Experiment set1IT007 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Cisplatin 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS05420 -5.1 -3.3 membrane protein compare
RR42_RS02705 -5.1 -2.1 Holliday junction DNA helicase RuvA compare
RR42_RS03080 -4.9 -3.4 recombinase RecA compare
RR42_RS15090 -4.6 -3.2 DNA helicase compare
RR42_RS05910 -4.5 -4.4 DNA repair protein conserved
RR42_RS13270 -4.5 -5.3 recombination protein RecR compare
RR42_RS06090 -4.3 -6.5 single-stranded DNA exonuclease conserved
RR42_RS14000 -4.2 -9.4 excinuclease ABC subunit C conserved
RR42_RS14030 -4.2 -4.1 DNA recombination protein RecO conserved
RR42_RS17390 -4.2 -5.0 ATP-dependent DNA helicase RecG compare
RR42_RS15035 -3.9 -2.7 ZIP zinc transporter compare
RR42_RS17385 -3.9 -7.9 LysR family transcriptional regulator compare
RR42_RS03035 -3.8 -1.5 membrane protein compare
RR42_RS07555 -3.8 -2.6 potassium transporter Kup compare
RR42_RS05995 -3.7 -11.1 excinuclease ABC subunit B conserved
RR42_RS36400 -3.6 -1.5 hypothetical protein compare
RR42_RS03085 -3.6 -1.5 RecX family transcriptional regulator compare
RR42_RS06355 -3.6 -4.2 Fe-S cluster assembly protein HesB compare
RR42_RS06485 -3.6 -6.8 chorismate synthase compare
RR42_RS19090 -3.5 -2.4 cytochrome C compare
RR42_RS02265 -3.5 -12.6 excinuclease ABC subunit A compare
RR42_RS18485 -3.5 -1.4 glutaredoxin compare
RR42_RS02145 -3.5 -12.6 excinuclease ABC subunit A conserved
RR42_RS05945 -3.4 -2.3 thioredoxin compare
RR42_RS12050 -3.4 -6.0 DNA polymerase compare
RR42_RS06250 -3.2 -2.2 dihydrodipicolinate synthase compare
RR42_RS24750 -3.2 -4.2 LysR family transcriptional regulator compare
RR42_RS12015 -3.1 -2.6 dihydrolipoamide acyltransferase compare
RR42_RS10855 -3.0 -1.2 diguanylate phosphodiesterase compare
RR42_RS20195 -2.9 -1.2 ATPase F0F1 compare
RR42_RS08180 -2.7 -1.5 hypothetical protein compare
RR42_RS12615 -2.7 -2.1 LexA family transcriptional regulator compare
RR42_RS26555 -2.6 -1.5 tRNA-Met compare
RR42_RS21435 -2.6 -2.6 hypothetical protein compare
RR42_RS17105 -2.6 -8.4 Clp protease ClpX compare
RR42_RS19310 -2.5 -11.0 ATP-dependent DNA helicase RecQ conserved
RR42_RS06630 -2.5 -1.3 integration host factor subunit alpha compare
RR42_RS21220 -2.5 -2.4 iron transporter FeoB compare
RR42_RS13935 -2.5 -3.0 hemin transporter compare
RR42_RS08945 -2.4 -1.4 hypothetical protein compare
RR42_RS15450 -2.4 -3.2 Tol system periplasmic component YbgF compare
RR42_RS07845 -2.4 -11.1 transcription-repair coupling factor conserved
RR42_RS15050 -2.4 -7.4 DNA polymerase I compare
RR42_RS01925 -2.4 -6.9 photosynthetic protein synthase I compare
RR42_RS27790 -2.4 -2.3 LuxR family transcriptional regulator compare
RR42_RS17865 -2.3 -6.6 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS06545 -2.3 -1.8 thioesterase compare
RR42_RS09015 -2.3 -3.4 trigger factor compare
RR42_RS14055 -2.3 -2.6 elongation factor 4 compare
