Experiment set1IT007 for Caulobacter crescentus NA1000

Compare to:

D-Cellobiose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01848 +2.4 14.9 quinol cytochrome oxidase polypeptide IV compare
CCNA_01851 +2.3 18.0 quinol cytochrome oxidase polypeptide II compare
CCNA_01850 +2.3 16.8 quinol cytochrome oxidase polypeptide I compare
CCNA_01840 +2.1 16.4 MerR-family transcriptional regulator compare
CCNA_00684 +2.0 6.5 anti-sigma factor, ChrR-family compare
CCNA_01849 +2.0 10.8 quinol cytochrome oxidase polypeptide III compare
CCNA_03280 +1.9 15.8 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02004 +1.9 3.8 SOS-induced inhibitor of cell division SidA compare
CCNA_02250 +1.9 5.0 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_01790 +1.9 7.1 protein translocase subunit secG compare
CCNA_01712 +1.9 12.2 CopY/TcrY family transcriptional repressor compare
CCNA_01684 +1.8 8.3 phenylalanine-4-hydroxylase compare
CCNA_01681 +1.8 6.6 RimI-like acetyltransferase compare
CCNA_02591 +1.8 8.9 glutaredoxin compare
CCNA_01801 +1.8 7.7 hypothetical protein compare
CCNA_02646 +1.8 3.1 cell division protein MraZ compare
CCNA_02957 +1.8 5.7 ArsR-family transcriptional regulator compare
CCNA_01913 +1.7 10.5 MarR-family transcriptional regulator compare
CCNA_01804 +1.7 9.4 glutathione peroxidase compare
CCNA_01742 +1.7 6.8 hypothetical protein compare
CCNA_02021 +1.6 5.4 hypothetical protein compare
CCNA_01573 +1.6 8.8 ArsR-family transcriptional regulator compare
CCNA_01847 +1.6 10.5 cytochrome c oxidase assembly protein Surf1 compare
CCNA_02103 +1.6 6.9 hypothetical protein compare
CCNA_00699 +1.6 5.5 LSU ribosomal protein L28P compare
CCNA_01526 +1.6 5.4 flagellar biosynthesis regulatory protein flaF compare
CCNA_00895 +1.6 7.9 hypothetical protein compare
CCNA_R0054 +1.6 2.9 tRNA-Gly compare
CCNA_01593 +1.6 9.8 Xaa-pro aminopeptidase compare
CCNA_01931 +1.6 8.8 TetR-family transcriptional regulator compare
CCNA_03271 +1.6 10.1 methionine gamma-lyase compare
CCNA_01752 +1.6 8.5 YicC-family protein compare
CCNA_01979 +1.6 7.1 LexA repressor compare
CCNA_01968 +1.5 3.4 pentapeptide repeats containing protein compare
CCNA_03289 +1.5 10.2 HicB-family RNA-binding protein compare
CCNA_03287 +1.5 10.5 PadR-family transcriptional regulator compare
CCNA_02644 +1.5 4.1 cell division protein FtsL compare
CCNA_01361 +1.5 2.9 PepSY superfamily protein compare
CCNA_00518 +1.5 5.9 LSU ribosomal protein L25P compare
CCNA_03123 +1.5 9.7 ArsR-family transcriptional regulator compare
CCNA_00675 +1.5 5.6 VapC-like PIN domain ribonuclease compare
CCNA_03951 +1.5 5.6 hypothetical protein compare
CCNA_01541 +1.5 10.0 LysR-family transcriptional regulator compare
CCNA_03012 +1.5 9.2 peroxiredoxin compare
CCNA_02732 +1.5 4.4 hypothetical protein compare
CCNA_02980 +1.5 9.8 tryptophan 2,3-dioxygenase compare
CCNA_02416 +1.5 7.6 DNA-binding protein HU compare
CCNA_02619 +1.5 12.0 stomatin/prohibitin-related protein compare
CCNA_02805 +1.5 5.0 hypothetical protein compare
CCNA_03740 +1.5 7.1 cysteine synthase compare
CCNA_02617 +1.5 10.2 histidinol-phosphate aminotransferase compare
CCNA_01619 +1.4 8.5 NYN domain protein compare
CCNA_02448 +1.4 10.8 hypothetical protein compare
CCNA_01679 +1.4 9.1 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01680 +1.4 8.9 succinylarginine dihydrolase compare
CCNA_01655 +1.4 6.8 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_02287 +1.4 7.6 TetR-family transcriptional regulator compare
CCNA_01186 +1.4 8.0 hypothetical protein compare
CCNA_02942 +1.4 5.6 nucleoside-diphosphate-sugar epimerase compare
CCNA_02447 +1.4 10.7 PspA/IM30 family regulatory protein compare
CCNA_03989 +1.4 10.3 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02379 +1.4 8.1 hypothetical protein compare
CCNA_03129 +1.4 9.4 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01528 +1.4 8.2 flagellin fljK compare
CCNA_03064 +1.4 7.5 PadR-family transcriptional regulator compare
