Experiment set1IT006 for Pseudomonas fluorescens FW300-N2E2

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D-Galactose carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_5976 -4.2 -5.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) conserved
Pf6N2E2_5978 -2.8 -7.9 Hexuronate transporter conserved
Pf6N2E2_5977 -2.5 -6.9 Galactonate dehydratase (EC 4.2.1.6) conserved
Pf6N2E2_5966 -2.4 -6.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf6N2E2_4485 -1.8 -7.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_2727 -1.8 -5.3 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_4581 -1.7 -6.5 FIG015547: peptidase, M16 family compare
Pf6N2E2_4580 -1.7 -5.8 FIG015287: Zinc protease compare
Pf6N2E2_5969 -1.6 -9.3 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf6N2E2_5025 -1.5 -11.4 Sensor histidine kinase compare
Pf6N2E2_4809 -1.5 -7.5 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_5970 -1.4 -5.0 ABC transporter for D-galactose/L-arabinose, permease component (from data) conserved
Pf6N2E2_5968 -1.3 -6.4 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf6N2E2_3692 -1.0 -5.4 Selenoprotein O and cysteine-containing homologs compare
Pf6N2E2_5388 +1.0 7.4 GDP-mannose 6-dehydrogenase (EC 1.1.1.132) compare
Pf6N2E2_3158 +1.1 7.0 tRNA (5-methoxyuridine) 34 synthase compare
Pf6N2E2_1915 +1.1 6.3 Dienelactone hydrolase and related enzymes compare
Pf6N2E2_2446 +1.1 7.4 Aspartate aminotransferase (EC 2.6.1.1) conserved
Pf6N2E2_4822 +1.1 6.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf6N2E2_4486 +1.2 6.2 Glycine cleavage system H protein compare
Pf6N2E2_168 +1.2 6.9 hypothetical protein compare
Pf6N2E2_2192 +1.2 7.6 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_5556 +1.2 5.1 Aminomethyltransferase (EC 2.1.2.10) (from data) compare
Pf6N2E2_3157 +1.3 6.0 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_4821 +1.3 5.6 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Pf6N2E2_5365 +1.3 5.9 Heavy metal sensor histidine kinase compare
Pf6N2E2_2167 +1.4 7.4 hypothetical protein compare
Pf6N2E2_4357 +1.4 10.6 Nucleoside-diphosphate-sugar epimerases compare
Pf6N2E2_2599 +1.4 7.2 Flagellar biosynthesis protein FliS compare
Pf6N2E2_5387 +1.4 10.3 Alginate biosynthesis protein Alg8 compare
Pf6N2E2_3081 +1.4 7.7 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_2166 +1.4 9.8 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_5386 +1.5 8.4 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_3903 +1.6 8.0 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_2533 +1.6 10.4 Rhodanese domain protein UPF0176 compare
Pf6N2E2_5435 +1.6 7.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3180 +1.6 7.2 Type IV pilus biogenesis protein PilF compare
Pf6N2E2_1386 +1.7 8.1 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_2466 +1.7 8.6 Universal stress protein family compare
Pf6N2E2_3560 +1.8 9.0 membrane protein, putative compare
Pf6N2E2_2524 +1.9 8.3 S-adenosylhomocysteine deaminase (EC 3.5.4.28); Methylthioadenosine deaminase compare
Pf6N2E2_806 +1.9 13.4 Multiple polyol-specific dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_4097 +1.9 14.5 FIG00953365: hypothetical protein compare
Pf6N2E2_2133 +1.9 11.2 Putative sulfate permease compare
Pf6N2E2_3517 +1.9 7.7 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_2044 +2.0 15.0 Histidine kinase/response regulator hybrid protein compare
Pf6N2E2_1916 +2.1 6.1 Transcriptional regulator, LysR family compare
Pf6N2E2_5448 +2.1 9.1 hypothetical protein compare
Pf6N2E2_529 +2.2 12.9 FIG00954439: hypothetical protein compare
Pf6N2E2_692 +2.2 11.8 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_2886 +2.2 17.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2699 +2.3 8.8 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2888 +2.3 15.5 Glucose-selective porin OprB compare
Pf6N2E2_4775 +2.4 9.5 Coenzyme PQQ synthesis protein B compare
Pf6N2E2_4774 +2.7 14.8 Pyrroloquinoline-quinone synthase (EC 1.3.3.11) compare
Pf6N2E2_694 +2.8 15.5 Outer membrane protein (porin) compare
Pf6N2E2_2470 +2.8 16.5 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf6N2E2_608 +2.9 13.3 Transcriptional regulator of the arabinose operon in Shewanella, GntR family compare
Pf6N2E2_4772 +3.2 23.0 Coenzyme PQQ synthesis protein E compare
Pf6N2E2_4980 +4.6 8.1 hypothetical protein compare


Specific phenotypes for carbon source D-Galactose across organisms