RR42_RS15525 -2.3 -1.3 hypothetical protein compare
RR42_RS24820 -2.3 -2.5 hypothetical protein compare
RR42_RS11770 -2.3 -1.5 cyclase compare
RR42_RS12040 -2.3 -8.0 MFS transporter compare
RR42_RS07580 -2.3 -9.8 helicase conserved
RR42_RS29280 -2.2 -1.3 hypothetical protein compare
RR42_RS31900 -2.2 -2.8 short-chain dehydrogenase compare
RR42_RS16220 -2.2 -1.2 DNA polymerase III subunit chi compare
RR42_RS17685 -2.2 -6.9 alkyl hydroperoxide reductase compare
RR42_RS23515 -2.2 -4.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS18305 -2.1 -2.9 anthranilate phosphoribosyltransferase compare
RR42_RS06255 -2.1 -2.4 lipoprotein compare
RR42_RS07615 -2.1 -2.0 3-ketoacyl-ACP reductase compare
RR42_RS19765 -2.0 -1.8 arsenate reductase compare
RR42_RS13275 -2.0 -4.0 antibiotic biosynthesis monooxygenase compare
RR42_RS09375 -2.0 -1.1 taurine dioxygenase compare
RR42_RS06095 -2.0 -3.0 hypothetical protein compare
RR42_RS04475 -2.0 -6.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS00300 -2.0 -3.3 kinase compare
RR42_RS34570 -1.9 -1.6 hypothetical protein compare
RR42_RS08790 -1.9 -1.5 zinc-binding protein compare
RR42_RS04015 -1.9 -1.1 RNA polymerase sigma factor compare
RR42_RS17635 -1.9 -2.8 magnesium transporter CorA compare
RR42_RS36120 -1.9 -3.6 LysR family transcriptional regulator compare
RR42_RS14360 -1.9 -1.5 tryptophan synthase subunit alpha compare
RR42_RS18725 -1.9 -1.6 hypothetical protein compare
RR42_RS32975 -1.8 -1.7 LysR family transcriptional regulator compare
RR42_RS32585 -1.8 -1.5 cytochrome C oxidase compare
RR42_RS31945 -1.8 -2.3 enoyl-CoA hydratase compare
RR42_RS00900 -1.8 -2.4 2-hydroxychromene-2-carboxylate isomerase compare
RR42_RS07225 -1.8 -1.3 hypothetical protein compare
RR42_RS13730 -1.8 -2.0 TetR family transcriptional regulator compare
RR42_RS01775 -1.8 -4.3 glutamate--cysteine ligase compare
RR42_RS07130 -1.8 -1.4 hypothetical protein compare
RR42_RS14365 -1.8 -2.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS15895 -1.8 -5.1 uroporphyrinogen III methyltransferase compare
RR42_RS02775 -1.8 -1.8 molecular chaperone SurA compare
RR42_RS13685 -1.8 -2.1 cupin compare
RR42_RS26875 -1.8 -2.0 LysR family transcriptional regulator compare
RR42_RS15460 -1.7 -3.8 translocation protein TolB compare
RR42_RS34060 -1.7 -1.5 alpha/beta hydrolase compare
RR42_RS06710 -1.7 -1.4 hypothetical protein compare
RR42_RS07365 -1.7 -2.2 pyruvate dehydrogenase compare
RR42_RS24520 -1.7 -3.1 hypothetical protein compare
RR42_RS04320 -1.7 -4.0 cell division protein FtsK compare
RR42_RS04180 -1.7 -1.5 methyltransferase compare
RR42_RS32595 -1.7 -3.9 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS33695 -1.7 -1.7 membrane protein compare
RR42_RS18140 -1.6 -1.3 MarR family transcriptional regulator compare
RR42_RS05430 -1.6 -2.8 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS18270 -1.6 -2.3 murein transglycosylase compare
RR42_RS18855 -1.6 -2.8 preprotein translocase compare