CCNA_00527 +1.4 7.2 hypothetical protein compare
CCNA_02289 +1.4 8.0 MarR/EmrR family transcriptional regulator compare
CCNA_02616 +1.4 8.6 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02339 +1.4 8.8 methyltransferase compare
CCNA_02728 +1.4 6.9 hypothetical protein compare
CCNA_03964 +1.4 2.9 hypothetical protein compare
CCNA_03959 +1.4 1.1 hypothetical protein compare
CCNA_02000 +1.4 1.8 SSU ribosomal protein S2P compare
CCNA_01505 +1.4 3.2 hypothetical protein compare
CCNA_00505 +1.4 6.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03108 +1.4 9.7 TonB-dependent outer membrane receptor compare
CCNA_02132 +1.4 6.0 LacI-family transcriptional regulator compare
CCNA_02338 +1.4 8.0 hypothetical protein compare
CCNA_01751 +1.4 4.2 aminodeoxychorismate lyase compare
CCNA_00846 +1.3 11.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03325 +1.3 4.9 hypothetical protein compare
CCNA_00919 +1.3 5.4 hypothetical protein compare
CCNA_01739 +1.3 6.9 LSU ribosomal protein L9P compare
CCNA_03936 +1.3 4.0 hypothetical protein compare
CCNA_01608 +1.3 5.9 TetR-family transcriptional regulator compare
CCNA_00264 +1.3 8.5 C4-dicarboxylate transport protein compare
CCNA_02534 +1.3 2.2 hypothetical protein compare
CCNA_00028 +1.3 5.2 TonB-dependent receptor compare
CCNA_01193 +1.3 9.7 amylosucrase compare
CCNA_03954 +1.3 1.8 hypothetical protein compare
CCNA_03524 +1.3 8.6 di-/tripeptide transporter compare
CCNA_00939 +1.3 5.0 MarR-family transcriptional regulator compare
CCNA_00769 +1.3 7.4 TetR family transcriptional regulator compare
CCNA_02687 +1.3 6.6 serine-pyruvate aminotransferase compare
CCNA_01677 +1.3 5.7 carboxypeptidase G2 precursor compare
CCNA_00756 +1.3 3.4 hypothetical protein compare
CCNA_01827 +1.3 6.3 cobyric acid synthase CobQ compare
CCNA_01678 +1.3 6.8 arginine N-succinyltransferase, beta chain compare
CCNA_00447 +1.3 7.2 chemotaxis protein cheD compare
CCNA_02273 +1.3 4.3 glutathione peroxidase compare
CCNA_02025 +1.3 3.6 hypothetical protein compare
CCNA_01826 +1.3 7.2 vitamin B12 receptor compare
CCNA_00931 +1.3 8.2 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_02475 +1.3 9.2 transcriptional regulator vanR compare
CCNA_03944 +1.3 1.2 hypothetical protein compare
CCNA_02164 +1.3 3.6 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_02297 +1.3 4.7 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_01780 +1.3 9.6 exopolyphosphatase compare
CCNA_01094 +1.3 2.5 hypothetical protein compare
CCNA_02976 +1.3 5.6 MCP-signal associated domain protein compare
CCNA_02330 +1.2 4.7 hypothetical protein compare
CCNA_03479 +1.2 6.3 MarR-family transcriptional regulator compare
CCNA_03252 +1.2 9.4 CopY/TcrY-family transcriptional regulator compare
CCNA_03089 +1.2 6.3 hypothetical protein compare
CCNA_02760 +1.2 2.4 hypothetical protein compare
CCNA_00705 +1.2 4.7 hypothetical protein compare
CCNA_01173 +1.2 6.4 chorismate mutase compare
CCNA_00847 +1.2 6.5 leucine-responsive regulatory protein compare
CCNA_03961 +1.2 5.1 hypothetical protein compare
CCNA_00945 +1.2 6.7 chemotaxis protein MotD compare
CCNA_01074 +1.2 1.9 entericidin B-like protein compare
CCNA_01525 +1.2 5.7 flagellar biosynthesis repressor flbT compare
CCNA_01575 +1.2 7.8 glucose / sorbosone dehydrogenase compare
CCNA_02878 +1.2 1.3 hypothetical protein compare
CCNA_00929 +1.2 8.6 Riboflavin-specific deaminase family protein compare
CCNA_01393 +1.2 9.3 soluble lytic murein transglycosylase compare
CCNA_02567 +1.2 9.0 sensory transduction histidine kinase pleC compare
CCNA_02387 +1.2 9.7 glutathione reductase compare
CCNA_02040 +1.2 2.2 phosphoserine phosphatase compare
CCNA_02367 +1.2 8.8 CelR-family transcriptional regulator compare
CCNA_R0037 +1.2 3.9 tRNA-Glu compare
CCNA_02910 +1.2 9.5 TonB-dependent receptor compare
CCNA_01533 +1.2 5.5 hypothetical protein compare
CCNA_01802 +1.2 2.3 hypothetical protein compare
CCNA_03515 +1.2 5.8 hypothetical protein compare
