Experiment set1IT007 for Burkholderia phytofirmans PsJN

Compare to:

D-Ribose carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS14255 +1.7 15.2 ABC transporter compare
BPHYT_RS14250 +1.7 11.2 glycosyl transferase compare
BPHYT_RS18825 +1.6 9.0 flagellar biosynthesis protein FliP compare
BPHYT_RS18945 +1.6 12.9 flagellar biosynthesis protein FlhB compare
BPHYT_RS18860 +1.5 6.7 flagellar P-ring protein FlgI compare
BPHYT_RS18785 +1.5 4.2 flagellar assembly protein FliH compare
BPHYT_RS18895 +1.5 3.9 flagellar basal body rod protein FlgB compare
BPHYT_RS18890 +1.5 9.4 flagellar basal body rod protein FlgC compare
BPHYT_RS18885 +1.5 7.8 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18875 +1.4 11.5 flagellar basal body rod protein FlgF compare
BPHYT_RS18900 +1.4 12.1 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18880 +1.4 10.7 flagellar hook protein FlgE compare
BPHYT_RS18870 +1.4 6.3 flagellar basal body rod protein FlgG compare
BPHYT_RS18935 +1.4 10.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS02765 +1.3 4.7 cytochrome BD oxidase subunit I compare
BPHYT_RS01790 +1.3 8.1 LuxR family transcriptional regulator compare
BPHYT_RS18925 +1.3 9.8 RNA polymerase sigma70 compare
BPHYT_RS18790 +1.3 7.0 ATP synthase compare
BPHYT_RS25135 +1.3 3.9 hypothetical protein compare
BPHYT_RS18940 +1.3 10.7 flagellar biosynthesis protein FlhA compare
BPHYT_RS18855 +1.3 7.7 flagellar rod assembly protein FlgJ compare
BPHYT_RS01795 +1.3 8.7 histidine kinase compare
BPHYT_RS18775 +1.3 9.3 flagellar M-ring protein FliF compare
BPHYT_RS18830 +1.2 8.7 flagellar biosynthesis protein FliQ compare
BPHYT_RS18810 +1.2 8.2 flagellar motor switch protein FliM compare
BPHYT_RS18835 +1.2 2.7 flagellar biosynthesis protein FliR compare
BPHYT_RS13320 +1.1 1.8 allantoate amidohydrolase compare
BPHYT_RS18780 +1.1 4.7 flagellar motor switch protein FliG compare
BPHYT_RS05395 +1.1 2.1 hypothetical protein compare
BPHYT_RS18795 +1.1 7.4 flagellar export protein FliJ compare
BPHYT_RS03655 +1.1 2.0 membrane protein compare
BPHYT_RS21585 +1.1 3.5 short-chain dehydrogenase compare
BPHYT_RS31020 +1.0 2.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS12280 +1.0 1.7 RNA helicase compare
BPHYT_RS09565 +1.0 1.7 acetyl-CoA acetyltransferase compare
BPHYT_RS18865 +1.0 3.6 flagellar L-ring protein FlgH compare
BPHYT_RS02770 +1.0 4.8 membrane protein compare
BPHYT_RS30795 +0.9 1.8 short-chain dehydrogenase compare
BPHYT_RS18805 +0.9 3.3 flagellar basal body protein FliL compare
BPHYT_RS02760 +0.9 3.7 cytochrome BD oxidase subunit II compare
BPHYT_RS09895 +0.9 1.7 LysR family transcriptional regulator compare
BPHYT_RS21215 +0.9 4.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS00690 +0.9 1.5 transcriptional regulator compare
BPHYT_RS34745 +0.9 1.8 hypothetical protein compare
BPHYT_RS00955 +0.8 3.0 DNA polymerase compare
BPHYT_RS01625 +0.8 2.4 chemotaxis protein CheY compare
BPHYT_RS08615 +0.8 1.5 hypothetical protein compare