RR42_RS28850 -1.6 -1.9 transcriptional regulator compare
RR42_RS27700 -1.6 -1.4 hypothetical protein compare
RR42_RS31530 -1.6 -2.0 histidine kinase compare
RR42_RS32805 -1.6 -1.5 damage-inducible protein compare
RR42_RS19005 -1.6 -4.5 3-dehydroquinate synthase compare
RR42_RS10920 -1.6 -1.7 hypothetical protein compare
RR42_RS27120 -1.6 -1.2 amino acid ABC transporter permease compare
RR42_RS09555 -1.6 -1.3 universal stress protein UspA compare
RR42_RS04060 -1.6 -1.8 hypothetical protein compare
RR42_RS01920 -1.5 -2.5 protoheme IX farnesyltransferase compare
RR42_RS22205 -1.5 -2.3 arabinose ABC transporter permease compare
RR42_RS09760 -1.5 -1.5 hypothetical protein compare
RR42_RS12240 -1.5 -1.2 hypothetical protein compare
RR42_RS17335 -1.5 -3.3 DeoR family transcriptional regulator compare
RR42_RS15470 -1.5 -1.5 biopolymer transporter ExbD compare
RR42_RS26740 -1.5 -1.5 protein serine/threonine phosphatase compare
RR42_RS07295 -1.5 -0.9 LysR family transcriptional regulator compare
RR42_RS03300 -1.5 -3.4 RND transporter compare
RR42_RS07920 -1.5 -1.3 cyclophilin-like superfamily protein compare
RR42_RS24510 -1.5 -1.1 hypothetical protein compare
RR42_RS08805 -1.5 -1.9 nitrate reductase compare
RR42_RS26455 -1.5 -0.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS21825 -1.4 -1.7 hypothetical protein compare
RR42_RS08465 -1.4 -2.1 hypothetical protein compare
RR42_RS08575 -1.4 -0.9 tail protein compare
RR42_RS05500 -1.4 -1.0 preprotein translocase subunit SecG compare
RR42_RS23910 -1.4 -1.8 hypothetical protein compare
RR42_RS12185 -1.4 -1.1 LysR family transcriptional regulator compare
RR42_RS33150 -1.4 -2.1 hypothetical protein compare
RR42_RS33690 -1.4 -1.1 phosphate acetyltransferase compare
RR42_RS20775 -1.4 -0.8 hypothetical protein compare
RR42_RS18995 -1.4 -6.3 transposase compare
RR42_RS07060 -1.4 -2.6 hypothetical protein compare
RR42_RS18385 -1.4 -0.8 hypothetical protein compare
RR42_RS07940 -1.4 -2.4 ABC transporter permease compare
RR42_RS06735 -1.4 -1.1 hypothetical protein compare
RR42_RS27065 -1.4 -1.3 hypothetical protein compare
RR42_RS13625 -1.4 -2.4 4-hydroxybenzoyl-CoA reductase compare
RR42_RS09780 -1.4 -2.2 hypothetical protein compare
RR42_RS04960 -1.4 -2.6 Fe(II)-dependent oxygenase compare
RR42_RS36315 -1.4 -2.1 fructose 2,6-bisphosphatase compare
RR42_RS08175 -1.4 -0.9 hypothetical protein compare
RR42_RS17110 -1.4 -5.6 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS05665 -1.4 -0.7 urease accessory protein UreJ compare
RR42_RS13595 -1.4 -2.0 hypothetical protein compare
RR42_RS27520 -1.4 -1.8 hypothetical protein compare
RR42_RS13515 -1.3 -2.9 membrane protein compare
RR42_RS17620 -1.3 -2.3 phosphatidylglycerophosphatase compare
RR42_RS25030 -1.3 -1.1 ABC transporter permease compare
RR42_RS22230 -1.3 -1.2 hypothetical protein compare
RR42_RS26620 -1.3 -2.1 hypothetical protein compare
