Experiment set1IT006 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4597 -6.2 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4596 -5.7 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4826 -5.5 -5.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_71 -5.5 -3.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5176 -5.4 -3.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_5006 -5.3 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_77 -5.3 -3.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5177 -5.3 -7.3 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3630 -4.9 -5.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3253 -4.9 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3783 -4.8 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5175 -4.8 -11.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4564 -4.7 -9.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_5780 -4.7 -6.4 Periplasmic protease compare
Pf6N2E2_4825 -4.7 -7.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_180 -4.7 -4.5 Transcriptional regulator, MerR family compare
Pf6N2E2_3782 -4.6 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3842 -4.5 -5.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_64 -4.5 -3.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3610 -4.2 -5.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5976 -4.2 -5.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) conserved
Pf6N2E2_5014 -4.2 -1.8 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4048 -4.2 -7.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_3839 -4.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4047 -4.0 -4.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3751 -3.9 -13.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3252 -3.8 -7.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3752 -3.8 -18.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_66 -3.7 -7.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5609 -3.6 -7.0 DNA-binding response regulator ColR compare
Pf6N2E2_3060 -3.6 -3.0 Outer membrane protein H precursor compare
Pf6N2E2_2088 -3.6 -2.1 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_2281 -3.6 -3.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_1381 -3.5 -7.0 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_4077 -3.5 -3.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3663 -3.5 -5.3 Glycosyl transferase compare
Pf6N2E2_2753 -3.4 -3.3 HtrA protease/chaperone protein compare
Pf6N2E2_2514 -3.4 -5.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5524 -3.3 -12.5 Outer membrane porin, OprD family compare
Pf6N2E2_3062 -3.3 -4.4 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3516 -3.2 -2.2 Probable transmembrane protein compare
Pf6N2E2_3257 -3.2 -3.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5316 -3.2 -2.2 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5720 -3.2 -11.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2507 -3.2 -6.5 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3841 -3.2 -6.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5156 -3.1 -2.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6057 -3.1 -3.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3661 -3.1 -4.2 hypothetical protein compare
Pf6N2E2_1083 -3.0 -2.5 hypothetical protein compare
Pf6N2E2_6082 -3.0 -4.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1932 -3.0 -5.4 Transcriptional regulator, IclR family compare
Pf6N2E2_2506 -3.0 -12.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5255 -3.0 -9.9 Outer membrane stress sensor protease DegS compare
Pf6N2E2_4206 -3.0 -2.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1402 -2.8 -6.3 hypothetical protein compare
Pf6N2E2_2181 -2.8 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3271 -2.8 -2.8 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3248 -2.8 -4.2 Probable transmembrane protein compare
Pf6N2E2_5978 -2.8 -7.9 Hexuronate transporter conserved
Pf6N2E2_3285 -2.8 -3.4 Rod shape-determining protein MreD compare
Pf6N2E2_2261 -2.7 -6.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2022 -2.7 -6.5 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5579 -2.7 -8.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_623 -2.6 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_4638 -2.6 -3.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2756 -2.6 -7.2 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3984 -2.5 -10.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5727 -2.5 -6.8 FIG00955360: hypothetical protein compare
Pf6N2E2_3258 -2.5 -4.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2752 -2.5 -7.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5977 -2.5 -6.9 Galactonate dehydratase (EC 4.2.1.6) conserved
Pf6N2E2_5001 -2.5 -2.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3659 -2.5 -5.1 Protein fixF compare
Pf6N2E2_613 -2.4 -1.8 lipoprotein, putative compare
Pf6N2E2_2508 -2.4 -3.6 hypothetical protein compare
Pf6N2E2_5966 -2.4 -6.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf6N2E2_3940 -2.4 -8.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4009 -2.3 -8.4 GGDEF domain protein compare
Pf6N2E2_1400 -2.3 -7.2 Sensory box histidine kinase/response regulator compare
Pf6N2E2_4478 -2.3 -7.1 FIG019278: hypothetical protein compare
Pf6N2E2_3835 -2.3 -3.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4759 -2.3 -11.2 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5219 -2.3 -7.2 FIG140336: TPR domain protein compare
Pf6N2E2_5523 -2.2 -4.3 Small-conductance mechanosensitive channel compare
Pf6N2E2_5965 -2.1 -3.3 transcriptional regulator compare
Pf6N2E2_5160 -2.1 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4059 -2.1 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_4611 -2.0 -3.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3658 -2.0 -6.2 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4584 -2.0 -3.0 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5610 -1.9 -5.8 two-component system sensor protein compare
Pf6N2E2_3170 -1.9 -4.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_6058 -1.9 -3.6 FIG139976: hypothetical protein compare
Pf6N2E2_2073 -1.9 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4485 -1.8 -7.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Pf6N2E2_5183 -1.8 -8.6 Paraquat-inducible protein B compare
Pf6N2E2_2438 -1.8 -1.7 hypothetical protein compare
Pf6N2E2_302 -1.8 -3.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5252 -1.8 -2.1 FIG00956396: hypothetical protein compare