BPHYT_RS35310 +0.8 1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS19025 +0.8 2.9 transcriptional regulator compare
BPHYT_RS23430 +0.8 1.5 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS18800 +0.8 5.0 flagellar hook-length control protein compare
BPHYT_RS30230 +0.8 2.5 LysR family transcriptional regulator compare
BPHYT_RS31030 +0.8 2.6 tyrosine protein kinase compare
BPHYT_RS00980 +0.8 1.2 GCN5 family acetyltransferase compare
BPHYT_RS23875 +0.8 1.3 sugar ABC transporter ATP-binding protein compare
BPHYT_RS35085 +0.8 3.7 transcriptional regulator compare
BPHYT_RS14400 +0.8 3.2 anti-sigma factor compare
BPHYT_RS03830 +0.7 2.6 hypothetical protein compare
BPHYT_RS14205 +0.7 5.0 lytic transglycosylase compare
BPHYT_RS35405 +0.7 1.3 hypothetical protein compare
BPHYT_RS29920 +0.7 1.0 hypothetical protein compare
BPHYT_RS24285 +0.7 1.0 TetR family transcriptional regulator compare
BPHYT_RS30745 +0.7 0.9 hypothetical protein compare
BPHYT_RS17240 +0.7 1.3 cell division protein FtsW compare
BPHYT_RS24670 +0.7 3.3 ABC transporter permease compare
BPHYT_RS33515 +0.7 4.8 porin compare
BPHYT_RS20095 +0.7 1.0 transcriptional regulator compare
BPHYT_RS22560 +0.7 3.7 flagellar transcriptional regulator FlhD compare
BPHYT_RS33170 +0.7 2.1 acetyltransferase compare
BPHYT_RS25140 +0.7 3.0 hypothetical protein compare
BPHYT_RS04335 +0.7 1.8 membrane protein compare
BPHYT_RS28965 +0.7 1.5 hypothetical protein compare
BPHYT_RS32870 +0.7 2.7 hypothetical protein compare
BPHYT_RS14735 +0.7 1.2 hypothetical protein compare
BPHYT_RS01620 +0.7 5.3 sensor histidine kinase compare
BPHYT_RS10040 +0.7 0.9 hypothetical protein compare
BPHYT_RS24665 +0.7 1.5 ABC transporter permease compare
BPHYT_RS00580 +0.7 3.0 hypothetical protein compare
BPHYT_RS10705 +0.7 2.1 MFS transporter compare
BPHYT_RS12590 +0.7 1.9 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS20715 +0.7 1.7 peptidase compare
BPHYT_RS25970 +0.7 1.1 urea amidolyase compare
BPHYT_RS33765 +0.7 1.0 membrane protein compare
BPHYT_RS07080 +0.7 1.7 glutathione S-transferase compare
BPHYT_RS31110 +0.7 1.1 hypothetical protein compare
BPHYT_RS25780 +0.7 1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS34780 +0.6 3.0 phytoene synthase compare
BPHYT_RS03090 +0.6 1.4 hypothetical protein compare
BPHYT_RS02975 +0.6 1.5 membrane protein compare
BPHYT_RS22865 +0.6 1.4 ATPase compare
BPHYT_RS24565 +0.6 1.6 membrane protein compare
BPHYT_RS25005 +0.6 1.0 FMN reductase compare
BPHYT_RS29365 +0.6 1.3 ATP-NAD kinase compare
BPHYT_RS17800 +0.6 2.8 hypothetical protein compare
BPHYT_RS20115 +0.6 1.7 transcriptional regulator compare
BPHYT_RS05095 +0.6 2.8 hydroxymethylpyrimidine transporter compare
BPHYT_RS12290 +0.6 1.5 universal stress protein UspA compare
BPHYT_RS32475 +0.6 1.6 dihydroxyacetone kinase compare
BPHYT_RS22765 +0.6 2.7 beta-galactosidase compare
BPHYT_RS19015 +0.6 4.2 flagellar motor protein MotA compare
BPHYT_RS05530 +0.6 2.6 hypothetical protein compare