RR42_RS23635 -1.3 -1.2 flagellar assembly protein FliT compare
RR42_RS28145 -1.3 -2.0 LysR family transcriptional regulator compare
RR42_RS15015 -1.3 -0.7 exodeoxyribonuclease VII small subunit compare
RR42_RS35250 -1.3 -1.2 alpha/beta hydrolase compare
RR42_RS16675 -1.3 -0.7 hypothetical protein compare
RR42_RS04535 -1.3 -3.2 cysteine synthase compare
RR42_RS13040 -1.3 -3.3 iron transporter compare
RR42_RS05810 -1.3 -1.0 RNA polymerase sigma factor compare
RR42_RS36045 -1.3 -3.3 hypothetical protein compare
RR42_RS10400 -1.3 -2.0 hypothetical protein compare
RR42_RS01795 -1.2 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS02310 -1.2 -1.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS17940 -1.2 -2.4 gamma-glutamyl kinase compare
RR42_RS19010 -1.2 -4.2 shikimate kinase compare
RR42_RS21720 -1.2 -1.1 acetoin catabolism protein X compare
RR42_RS16525 -1.2 -2.7 anti-sigma factor compare
RR42_RS35965 -1.2 -2.3 hypothetical protein compare
RR42_RS27695 -1.2 -1.6 polyketide cyclase compare
RR42_RS12345 -1.2 -1.7 hypothetical protein compare
RR42_RS20055 -1.2 -8.2 ATP-dependent DNA helicase Rep compare
RR42_RS33455 -1.2 -2.5 endoribonuclease L-PSP compare
RR42_RS36150 -1.2 -2.1 MarR family transcriptional regulator compare
RR42_RS14845 -1.2 -1.8 MarR family transcriptional regulator compare
RR42_RS37455 -1.2 -1.3 hypothetical protein compare
RR42_RS18295 -1.2 -5.6 anthranilate synthase component I compare
RR42_RS33260 -1.2 -3.8 multidrug MFS transporter compare
RR42_RS20925 -1.2 -2.4 Crp/Fnr family transcriptional regulator compare
RR42_RS24665 -1.2 -1.3 hypothetical protein compare
RR42_RS26765 -1.2 -2.5 polyketide cyclase compare
RR42_RS13800 -1.2 -4.2 formyltetrahydrofolate deformylase compare
RR42_RS13910 -1.2 -4.2 glutamate racemase compare
RR42_RS17375 -1.2 -0.9 hypothetical protein compare
RR42_RS11230 -1.2 -2.4 peptide ABC transporter ATP-binding protein compare
RR42_RS26080 -1.2 -0.8 hypothetical protein compare
RR42_RS00715 -1.2 -2.0 ferritin compare
RR42_RS04555 -1.2 -3.1 phosphate ABC transporter ATP-binding protein compare
RR42_RS26715 -1.2 -2.8 sulfonate ABC transporter substrate-binding protein compare
RR42_RS20095 -1.2 -1.8 peroxiredoxin compare
RR42_RS04420 -1.2 -3.0 required for efflux of an amino acid polymer (from data) compare
RR42_RS21150 -1.2 -1.0 hypothetical protein compare
RR42_RS00830 -1.2 -3.6 cell division protein FtsN compare
RR42_RS31830 -1.1 -0.9 short-chain dehydrogenase compare
RR42_RS14755 -1.1 -2.2 hypothetical protein compare
RR42_RS35930 -1.1 -3.3 DNA repair exonuclease compare
RR42_RS10565 -1.1 -2.1 alpha/beta hydrolase compare
RR42_RS30410 -1.1 -1.3 hypothetical protein compare
RR42_RS14520 -1.1 -1.1 mobilization protein compare
RR42_RS35725 -1.1 -1.2 flagellar biosynthesis protein FlgB compare


Specific Phenotypes

For 9 genes in this experiment

For stress Cisplatin in Cupriavidus basilensis FW507-4G11

For stress Cisplatin across organisms