Experiment set1IT006 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_20280 -5.9 -4.0 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) conserved
AO356_14435 -5.6 -3.9 anthranilate phosphoribosyltransferase compare
AO356_21440 -5.2 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_20285 -5.1 -4.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
AO356_08635 -4.8 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
AO356_09525 -4.7 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14420 -4.6 -13.8 anthranilate synthase compare
AO356_21415 -4.5 -12.0 3-isopropylmalate dehydrogenase compare
AO356_16075 -4.5 -3.1 Fis family transcriptional regulator compare
AO356_13405 -4.4 -9.8 methionine biosynthesis protein MetW compare
AO356_21405 -4.4 -5.2 3-isopropylmalate dehydratase compare
AO356_00555 -4.4 -10.9 sulfite reductase compare
AO356_13410 -4.4 -12.0 homoserine O-acetyltransferase compare
AO356_12525 -4.4 -8.9 acetylglutamate kinase compare
AO356_20290 -4.3 -10.8 galactonate dehydratase conserved
AO356_22200 -4.3 -8.2 sirohydrochlorin ferrochelatase compare
AO356_06970 -4.3 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_14440 -4.3 -5.8 indole-3-glycerol-phosphate synthase compare
AO356_06965 -4.2 -8.8 histidinol dehydrogenase compare
AO356_09815 -4.2 -5.7 imidazoleglycerol-phosphate dehydratase compare
AO356_09375 -4.1 -22.8 glutamate synthase compare
AO356_21400 -4.1 -8.1 isopropylmalate isomerase compare
AO356_16170 -4.0 -10.6 acetolactate synthase 3 catalytic subunit compare
AO356_13085 -4.0 -10.3 N-acetylglutamate synthase compare
AO356_08735 -4.0 -13.7 phosphoserine phosphatase compare
AO356_16175 -3.9 -8.0 acetolactate synthase 3 regulatory subunit compare
AO356_09810 -3.9 -3.8 imidazole glycerol phosphate synthase subunit HisH compare
AO356_10915 -3.9 -8.2 tryptophan synthase subunit beta compare
AO356_18325 -3.9 -12.2 argininosuccinate synthase compare
AO356_18275 -3.9 -13.6 ornithine carbamoyltransferase compare
AO356_09520 -3.9 -5.3 phosphoribosyl-AMP cyclohydrolase compare
AO356_10000 -3.8 -5.8 hypothetical protein compare
AO356_15165 -3.8 -2.6 protein cII compare
AO356_16180 -3.8 -15.3 ketol-acid reductoisomerase compare
AO356_10910 -3.7 -9.0 tryptophan synthase subunit alpha compare
AO356_06550 -3.7 -10.5 2-isopropylmalate synthase compare
AO356_13605 -3.7 -9.4 5,10-methylenetetrahydrofolate reductase compare
AO356_14430 -3.6 -7.0 anthranilate synthase compare
AO356_12520 -3.6 -2.4 orotate phosphoribosyltransferase compare
AO356_21465 -3.5 -4.8 amidophosphoribosyltransferase compare
AO356_09800 -3.5 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_00880 -3.4 -3.9 integration host factor subunit alpha compare
AO356_16870 -3.3 -14.0 benzoate transporter compare
AO356_21470 -3.2 -9.1 O-succinylhomoserine sulfhydrylase compare
AO356_00560 -3.2 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_09370 -3.2 -10.7 glutamate synthase compare
AO356_17520 -3.2 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_19795 -3.1 -3.6 glycerol-3-phosphate dehydrogenase compare
AO356_13250 -3.1 -9.2 dihydroxy-acid dehydratase compare
AO356_01745 -2.9 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_12780 -2.8 -7.6 argininosuccinate lyase compare
AO356_10300 -2.8 -4.3 3-phosphoglycerate dehydrogenase compare
AO356_08905 -2.8 -3.6 glycosyl transferase compare
AO356_05180 -2.7 -7.3 sugar ABC transporter ATP-binding protein compare
AO356_19090 -2.7 -2.6 phosphoribosylaminoimidazole synthetase compare
AO356_16095 -2.7 -9.9 molecular chaperone DnaK compare
AO356_07480 -2.6 -3.0 carbamoyl phosphate synthase large subunit compare
AO356_08235 -2.6 -8.9 histidine kinase compare
AO356_04560 -2.6 -2.5 serine peptidase compare
AO356_24845 -2.6 -3.4 ATPase compare
AO356_06575 -2.6 -3.4 outer membrane protein assembly factor BamB compare
AO356_10005 -2.6 -8.4 branched-chain amino acid permease (azaleucine resistance) compare
AO356_10340 -2.5 -12.8 phosphoserine phosphatase compare