CCNA_02067 +1.2 6.2 conserved membrane spanning protein compare
CCNA_01339 +1.2 4.5 ArsR-family transcriptional regulator compare
CCNA_03214 +1.2 6.5 hypothetical protein compare
CCNA_02309 +1.2 5.0 EF hand domain protein compare
CCNA_01728 +1.2 6.0 short chain dehydrogenase compare
CCNA_02341 +1.2 6.1 small heat shock protein compare
CCNA_01748 +1.2 5.9 methyltransferase compare
CCNA_00441 +1.2 5.7 chemotaxis receiver domain protein cheYI compare
CCNA_00947 +1.2 8.5 flagellar hook protein FlgE compare
CCNA_03372 +1.2 3.0 bacterioferritin-associated ferredoxin compare
CCNA_02843 +1.1 3.2 toxin protein parE-3 compare
CCNA_00693 +1.1 3.0 heat shock protein 15 compare
CCNA_00750 +1.1 7.9 FeaR-family transcriptional regulator compare
CCNA_02063 +1.1 4.7 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01406 +1.1 5.1 metal-dependent hydrolase compare
CCNA_01942 +1.1 3.9 Rrf2 family protein compare
CCNA_01813 +1.1 6.0 tRNA-dihydrouridine synthase compare
CCNA_00834 +1.1 5.0 flagellin FljM compare
CCNA_03762 +1.1 2.5 acetolactate synthase-related protein compare
CCNA_02841 +1.1 3.4 hypothetical protein compare
CCNA_01949 +1.1 3.9 bactofilin A BacA compare
CCNA_02467 +1.1 6.7 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03062 +1.1 7.5 cell wall hydrolase family protein compare
CCNA_01338 +1.1 5.4 glyoxalase family protein compare
CCNA_00107 +1.1 2.8 Trm112p-like protein compare
CCNA_01731 +1.1 4.0 colicin V production protein CvpA compare
CCNA_03215 +1.1 6.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_03643 +1.1 1.4 succinate dehydrogenase membrane anchor subunit compare
CCNA_03107 +1.1 6.4 cytidine deaminase compare
CCNA_02324 +1.1 6.5 heat shock protein 33 hsp33 compare
CCNA_01531 +1.1 8.0 acetyltransferase compare
CCNA_00498 +1.1 3.5 hypothetical protein compare
CCNA_01415 +1.1 7.9 methyltransferase compare
CCNA_02729 +1.1 8.3 oligopeptide transporter compare
CCNA_01025 +1.1 6.1 hypothetical protein compare
CCNA_01242 +1.1 9.5 amino acid permease compare
CCNA_01184 +1.1 6.5 MutT/nudix family hydrolase compare
CCNA_03952 +1.1 5.0 hypothetical protein compare
CCNA_01414 +1.1 6.5 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_03379 +1.1 2.3 Cro/CI family transcriptional regulator compare
CCNA_00998 +1.1 5.0 ROS/MUCR transcriptional regulator compare
CCNA_00446 +1.1 5.6 chemotaxis receiver domain protein cheYII compare
CCNA_01530 +1.1 6.5 flagellin FljJ compare
CCNA_02125 +1.1 7.8 polar development protein podJ compare
CCNA_01926 +1.1 4.6 GGDEF diguanylate cyclase DgcB compare
CCNA_00448 +1.1 5.4 cheU protein compare
CCNA_03689 +1.0 7.2 alanine dehydrogenase compare
CCNA_00954 +1.0 7.6 AAA-family response regulator flbD compare
CCNA_01584 +1.0 8.5 multimodular transpeptidase-transglycosylase PBP 1A compare
CCNA_00114 +1.0 4.6 MarR/EmrR-family transcriptional regulator compare
CCNA_02614 +1.0 5.8 fumarylacetoacetase superfamily protein compare
CCNA_03391 +1.0 5.9 Cro/CI family transcriptional regulator compare
CCNA_00400 +1.0 4.3 MarR/EmrR-family transcriptional regulator compare
CCNA_00992 +1.0 6.8 hypothetical protein compare
CCNA_02042 +1.0 5.9 trigger factor chaperone compare
CCNA_03808 +1.0 6.4 organic solvent resistance transport system Ttg2C protein compare
CCNA_02384 +1.0 6.2 very-long-chain acyl-CoA synthetase compare
CCNA_01727 +1.0 7.0 methyl-accepting chemotaxis protein compare
CCNA_00682 +1.0 5.0 MarR-family transcriptional regulator compare
CCNA_01235 +1.0 5.4 AcrR-family transcriptional regulator compare
CCNA_03158 +1.0 5.6 iron-sulfur cluster assembly/repair protein ApbE compare
CCNA_03949 +1.0 4.7 hypothetical protein compare
CCNA_01295 +1.0 6.9 integral membrane protein compare
CCNA_03156 +1.0 4.5 putative periplasmic protein compare
CCNA_02012 +1.0 6.1 metal-dependent hydrolase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in carbon source experiments

For carbon source D-Cellobiose across organisms