Pf6N2E2_5841 -1.8 -1.3 GlcG protein compare
Pf6N2E2_2727 -1.8 -5.3 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_1450 -1.8 -2.1 FIG00960438: hypothetical protein compare
Pf6N2E2_5819 -1.7 -3.2 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf6N2E2_3613 -1.7 -4.7 GTP-binding protein HflX compare
Pf6N2E2_5181 -1.7 -7.8 Paraquat-inducible protein A compare
Pf6N2E2_5967 -1.7 -2.8 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_3260 -1.7 -3.7 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3727 -1.7 -2.0 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_2074 -1.7 -1.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3942 -1.7 -6.3 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3349 -1.7 -2.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_4581 -1.7 -6.5 FIG015547: peptidase, M16 family compare
Pf6N2E2_4423 -1.7 -2.0 FIG00953342: hypothetical protein compare
Pf6N2E2_5150 -1.7 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4580 -1.7 -5.8 FIG015287: Zinc protease compare
Pf6N2E2_4928 -1.7 -1.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_5975 -1.7 -3.1 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) compare
Pf6N2E2_2509 -1.6 -1.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_3664 -1.6 -6.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_4803 -1.6 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5969 -1.6 -9.3 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf6N2E2_4092 -1.6 -2.4 FIG00954395: hypothetical protein compare
Pf6N2E2_1056 -1.6 -0.9 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5531 -1.6 -3.7 hypothetical protein compare
Pf6N2E2_4810 -1.6 -3.8 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2200 -1.6 -1.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_658 -1.6 -7.1 sensor histidine kinase compare
Pf6N2E2_3460 -1.6 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4307 -1.6 -2.7 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_1448 -1.6 -3.0 hypothetical protein compare
Pf6N2E2_3093 -1.6 -3.4 Transcriptional regulator, TetR family compare
Pf6N2E2_3833 -1.6 -3.4 hypothetical protein compare
Pf6N2E2_5025 -1.5 -11.4 Sensor histidine kinase compare
Pf6N2E2_1173 -1.5 -2.1 hypothetical protein compare
Pf6N2E2_5312 -1.5 -1.0 FIG00964214: hypothetical protein compare
Pf6N2E2_3932 -1.5 -1.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_3480 -1.5 -1.3 Transcriptional regulator, ArsR family compare
Pf6N2E2_4809 -1.5 -7.5 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_5328 -1.5 -2.7 FIG00958649: hypothetical protein compare
Pf6N2E2_5492 -1.5 -4.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Pf6N2E2_146 -1.5 -1.0 Transcriptional regulator, MarR family compare
Pf6N2E2_5553 -1.5 -4.9 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2574 -1.4 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5899 -1.4 -5.5 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1371 -1.4 -3.0 hypothetical protein compare
Pf6N2E2_5510 -1.4 -2.3 FIG00955324: hypothetical protein compare
Pf6N2E2_3346 -1.4 -3.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_1611 -1.4 -4.0 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_2934 -1.4 -2.8 lipoprotein, putative compare
Pf6N2E2_89 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_6064 -1.4 -4.0 2-methylaconitate isomerase compare
Pf6N2E2_4392 -1.4 -2.0 Translation initiation inhibitor compare
Pf6N2E2_5943 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_5970 -1.4 -5.0 ABC transporter for D-galactose/L-arabinose, permease component (from data) conserved
Pf6N2E2_1403 -1.4 -2.1 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_5567 -1.4 -2.4 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_4279 -1.3 -6.4 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_282 -1.3 -1.5 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4160 -1.3 -1.1 Cytochrome c5 compare
Pf6N2E2_3461 -1.3 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1848 -1.3 -3.0 hypothetical protein compare
Pf6N2E2_4838 -1.3 -6.2 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_4362 -1.3 -1.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2985 -1.3 -2.3 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_3171 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_3617 -1.3 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_775 -1.3 -2.4 FIG00955061: hypothetical protein compare
Pf6N2E2_4204 -1.3 -1.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5968 -1.3 -6.4 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf6N2E2_1298 -1.3 -3.1 Xanthine transporter,putative compare
Pf6N2E2_2526 -1.3 -3.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_309 -1.2 -0.7 FIG00957702: hypothetical protein compare
Pf6N2E2_6038 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_659 -1.2 -1.8 Transcriptional regulatory protein ompR compare
Pf6N2E2_1294 -1.2 -1.2 Carbon starvation protein A compare
Pf6N2E2_1211 -1.2 -1.2 Lactoylglutathione lyase compare
Pf6N2E2_2441 -1.2 -2.9 putative ATP/GTP-binding protein compare
Pf6N2E2_2871 -1.2 -2.1 FIG00954271: hypothetical protein compare
Pf6N2E2_6140 -1.2 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3834 -1.2 -2.8 Lipoprotein NlpD compare
Pf6N2E2_2217 -1.2 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4278 -1.2 -6.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_1124 -1.2 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2124 -1.2 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_4352 -1.2 -1.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3027 -1.2 -1.1 Baseplate assembly protein V compare
Pf6N2E2_1876 -1.1 -1.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_5453 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_5794 -1.1 -1.1 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5128 -1.1 -2.4 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_4556 -1.1 -2.5 FIG00953078: hypothetical protein compare
Pf6N2E2_6059 -1.1 -2.6 FIG008443: hypothetical protein compare
Pf6N2E2_4359 -1.1 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2178 -1.1 -4.2 FIG00960144: hypothetical protein compare
Pf6N2E2_4562 -1.1 -2.2 L-cystine uptake protein TcyP compare
Pf6N2E2_3037 -1.1 -5.1 RNA polymerase sigma factor RpoS compare
Pf6N2E2_5894 -1.1 -4.2 Putative threonine efflux protein compare
Pf6N2E2_3219 -1.1 -1.8 hypothetical protein compare
Pf6N2E2_664 -1.1 -1.3 Acetoin catabolism protein X compare


Specific Phenotypes

For 60 genes in this experiment

For carbon source D-Galactose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Galactose across organisms