AO356_20235 -2.5 -13.1 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) (from data) conserved
AO356_12025 -2.4 -13.3 pyruvate carboxylase subunit B compare
AO356_12020 -2.4 -12.3 pyruvate carboxylase subunit A compare
AO356_05210 -2.4 -4.1 chemotaxis protein CheY compare
AO356_05205 -2.4 -8.3 histidine kinase compare
AO356_05190 -2.3 -15.0 sugar ABC transporter permease compare
AO356_05195 -2.3 -10.7 sugar ABC transporter substrate-binding protein compare
AO356_07915 -2.3 -2.7 exodeoxyribonuclease V subunit beta compare
AO356_18730 -2.3 -9.5 arginine N-succinyltransferase compare
AO356_19085 -2.3 -8.6 phosphoribosylglycinamide formyltransferase compare
AO356_08660 -2.2 -8.0 tRNA dimethylallyltransferase compare
AO356_06685 -2.2 -2.1 preprotein translocase subunit YajC compare
AO356_10880 -2.2 -1.6 hypothetical protein compare
AO356_20475 -2.2 -2.8 hypothetical protein compare
AO356_01750 -2.1 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_11315 -2.1 -1.4 shikimate dehydrogenase compare
AO356_05185 -2.1 -8.2 sugar ABC transporter permease compare
AO356_22795 -2.0 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_19045 -2.0 -11.5 chemotaxis protein CheY compare
AO356_18415 -2.0 -10.1 XRE family transcriptional regulator compare
AO356_03350 -2.0 -7.1 glycosyl transferase compare
AO356_15815 -2.0 -2.3 gamma-glutamyl kinase compare
AO356_09995 -2.0 -8.1 LysR family transcriptional regulator compare
AO356_11450 -2.0 -1.8 cytochrome C compare
AO356_27215 -1.9 -3.7 hypothetical protein compare
AO356_27250 -1.9 -6.7 hypothetical protein compare
AO356_18805 -1.9 -1.8 magnesium transporter compare
AO356_10920 -1.9 -7.6 LysR family transcriptional regulator compare
AO356_19050 -1.8 -2.9 cysteine synthase compare
AO356_11610 -1.8 -2.1 glycerol acyltransferase compare
AO356_07020 -1.8 -2.0 LPS export ABC transporter periplasmic protein LptC compare
AO356_00355 -1.8 -7.3 chemotaxis protein CheY compare
AO356_05995 -1.8 -1.9 hypothetical protein compare
AO356_16050 -1.8 -2.8 glucose-6-phosphate isomerase compare
AO356_07000 -1.8 -3.7 ABC transporter permease compare
AO356_02315 -1.8 -4.4 DNA topoisomerase I compare
AO356_12375 -1.8 -9.8 histidine kinase compare
AO356_11680 -1.7 -2.9 chromosome partitioning protein ParB compare
AO356_17075 -1.7 -1.6 cytochrome C compare
AO356_14295 -1.7 -2.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_10350 -1.7 -10.3 phosphoenolpyruvate-protein phosphotransferase compare
AO356_18025 -1.7 -2.6 ATP-dependent DNA helicase RuvB compare
AO356_19520 -1.6 -4.0 isochorismatase compare
AO356_08895 -1.6 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_15325 -1.6 -2.8 hypothetical protein compare
AO356_27210 -1.6 -7.3 hypothetical protein compare
AO356_18020 -1.5 -3.4 ATP-dependent DNA helicase RuvA compare
AO356_30345 -1.5 -4.7 IclR family transcriptional regulator compare
AO356_27230 -1.5 -5.0 hypothetical protein compare
AO356_16955 -1.5 -5.2 disulfide bond formation protein B compare
AO356_05735 -1.5 -1.7 hypothetical protein compare
AO356_03405 -1.5 -3.6 serine acetyltransferase compare
AO356_16080 -1.4 -8.1 ATPase compare
AO356_03810 -1.4 -3.8 anti-anti-sigma factor compare
AO356_20295 -1.4 -6.2 glucarate transporter conserved
AO356_17065 -1.4 -0.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_10075 -1.4 -5.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_27205 -1.4 -6.2 hypothetical protein compare
AO356_17950 -1.4 -6.6 histidine kinase compare
AO356_17070 -1.4 -1.3 cytochrome B compare
AO356_03180 -1.4 -4.3 CysB family transcriptional regulator compare
AO356_20245 -1.4 -8.0 sugar ABC transporter substrate-binding protein conserved
AO356_14395 -1.4 -10.0 polyamine ABC transporter substrate-binding protein compare
AO356_03070 -1.3 -8.3 histidine kinase compare
AO356_07920 -1.3 -4.7 exodeoxyribonuclease V subunit gamma compare
AO356_16665 -1.3 -7.7 sulfate adenylyltransferase compare
AO356_21260 -1.3 -2.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_06995 -1.3 -4.9 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_18735 -1.2 -4.3 arginine N-succinyltransferase compare
