldehyde dehydrogenase compare
AO356_14820 +0.4 1.2 Isochorismatase compare
AO356_19565 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Ribose across organisms