BPHYT_RS16590 +0.6 3.7 Fis family transcriptional regulator compare
BPHYT_RS31015 +0.6 1.5 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS32730 +0.6 1.4 histidine phosphatase compare
BPHYT_RS32630 +0.6 2.5 tat pathway signal sequence compare
BPHYT_RS06390 +0.6 2.2 ribosome-associated protein IOJAP compare
BPHYT_RS36420 +0.6 1.9 hypothetical protein compare
BPHYT_RS09310 +0.6 3.0 sensor histidine kinase compare
BPHYT_RS23890 +0.6 1.7 MFS transporter compare
BPHYT_RS15490 +0.6 2.9 coproporphyrinogen III oxidase compare
BPHYT_RS21385 +0.6 1.5 short-chain dehydrogenase compare
BPHYT_RS30485 +0.6 0.8 ABC transporter ATP-binding protein compare
BPHYT_RS11140 +0.6 2.0 major facilitator transporter compare
BPHYT_RS29035 +0.6 0.9 arsenic transporter compare
BPHYT_RS28215 +0.6 2.1 D-ribose transporter ATP binding protein compare
BPHYT_RS27145 +0.6 1.3 TetR family transcriptional regulator compare
BPHYT_RS05340 +0.6 3.6 metal-dependent phosphohydrolase compare
BPHYT_RS14395 +0.6 3.4 sugar dehydratase compare
BPHYT_RS09755 +0.6 1.3 glycosyl transferase family 1 compare
BPHYT_RS07290 +0.6 2.5 hypothetical protein compare
BPHYT_RS14665 +0.6 2.0 hypothetical protein compare
BPHYT_RS29905 +0.6 1.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS07835 +0.6 1.0 muconolactone delta-isomerase compare
BPHYT_RS27425 +0.6 3.5 C4-dicarboxylate ABC transporter compare
BPHYT_RS20000 +0.6 1.0 serine/threonine protein kinase compare
BPHYT_RS06150 +0.6 2.5 aldehyde dehydrogenase compare
BPHYT_RS02040 +0.6 3.2 hypothetical protein compare
BPHYT_RS26155 +0.6 1.8 carboxylesterase compare
BPHYT_RS28660 +0.6 0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS00920 +0.5 1.3 transposase compare
BPHYT_RS23860 +0.5 1.7 malonic semialdehyde reductase compare
BPHYT_RS25285 +0.5 1.1 AraC family transcriptional regulator compare
BPHYT_RS27305 +0.5 1.5 hypothetical protein compare
BPHYT_RS15290 +0.5 2.0 tRNA-Arg compare
BPHYT_RS18930 +0.5 2.7 flagellar biosynthesis protein FlhG compare
BPHYT_RS22815 +0.5 1.4 TonB-denpendent receptor compare
BPHYT_RS34035 +0.5 1.6 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS33070 +0.5 1.5 haloacid dehalogenase compare
BPHYT_RS19005 +0.5 3.6 chemotaxis protein CheY compare
BPHYT_RS22940 +0.5 1.1 pilus assembly protein TadE compare
BPHYT_RS13515 +0.5 2.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS33890 +0.5 4.0 fimbrial protein FimV compare
BPHYT_RS10980 +0.5 1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS32595 +0.5 1.5 hypothetical protein compare
BPHYT_RS25000 +0.5 0.9 MFS transporter compare
BPHYT_RS11050 +0.5 1.1 molecular chaperone compare
BPHYT_RS13325 +0.5 1.4 TetR family transcriptional regulator compare
BPHYT_RS32240 +0.5 1.0 chromosome replication initiation inhibitor protein compare
BPHYT_RS35945 +0.5 1.4 response regulator receiver compare
BPHYT_RS15075 +0.5 1.4 dihydrokaempferol 4-reductase compare
BPHYT_RS05825 +0.5 1.3 hypothetical protein compare
