Experiment set1IT006 for Caulobacter crescentus NA1000

Compare to:

a-Cyclodextrin carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00684 +4.4 18.7 anti-sigma factor, ChrR-family compare
CCNA_01851 +4.4 31.3 quinol cytochrome oxidase polypeptide II compare
CCNA_01979 +3.9 22.0 LexA repressor compare
CCNA_00264 +3.9 23.2 C4-dicarboxylate transport protein compare
CCNA_01848 +3.8 17.5 quinol cytochrome oxidase polypeptide IV compare
CCNA_01712 +3.7 27.5 CopY/TcrY family transcriptional repressor compare
CCNA_01849 +3.7 17.1 quinol cytochrome oxidase polypeptide III compare
CCNA_01850 +3.6 23.7 quinol cytochrome oxidase polypeptide I compare
CCNA_02367 +3.6 24.0 CelR-family transcriptional regulator compare
CCNA_00162 +3.6 12.2 hypothetical protein compare
CCNA_02103 +3.5 13.1 hypothetical protein compare
CCNA_01593 +3.4 19.1 Xaa-pro aminopeptidase compare
CCNA_02957 +3.4 7.8 ArsR-family transcriptional regulator compare
CCNA_03064 +3.3 17.0 PadR-family transcriptional regulator compare
CCNA_02646 +3.3 4.9 cell division protein MraZ compare
CCNA_01840 +3.3 22.6 MerR-family transcriptional regulator compare
CCNA_01059 +3.3 28.0 S-layer protein rsaA compare
CCNA_01220 +3.3 8.4 7-keto-8-aminopelargonate synthetase compare
CCNA_03524 +3.2 18.9 di-/tripeptide transporter compare
CCNA_01780 +3.2 20.5 exopolyphosphatase compare
CCNA_02448 +3.1 14.5 hypothetical protein compare
CCNA_03612 +3.1 12.7 HTH XRE-family transcriptional regulator compare
CCNA_03287 +3.1 18.1 PadR-family transcriptional regulator compare
CCNA_03252 +3.1 21.7 CopY/TcrY-family transcriptional regulator compare
CCNA_00296 +3.0 14.5 phosphate regulon response regulator PhoB compare
CCNA_02447 +3.0 15.3 PspA/IM30 family regulatory protein compare
CCNA_03030 +3.0 15.6 cytochrome c2 compare
CCNA_01684 +3.0 13.3 phenylalanine-4-hydroxylase compare
CCNA_00699 +3.0 10.9 LSU ribosomal protein L28P compare
CCNA_03012 +3.0 14.7 peroxiredoxin compare
CCNA_01573 +3.0 13.6 ArsR-family transcriptional regulator compare
CCNA_02387 +2.9 20.3 glutathione reductase compare
CCNA_00846 +2.9 22.2 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03951 +2.9 10.3 hypothetical protein compare
CCNA_00161 +2.9 17.9 hypothetical protein compare
CCNA_01094 +2.9 5.7 hypothetical protein compare
CCNA_02000 +2.9 3.0 SSU ribosomal protein S2P compare
CCNA_03289 +2.9 14.6 HicB-family RNA-binding protein compare
CCNA_01525 +2.9 11.6 flagellar biosynthesis repressor flbT compare
CCNA_01931 +2.9 14.5 TetR-family transcriptional regulator compare
CCNA_02021 +2.9 8.0 hypothetical protein compare
CCNA_02980 +2.9 17.7 tryptophan 2,3-dioxygenase compare
CCNA_03271 +2.8 18.0 methionine gamma-lyase compare
CCNA_00518 +2.8 18.2 LSU ribosomal protein L25P compare
CCNA_03280 +2.8 22.3 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02591 +2.8 10.2 glutaredoxin compare
CCNA_03479 +2.8 12.9 MarR-family transcriptional regulator compare
CCNA_01526 +2.8 8.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_00028 +2.8 8.7 TonB-dependent receptor compare
CCNA_03519 +2.8 8.2 PadR-family transcriptional regulator compare
CCNA_02287 +2.8 12.7 TetR-family transcriptional regulator compare
CCNA_02004 +2.8 4.5 SOS-induced inhibitor of cell division SidA compare
CCNA_02619 +2.7 19.7 stomatin/prohibitin-related protein compare
CCNA_03989 +2.7 19.1 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03689 +2.7 16.2 alanine dehydrogenase compare
CCNA_01804 +2.7 13.6 glutathione peroxidase compare
CCNA_02416 +2.7 12.2 DNA-binding protein HU compare
CCNA_02025 +2.7 5.6 hypothetical protein compare
CCNA_03863 +2.7 5.8 hypothetical protein compare
CCNA_01801 +2.7 9.3 hypothetical protein compare
CCNA_01913 +2.7 15.3 MarR-family transcriptional regulator compare
CCNA_03043 +2.6 8.0 type IV pilin protein pilA compare
CCNA_01847 +2.6 15.4 cytochrome c oxidase assembly protein Surf1 compare
CCNA_03325 +2.6 8.3 hypothetical protein compare
CCNA_03961 +2.6 8.6 hypothetical protein compare
CCNA_02616 +2.6 15.0 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01681 +2.6 7.3 RimI-like acetyltransferase compare
CCNA_02617 +2.6 17.5 histidinol-phosphate aminotransferase compare
