Experiment set1IT007 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Dimethyl Sulfoxide 1 vol%

200 most important genes:

  gene name fitness t score description  
Psyr_4740 -4.4 -5.2 thiazole-phosphate synthase compare
Psyr_0951 -4.0 -4.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1544 -3.9 -4.6 SirA-like protein compare
Psyr_4340 -3.7 -7.7 phosphomethylpyrimidine kinase, putative compare
Psyr_1613 -3.5 -4.1 septum site-determining protein MinC compare
Psyr_4684 -3.3 -3.1 biotin synthesis protein BioC compare
Psyr_4341 -3.2 -9.0 thiamine-phosphate diphosphorylase compare
Psyr_4686 -3.1 -5.2 8-amino-7-oxononanoate synthase compare
Psyr_3008 -2.8 -6.3 Undecaprenyl-diphosphatase compare
Psyr_0259 -2.8 -4.5 Osmolarity sensor protein envZ compare
Psyr_4687 -2.8 -5.5 biotin synthase compare
Psyr_0014 -2.6 -4.6 lipid A biosynthesis acyltransferase compare
Psyr_0917 -2.6 -9.2 ABC-2 compare
Psyr_4683 -2.5 -4.9 dethiobiotin synthase compare
Psyr_4091 -2.4 -4.5 8-oxo-dGTPase compare
Psyr_0918 -2.4 -11.6 ABC transporter compare
Psyr_4581 -2.3 -4.0 anthranilate synthase, component II compare
Psyr_0565 -2.3 -5.9 Protein of unknown function UPF0126 compare
Psyr_0487 -2.3 -3.3 glutathione synthase compare
Psyr_1907 -2.2 -3.8 GTP cyclohydrolase I compare
Psyr_1373 -2.2 -2.9 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3808 -2.2 -2.5 hypothetical protein compare
Psyr_1751 -2.1 -5.9 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1930 -2.1 -4.2 hypothetical protein compare
Psyr_2855 -1.9 -4.3 methionine synthase (B12-independent) compare
Psyr_0528 -1.9 -2.5 Carbamoyltransferase compare
Psyr_0849 -1.9 -10.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_1555 -1.9 -4.2 Cobyrinic acid a,c-diamide synthase compare
Psyr_0475 -1.8 -3.3 Protein of unknown function YGGT compare
Psyr_0529 -1.8 -4.5 Glycosyl transferase, group 1 compare
Psyr_0454 -1.7 -4.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_2980 -1.7 -3.7 UDP-glucose pyrophosphorylase compare
Psyr_0373 -1.6 -2.6 CDS compare
Psyr_0826 -1.6 -5.8 glucose-6-phosphate isomerase compare
Psyr_3620 -1.6 -2.4 hypothetical protein compare
Psyr_4627 -1.6 -2.6 dimethyladenosine transferase compare
Psyr_1410 -1.5 -4.5 Holliday junction DNA helicase RuvB compare
Psyr_4408 -1.5 -7.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1556 -1.5 -2.0 hypothetical protein compare
Psyr_3954 -1.5 -4.8 GTP-binding protein LepA compare
Psyr_2854 -1.5 -4.3 conserved hypothetical protein compare
Psyr_1121 -1.5 -2.1 6-phosphogluconolactonase compare
Psyr_0827 -1.4 -3.1 pantothenate synthetase compare
Psyr_4203 -1.4 -2.0 SsrA-binding protein compare
Psyr_2080 -1.4 -5.4 aminodeoxychorismate synthase, subunit I compare
Psyr_0033 -1.4 -4.1 tryptophan synthase, alpha chain compare
Psyr_4143 -1.4 -2.7 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_4089 -1.4 -5.1 PAS compare
Psyr_2642 -1.4 -4.1 hypothetical protein compare
Psyr_0255 -1.4 -1.6 glutamate-cysteine ligase compare
Psyr_1748 -1.4 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4424 -1.4 -6.4 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3199 -1.4 -2.5 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4566 -1.3 -7.2 Peptidase M23B compare
Psyr_1371 -1.3 -5.8 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_4622 -1.3 -3.9 Nucleotidyl transferase compare
Psyr_0383 -1.3 -1.3 Twin-arginine translocation protein TatB compare
Psyr_3806 -1.3 -4.0 hypothetical protein compare
Psyr_3090 -1.3 -2.9 hypothetical protein compare
Psyr_3377 -1.3 -2.3 transcriptional regulator, MarR family compare
Psyr_2347 -1.2 -2.2 hypothetical protein compare
Psyr_3886 -1.2 -1.7 methionyl-tRNA synthetase compare
Psyr_3179 -1.2 -2.4 DNA translocase FtsK compare
Psyr_3039 -1.2 -3.3 protein of unknown function DUF883 compare
Psyr_1935 -1.2 -4.2 Protein of unknown function DUF796 compare
