Experiment set1IT006 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_15 -4.1 -2.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.6 -10.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1307 -3.4 -2.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1624 -3.4 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_6 -3.4 -5.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1067 -3.4 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_1146 -3.3 -7.1 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) conserved
Pf1N1B4_1831 -3.3 -10.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -3.2 -13.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1534 -3.2 -16.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1408 -3.1 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1434 -3.1 -7.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1830 -3.0 -7.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2272 -3.0 -3.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2545 -3.0 -12.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2548 -2.9 -6.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2010 -2.9 -5.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2547 -2.9 -2.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2009 -2.9 -4.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1565 -2.8 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_742 -2.8 -7.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2878 -2.7 -6.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1315 -2.7 -7.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_847 -2.7 -9.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1627 -2.7 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1533 -2.7 -8.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2282 -2.6 -8.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2338 -2.6 -7.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1144 -2.6 -9.0 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) conserved
Pf1N1B4_2384 -2.6 -9.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_5311 -2.6 -2.8 hypothetical protein compare
Pf1N1B4_2337 -2.6 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3328 -2.5 -2.9 Rhodanese-like domain protein compare
Pf1N1B4_2850 -2.5 -6.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_762 -2.5 -5.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4931 -2.4 -2.8 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_58 -2.4 -6.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1617 -2.4 -7.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2549 -2.4 -8.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2879 -2.4 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3812 -2.3 -7.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_327 -2.3 -2.6 hypothetical protein compare
Pf1N1B4_1626 -2.3 -6.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_5665 -2.3 -4.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2011 -2.3 -7.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2858 -2.2 -10.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_350 -2.1 -6.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_3038 -2.1 -5.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4065 -2.1 -6.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_5666 -2.1 -3.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_652 -2.0 -7.6 Sensory box histidine kinase compare
Pf1N1B4_769 -2.0 -5.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1668 -2.0 -5.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_12 -2.0 -6.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_3506 -2.0 -6.4 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1906 -2.0 -3.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_257 -2.0 -5.7 sensor histidine kinase/response regulator compare
Pf1N1B4_2487 -1.9 -7.4 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3081 -1.9 -14.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3697 -1.8 -6.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2401 -1.7 -2.3 Lipoprotein, putative compare
Pf1N1B4_3909 -1.7 -2.7 Cell division inhibitor-related protein compare
Pf1N1B4_3241 -1.7 -2.2 hypothetical protein compare
Pf1N1B4_3518 -1.6 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2360 -1.6 -2.1 hypothetical protein compare
Pf1N1B4_715 -1.6 -4.6 Iron-regulated protein A precursor compare
Pf1N1B4_1153 -1.5 -2.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_2280 -1.5 -6.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_718 -1.5 -5.6 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_2949 -1.5 -2.0 FIG00956396: hypothetical protein compare
Pf1N1B4_3849 -1.5 -3.6 Transcriptional regulator, GntR family compare
Pf1N1B4_4494 -1.4 -2.4 hypothetical protein compare
Pf1N1B4_1535 -1.4 -2.9 hypothetical protein compare
Pf1N1B4_1566 -1.4 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3799 -1.4 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_2706 -1.4 -2.7 FIG00954871: hypothetical protein compare
Pf1N1B4_1317 -1.4 -2.6 Sensor histidine kinase/response regulator compare
Pf1N1B4_2856 -1.4 -3.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_717 -1.4 -5.3 Iron-regulated protein A precursor compare
Pf1N1B4_1782 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_1593 -1.4 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4027 -1.3 -1.8 hypothetical protein compare
Pf1N1B4_2491 -1.3 -3.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_5512 -1.3 -1.9 hypothetical protein compare
Pf1N1B4_412 -1.3 -2.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3715 -1.3 -3.7 Cobalamin synthase compare
Pf1N1B4_4035 -1.3 -2.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_958 -1.3 -2.3 Stringent starvation protein B compare
Pf1N1B4_1625 -1.3 -2.8 FIG00956267: hypothetical protein compare
Pf1N1B4_3751 -1.2 -1.9 FIG00953060: hypothetical protein compare
Pf1N1B4_4473 -1.2 -1.8 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2071 -1.2 -1.8 Protein phosphatase ImpM compare
Pf1N1B4_1057 -1.2 -2.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_4166 -1.2 -2.2 Transcriptional regulator, LysR family compare
Pf1N1B4_4921 -1.2 -2.0 Haloacid dehalogenase, type II compare