BPHYT_RS20105 +0.5 2.1 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS05420 +0.5 1.4 glutathione S-transferase compare
BPHYT_RS10555 +0.5 2.2 integral membrane sensor hybrid histidine kinase compare
BPHYT_RS28360 +0.5 0.5 carboxymuconolactone decarboxylase compare
BPHYT_RS31130 +0.5 2.0 hypothetical protein compare
BPHYT_RS11640 +0.5 1.5 hypothetical protein compare
BPHYT_RS06730 +0.5 1.6 MaoC family dehydratase compare
BPHYT_RS16135 +0.5 3.0 ABC transporter ATP-binding protein compare
BPHYT_RS34305 +0.5 1.8 succinate-semialdehyde dehydrogenase compare
BPHYT_RS31930 +0.5 1.7 ATPase compare
BPHYT_RS33740 +0.5 1.6 hypothetical protein compare
BPHYT_RS03375 +0.5 1.1 NAD(P) transhydrogenase compare
BPHYT_RS09480 +0.5 0.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19010 +0.5 3.0 flagellar motor protein MotB compare
BPHYT_RS03155 +0.5 1.0 histidine triad (HIT) protein compare
BPHYT_RS30055 +0.5 1.7 hypothetical protein compare
BPHYT_RS05520 +0.5 1.5 transcriptional regulator compare
BPHYT_RS02300 +0.5 1.0 acid shock protein compare
BPHYT_RS33850 +0.5 0.9 sporulation protein compare
BPHYT_RS01505 +0.5 1.2 7-cyano-7-deazaguanine reductase compare
BPHYT_RS27560 +0.5 1.1 histidine kinase compare
BPHYT_RS04910 +0.5 1.0 phenylacetic acid degradation protein compare
BPHYT_RS27370 +0.5 1.3 CoA transferase compare
BPHYT_RS36415 +0.5 1.2 hypothetical protein compare
BPHYT_RS17805 +0.5 1.5 hypothetical protein compare
BPHYT_RS23255 +0.5 1.6 TetR family transcriptional regulator compare
BPHYT_RS28365 +0.5 1.0 Germin subfamily 1 member 15 compare
BPHYT_RS29810 +0.5 0.9 hexapeptide transferase compare
BPHYT_RS34665 +0.5 1.7 hypothetical protein compare
BPHYT_RS19945 +0.5 1.2 hypothetical protein compare
BPHYT_RS26490 +0.5 0.9 hypothetical protein compare
BPHYT_RS24210 +0.5 1.8 urea transporter compare
BPHYT_RS04095 +0.5 0.9 SAM-dependent methyltransferase PhcB compare
BPHYT_RS30020 +0.5 2.2 arsenic transporter compare
BPHYT_RS10140 +0.5 1.9 ABC transporter substrate-binding protein compare
BPHYT_RS10145 +0.5 2.3 Mn-containing catalase compare
BPHYT_RS01435 +0.5 4.4 LysR family transcriptional regulator compare
BPHYT_RS05810 +0.5 1.7 hypothetical protein compare
BPHYT_RS13835 +0.5 0.7 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS22885 +0.5 2.0 hypothetical protein compare
BPHYT_RS16090 +0.5 1.2 hypothetical protein compare
BPHYT_RS33630 +0.5 1.2 chromate transporter compare
BPHYT_RS23155 +0.5 0.8 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS30825 +0.5 0.7 extradiol dioxygenase compare
BPHYT_RS28740 +0.5 2.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS26050 +0.5 1.3 ABC transporter permease compare
BPHYT_RS25480 +0.5 1.8 hypothetical protein compare
BPHYT_RS35185 +0.5 2.2 DOPA 4,5-dioxygenase compare
BPHYT_RS15180 +0.5 3.3 membrane protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Ribose in Burkholderia phytofirmans PsJN

For carbon source D-Ribose across organisms