Psyr_5130 -1.2 -6.3 chromosome segregation ATPase compare
Psyr_2823 -1.2 -1.9 hypothetical protein compare
Psyr_3287 -1.2 -1.6 DNA topoisomerase I compare
Psyr_3581 -1.2 -3.9 ribosomal large subunit pseudouridine synthase B compare
Psyr_0575 -1.2 -3.1 protease FtsH subunit HflC compare
Psyr_0549 -1.2 -1.8 Metallophosphoesterase compare
Psyr_0831 -1.1 -2.1 Two-component response regulator CbrB compare
Psyr_3640 -1.1 -2.4 conserved hypothetical protein compare
Psyr_1783 -1.1 -2.3 CDS compare
Psyr_0579 -1.1 -7.3 RNAse R compare
Psyr_3673 -1.1 -1.9 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0303 -1.1 -3.4 Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein compare
Psyr_2562 -1.1 -1.8 hypothetical protein compare
Psyr_0268 -1.1 -2.0 DSBA oxidoreductase compare
Psyr_2346 -1.1 -3.6 conserved hypothetical protein compare
Psyr_1419 -1.1 -2.1 preQ(0) biosynthesis protein QueC compare
Psyr_3213 -1.1 -2.5 Propeptide, PepSY amd peptidase M4 compare
Psyr_2141 -1.1 -2.6 hypothetical protein compare
Psyr_1975 -1.0 -2.5 Integrase, catalytic region compare
Psyr_0137 -1.0 -1.8 outer membrane transport energization protein ExbD compare
Psyr_1268 -1.0 -4.9 extracellular solute-binding protein, family 3:SLT compare
Psyr_4991 -1.0 -1.8 hypothetical protein compare
Psyr_3947 -1.0 -1.9 Methyltransferase, putative compare
Psyr_1576 -1.0 -2.5 Glutamine amidotransferase, class-II compare
Psyr_3600 -1.0 -2.0 transcriptional regulator, LysR family compare
Psyr_2285 -1.0 -1.6 Twin-arginine translocation pathway signal compare
Psyr_3905 -1.0 -4.8 glycerol kinase compare
Psyr_1929 -1.0 -3.7 hypothetical protein compare
Psyr_0202 -1.0 -4.8 transcriptional regulator, LysR family compare
Psyr_5065 -1.0 -5.4 ATP-dependent DNA helicase UvrD compare
Psyr_1022 -1.0 -2.2 conserved hypothetical protein compare
Psyr_2540 -1.0 -1.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4362 -1.0 -2.4 Rare lipoprotein A compare
Psyr_4136 -1.0 -1.5 BolA-like protein compare
Psyr_4476 -1.0 -4.1 dTDP-4-dehydrorhamnose reductase compare
Psyr_2112 -1.0 -1.6 Protein with unknown function DUF469 compare
Psyr_2848 -1.0 -2.8 hypothetical protein compare
Psyr_2669 -1.0 -2.5 Aminoglycoside phosphotransferase compare
Psyr_2520 -0.9 -1.8 SOS-response transcriptional repressor, LexA compare
Psyr_4029 -0.9 -4.5 pyruvate kinase compare
Psyr_3702 -0.9 -1.9 Arsenate reductase compare
Psyr_0574 -0.9 -3.4 protease FtsH subunit HflK compare
Psyr_4788 -0.9 -2.1 lipoprotein, putative compare
Psyr_1934 -0.9 -3.2 conserved hypothetical protein compare
Psyr_3701 -0.9 -1.6 thioredoxin, putative compare
Psyr_1747 -0.9 -2.9 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3193 -0.9 -1.2 Transcription factor jumonji, jmjC compare
Psyr_3198 -0.9 -1.6 NADH dehydrogenase subunit B compare
Psyr_1796 -0.9 -1.7 GCN5-related N-acetyltransferase compare
Psyr_2461 -0.9 -2.3 Uncharacterized conserved protein UCP030820 compare
Psyr_3644 -0.9 -2.5 prephenate dehydrogenase compare
Psyr_1227 -0.9 -2.2 Queuosine biosynthesis protein compare
Psyr_4512 -0.9 -4.0 putative phage-related protein compare
Psyr_1460 -0.9 -3.3 hypothetical protein compare
Psyr_4658 -0.9 -2.5 CDS compare
Psyr_4316 -0.9 -2.2 conserved hypothetical protein compare
Psyr_3282 -0.9 -3.5 transcriptional regulator, TetR family compare
Psyr_2977 -0.9 -2.8 cointegrate resolution protein T compare
Psyr_1418 -0.9 -2.1 Radical SAM compare
Psyr_1408 -0.9 -1.9 Holliday junction endonuclease RuvC compare
Psyr_3590 -0.9 -2.1 conserved hypothetical protein compare
Psyr_2737 -0.9 -2.3 hypothetical protein compare
Psyr_2253 -0.9 -1.5 Phosphonate metabolism compare
Psyr_0498 -0.9 -2.7 Protein of unknown function DUF1445 compare
Psyr_1733 -0.9 -1.9 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_2804 -0.8 -2.2 hypothetical protein compare
Psyr_4989 -0.8 -1.9 hypothetical protein compare
Psyr_0832 -0.8 -4.5 Two-component sensor kinase CbrA compare