Pf1N1B4_616 -1.2 -2.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4029 -1.2 -2.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_63 -1.2 -2.1 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_3613 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_1993 -1.2 -1.5 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_1653 -1.2 -5.0 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2488 -1.2 -5.1 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_716 -1.2 -2.9 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_1113 -1.2 -3.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_419 -1.1 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_2859 -1.1 -8.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4041 -1.1 -2.6 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_4386 -1.1 -2.6 Inositol transport system sugar-binding protein compare
Pf1N1B4_2465 -1.1 -1.9 Two-component response regulator CreB compare
Pf1N1B4_4533 -1.1 -1.5 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_3222 -1.1 -1.6 Ferredoxin compare
Pf1N1B4_4336 -1.1 -2.2 FMN-dependent NADH-azoreductase compare
Pf1N1B4_2105 -1.0 -1.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_2366 -1.0 -2.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_3368 -1.0 -1.6 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_602 -1.0 -2.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_4299 -1.0 -2.2 sensor histidine kinase compare
Pf1N1B4_138 -1.0 -1.8 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_2005 -1.0 -1.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_5330 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_1614 -1.0 -1.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_2178 -1.0 -1.2 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_4849 -1.0 -1.7 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_4939 -1.0 -2.4 sodium/hydrogen exchanger family protein compare
Pf1N1B4_1613 -1.0 -1.2 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_2869 -0.9 -3.0 lipoprotein, putative compare
Pf1N1B4_2486 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_4661 -0.9 -2.0 Cell division inhibitor SULA compare
Pf1N1B4_5371 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_4393 -0.9 -1.7 Ferredoxin reductase compare
Pf1N1B4_5706 -0.9 -2.5 Fumarylacetoacetate hydrolase family protein compare
Pf1N1B4_866 -0.9 -1.5 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_81 -0.9 -1.8 Putative sulfate permease compare
Pf1N1B4_5476 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_5829 -0.9 -1.5 FIG005107: hypothetical protein compare
Pf1N1B4_3531 -0.9 -1.4 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4640 -0.9 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_693 -0.9 -2.2 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_1328 -0.9 -1.6 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_1403 -0.9 -4.2 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_522 -0.9 -1.7 HlyD family secretion protein compare
Pf1N1B4_691 -0.9 -1.8 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_2037 -0.9 -2.0 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf1N1B4_381 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_3906 -0.9 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2225 -0.9 -5.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_5446 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_197 -0.9 -1.7 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_1851 -0.9 -3.5 FIG00953365: hypothetical protein compare
Pf1N1B4_4481 -0.9 -1.6 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf1N1B4_4678 -0.9 -2.6 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_4729 -0.9 -1.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_4831 -0.8 -1.5 Outer membrane protein assembly factor YaeT precursor compare
Pf1N1B4_2329 -0.8 -2.7 COG2363 compare
Pf1N1B4_5833 -0.8 -1.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_2171 -0.8 -2.2 Tyrosine recombinase XerC compare
Pf1N1B4_2377 -0.8 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4695 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_2400 -0.8 -1.4 FIG00955006: hypothetical protein compare
Pf1N1B4_4276 -0.8 -3.1 5-deoxy-glucuronate isomerase (EC 5.3.1.-) compare
Pf1N1B4_4596 -0.8 -1.9 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_348 -0.8 -2.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2209 -0.8 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2322 -0.8 -1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_27 -0.8 -2.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_3352 -0.8 -2.1 tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) compare
Pf1N1B4_2114 -0.8 -3.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3983 -0.8 -1.7 cI compare
Pf1N1B4_5906 -0.8 -1.5 Esterase/lipase compare
Pf1N1B4_1590 -0.8 -3.0 Histidine utilization repressor compare
Pf1N1B4_5014 -0.8 -1.5 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_3027 -0.8 -2.5 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_899 -0.8 -1.2 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_2640 -0.8 -2.0 FIG003461: hypothetical protein compare
Pf1N1B4_4879 -0.8 -1.6 Chromosome segregation ATPases compare
Pf1N1B4_4328 -0.8 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_2664 -0.8 -2.6 Fic family protein compare
Pf1N1B4_236 -0.8 -1.5 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_644 -0.8 -1.1 Cold shock protein CspC compare
Pf1N1B4_3305 -0.8 -1.7 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_1040 -0.7 -2.6 FolM Alternative dihydrofolate reductase 1 compare
Pf1N1B4_2958 -0.7 -1.5 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_5136 -0.7 -3.4 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_1451 -0.7 -2.1 Ethidium bromide-methyl viologen resistance protein EmrE compare
Pf1N1B4_5507 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_835 -0.7 -1.6 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_4666 -0.7 -2.4 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_309 -0.7 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3935 -0.7 -1.9 Major facilitator family transporter compare
Pf1N1B4_3509 -0.7 -2.9 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
Pf1N1B4_1770 -0.7 -2.0 Uncharacterized protein, possibly involved in aromatic compounds catabolism compare
Pf1N1B4_1568 -0.7 -1.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_582 -0.7 -2.4 FIG00959696: hypothetical protein compare
Pf1N1B4_4632 -0.7 -1.6 Exonuclease SbcC compare
Pf1N1B4_1874 -0.7 -1.7 FIG00953549: hypothetical protein compare
Pf1N1B4_4038 -0.7 -1.2 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4297 -0.7 -1.6 FIG00966599: hypothetical protein compare
Pf1N1B4_5498 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_69 -0.7 -1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_749 -0.7 -1.3 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Fructose in Pseudomonas fluorescens FW300-N1B4

For carbon source D-Fructose across organisms