AO356_12015 -1.2 -6.3 LysR family transcriptional regulator compare
AO356_14400 -1.2 -5.0 polyamine ABC transporter permease compare
AO356_23250 -1.2 -3.3 hypothetical protein compare
AO356_07005 -1.2 -2.0 ABC transporter ATP-binding protein compare
AO356_20255 -1.2 -5.9 arabinose ABC transporter permease conserved
AO356_21330 -1.2 -6.8 aromatic amino acid aminotransferase compare
AO356_12610 -1.2 -2.0 Fe-S oxidoreductase compare
AO356_03800 -1.2 -1.8 histidine kinase compare
AO356_02580 -1.2 -2.7 GntR family transcriptional regulator compare
AO356_20250 -1.2 -8.7 L-arabinose transporter ATP-binding protein conserved
AO356_07495 -1.2 -2.9 molecular chaperone DnaJ compare
AO356_12640 -1.2 -2.1 cytochrome C compare
AO356_12730 -1.2 -3.2 hypothetical protein compare
AO356_02190 -1.1 -5.0 hypothetical protein compare
AO356_07385 -1.1 -1.4 tRNA-Thr compare
AO356_03400 -1.1 -4.4 aminotransferase DegT compare
AO356_28825 -1.1 -2.7 histidine kinase compare
AO356_17890 -1.1 -2.1 H-NS histone compare
AO356_12380 -1.1 -4.5 ATP-dependent DNA helicase RecG compare
AO356_11025 -1.1 -3.8 transcriptional regulator PhoU compare
AO356_09795 -1.1 -1.2 imidazole glycerol phosphate synthase subunit HisF compare
AO356_26630 -1.1 -2.6 XshC-Cox1 family protein compare
AO356_10330 -1.1 -7.7 threonine dehydratase compare
AO356_27240 -1.1 -3.3 hypothetical protein compare
AO356_28440 -1.1 -1.6 galactose 1-dehydrogenase compare
AO356_15690 -1.1 -2.1 carbon starvation protein A compare
AO356_20830 -1.1 -2.3 phosphoadenosine phosphosulfate reductase compare
AO356_19420 -1.1 -1.5 septum formation inhibitor compare
AO356_20175 -1.1 -1.1 3-oxoacyl-ACP synthase compare
AO356_20785 -1.0 -1.6 hypothetical protein compare
AO356_27180 -1.0 -2.5 hypothetical protein compare
AO356_03420 -1.0 -5.1 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_03715 -1.0 -6.0 chemotaxis protein CheA compare
AO356_25750 -1.0 -2.5 GntR family transcriptional regulator compare
AO356_27995 -1.0 -1.6 thioredoxin reductase compare
AO356_12925 -1.0 -1.6 GntR family transcriptional regulator compare
AO356_06990 -1.0 -3.5 toluene tolerance protein compare
AO356_02440 -1.0 -5.2 cytochrome C oxidase Cbb3 compare
AO356_14335 -1.0 -2.4 rRNA methyltransferase compare
AO356_03725 -1.0 -1.4 histidine kinase compare
AO356_19565 -1.0 -1.8 hypothetical protein compare
AO356_11465 -1.0 -5.4 DNA polymerase I compare
AO356_12990 -1.0 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
AO356_16670 -1.0 -6.7 adenylylsulfate kinase compare
AO356_10015 -1.0 -6.7 protein BsmA compare
AO356_03620 -1.0 -1.8 cytochrome C compare
AO356_17970 -1.0 -7.5 porin compare
AO356_04055 -0.9 -1.9 hypothetical protein compare
AO356_16850 -0.9 -5.8 serine hydroxymethyltransferase compare
AO356_01245 -0.9 -5.2 glycogen branching protein compare
AO356_07105 -0.9 -4.0 hypothetical protein compare
AO356_02460 -0.9 -1.0 hypothetical protein compare
AO356_10010 -0.9 -2.6 GCN5 family acetyltransferase compare
AO356_09640 -0.9 -3.1 histidine utilization repressor compare
AO356_06005 -0.9 -2.8 zinc metallopeptidase RseP compare
AO356_03415 -0.9 -4.9 oxidoreductase compare
AO356_03135 -0.9 -5.3 LysR family transcriptional regulator compare
AO356_28695 -0.9 -1.3 IclR family transcriptional regulator compare
AO356_06105 -0.9 -1.4 cold-shock protein compare
AO356_12900 -0.9 -2.5 exopolyphosphatase compare
AO356_03360 -0.9 -1.6 hypothetical protein compare
AO356_02175 -0.9 -4.7 transaldolase compare
AO356_08880 -0.9 -3.5 glycosyl transferase compare
AO356_19730 -0.9 -1.3 hypothetical protein compare
AO356_17985 -0.9 -3.6 cold-shock protein compare
AO356_02465 -0.9 -1.0 carbonate dehydratase compare
AO356_12725 -0.8 -2.7 recombinase XerC compare
AO356_29540 -0.8 -2.2 transcriptional regulator compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Galactose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Galactose across organisms