Psyr_1650 -0.8 -2.2 aminodeoxychorismate lyase apoprotein compare
Psyr_3728 -0.8 -3.1 hypothetical protein compare
Psyr_1924 -0.8 -2.8 hypothetical protein compare
Psyr_1094 -0.8 -1.6 cold-shock DNA-binding protein family compare
Psyr_0070 -0.8 -1.8 hypothetical protein compare
Psyr_2182 -0.8 -3.4 hypothetical protein compare
Psyr_4978 -0.8 -2.0 hypothetical protein compare
Psyr_4893 -0.8 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_RNA61 -0.8 -2.2 tRNA-Gly compare
Psyr_1667 -0.8 -3.1 Colicin V production protein compare
Psyr_4562 -0.8 -3.3 conserved domain protein compare
Psyr_2345 -0.8 -3.0 ea59 protein compare
Psyr_3152 -0.8 -1.1 hypothetical protein compare
Psyr_1247 -0.8 -1.2 conserved hypothetical protein compare
Psyr_0276 -0.8 -2.1 zinc uptake regulation protein, putative compare
Psyr_1009 -0.8 -2.0 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1910 -0.8 -2.9 VacJ-like lipoprotein compare
Psyr_1417 -0.8 -3.2 TPR repeat protein compare
Psyr_0927 -0.8 -2.3 hypothetical protein compare
Psyr_3133 -0.8 -1.0 Amidohydrolase 2 compare
Psyr_1919 -0.8 -3.5 hypothetical protein compare
Psyr_2095 -0.8 -2.9 Conserved TM helix compare
Psyr_3739 -0.7 -1.7 conserved hypothetical protein compare
Psyr_2860 -0.7 -2.0 hypothetical protein compare
Psyr_4822 -0.7 -1.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_3450 -0.7 -2.0 Hpt compare
Psyr_4001 -0.7 -2.0 conserved domain protein compare
Psyr_0215 -0.7 -4.9 Exodeoxyribonuclease III xth compare
Psyr_3020 -0.7 -1.3 precorrin-4 C11-methyltransferase compare
Psyr_1530 -0.7 -2.1 hypothetical protein compare
Psyr_2249 -0.7 -1.9 Binding-protein-dependent transport systems inner membrane component compare
Psyr_2664 -0.7 -3.3 hypothetical protein compare
Psyr_1633 -0.7 -0.8 MotA/TolQ/ExbB proton channel compare
Psyr_2853 -0.7 -3.1 CDS compare
Psyr_3208 -0.7 -1.2 NADH dehydrogenase subunit M compare
Psyr_3004 -0.7 -1.9 transcriptional regulator, LysR family compare
Psyr_0376 -0.7 -1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_3089 -0.7 -5.4 Hemolysin-type calcium-binding region:hemolysin-type calcium binding related protein compare
Psyr_0428 -0.7 -3.0 Monooxygenase, FAD-binding protein compare
Psyr_3675 -0.7 -1.7 adenosylcobinamide kinase compare
Psyr_1424 -0.7 -1.6 Peptidase S24, S26A and S26B compare
Psyr_4838 -0.7 -1.7 transcriptional regulator, MerR family compare
Psyr_3594 -0.7 -1.8 membrane protein-like protein compare
Psyr_2255 -0.7 -1.6 ABC transporter compare
Psyr_3341 -0.7 -1.9 hypothetical protein compare
Psyr_2200 -0.7 -1.2 UreE urease accessory, N-terminal compare
Psyr_3729 -0.7 -2.2 hypothetical protein compare
Psyr_1885 -0.7 -1.1 hypothetical protein compare
Psyr_3425 -0.7 -1.7 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_0920 -0.7 -5.5 Glycosyl transferase, group 1 compare
Psyr_1955 -0.7 -1.7 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_3904 -0.7 -3.5 Major intrinsic protein compare
Psyr_3428 -0.7 -2.8 CheW-like protein compare
Psyr_0623 -0.7 -1.5 Peptidase S24, S26A and S26B compare
Psyr_2462 -0.7 -2.1 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_5135 -0.7 -1.0 Protein of unknown function DUF37 compare
Psyr_0976 -0.7 -2.3 Malate:quinone-oxidoreductase compare
Psyr_2318 -0.7 -1.8 CDS compare
Psyr_4118 -0.7 -3.2 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_3692 -0.7 -1.3 conserved hypothetical protein compare
Psyr_3427 -0.7 -0.7 conserved hypothetical protein compare
Psyr_0531 -0.7 -1.0 LmbE-like protein compare
Psyr_3896 -0.7 -1.5 BFD-like [2Fe-2S]-binding region compare
Psyr_1097 -0.7 -1.0 glycine cleavage system H protein compare
Psyr_2898 -0.6 -3.1 Helix-turn-helix motif protein compare
Psyr_3120 -0.6 -1.7 D-glucarate dehydratase compare
Psyr_3809 -0.6 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in stress experiments

For stress Dimethyl Sulfoxide across organisms