CCNA_00505 +2.5 10.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02026 +2.5 5.2 hypothetical protein compare
CCNA_03123 +2.5 13.4 ArsR-family transcriptional regulator compare
CCNA_00362 +2.5 5.0 zinc uptake regulation protein compare
CCNA_03062 +2.5 11.5 cell wall hydrolase family protein compare
CCNA_R0037 +2.5 6.9 tRNA-Glu compare
CCNA_01763 +2.5 14.9 multifunctional aminopeptidase compare
CCNA_01742 +2.5 9.6 hypothetical protein compare
CCNA_00447 +2.5 10.0 chemotaxis protein cheD compare
CCNA_00847 +2.5 10.6 leucine-responsive regulatory protein compare
CCNA_03391 +2.4 11.7 Cro/CI family transcriptional regulator compare
CCNA_01453 +2.4 6.2 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_00163 +2.4 12.5 exopolysaccharide transport family protein compare
CCNA_00939 +2.4 7.6 MarR-family transcriptional regulator compare
CCNA_00168 +2.4 14.1 polysaccharide export protein compare
CCNA_01964 +2.4 6.8 NADH dehydrogenase compare
CCNA_00756 +2.4 3.9 hypothetical protein compare
CCNA_01420 +2.4 9.3 NrdR family transcriptional regulator compare
CCNA_02379 +2.4 12.2 hypothetical protein compare
CCNA_03740 +2.4 9.7 cysteine synthase compare
CCNA_01926 +2.4 9.9 GGDEF diguanylate cyclase DgcB compare
CCNA_01541 +2.4 14.8 LysR-family transcriptional regulator compare
CCNA_01942 +2.4 7.6 Rrf2 family protein compare
CCNA_03379 +2.4 3.9 Cro/CI family transcriptional regulator compare
CCNA_01790 +2.3 6.8 protein translocase subunit secG compare
CCNA_02289 +2.3 13.8 MarR/EmrR family transcriptional regulator compare
CCNA_01528 +2.3 11.3 flagellin fljK compare
CCNA_01186 +2.3 8.7 hypothetical protein compare
CCNA_02297 +2.3 8.7 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_03805 +2.3 12.6 PadR-family transcriptional regulator compare
CCNA_03964 +2.3 4.4 hypothetical protein compare
CCNA_01968 +2.3 5.8 pentapeptide repeats containing protein compare
CCNA_01680 +2.3 11.0 succinylarginine dihydrolase compare
CCNA_01655 +2.3 9.9 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00441 +2.3 9.1 chemotaxis receiver domain protein cheYI compare
CCNA_03893 +2.3 5.3 hypothetical protein compare
CCNA_00031 +2.2 10.5 toxin protein VapC compare
CCNA_02475 +2.2 14.6 transcriptional regulator vanR compare
CCNA_01752 +2.2 10.8 YicC-family protein compare
CCNA_02805 +2.2 8.9 hypothetical protein compare
CCNA_03688 +2.2 9.8 AsnC-family transcriptional regulator compare
CCNA_01414 +2.2 12.4 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_01728 +2.2 10.1 short chain dehydrogenase compare
CCNA_03214 +2.2 9.4 hypothetical protein compare
CCNA_02339 +2.2 11.6 methyltransferase compare
CCNA_03089 +2.2 9.1 hypothetical protein compare
CCNA_01405 +2.2 6.9 GIY-YIG domain protein compare
CCNA_02368 +2.2 15.6 alpha-glucosidase compare
CCNA_01339 +2.2 8.1 ArsR-family transcriptional regulator compare
CCNA_01011 +2.2 8.9 imidazolonepropionase compare
CCNA_02030 +2.2 2.8 hypothetical protein compare
CCNA_02073 +2.2 5.9 cupin domain transcriptional regulator compare
CCNA_00895 +2.2 10.7 hypothetical protein compare
CCNA_01193 +2.1 14.3 amylosucrase compare
CCNA_03832 +2.1 6.9 TetR-family transcriptional regulator compare
CCNA_02250 +2.1 3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_02728 +2.1 9.6 hypothetical protein compare
CCNA_01580 +2.1 5.9 M15 superfamily membrane peptidase compare
CCNA_02171 +2.1 12.5 nucleoside permease nupC compare
CCNA_02324 +2.1 10.7 heat shock protein 33 hsp33 compare
CCNA_00675 +2.1 6.6 VapC-like PIN domain ribonuclease compare
CCNA_02081 +2.1 4.9 Sec-independent protein translocase protein tatB compare
CCNA_01008 +2.1 13.5 urocanate hydratase compare
CCNA_01679 +2.1 11.1 succinylglutamic semialdehyde dehydrogenase compare
CCNA_03762 +2.1 5.6 acetolactate synthase-related protein compare
CCNA_00705 +2.1 5.3 hypothetical protein compare
CCNA_01802 +2.1 3.4 hypothetical protein compare
CCNA_01533 +2.1 7.8 hypothetical protein compare
CCNA_01412 +2.1 12.0 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_00947 +2.1 13.5 flagellar hook protein FlgE compare
CCNA_01505 +2.1 3.9 hypothetical protein compare
CCNA_02328 +2.1 1.3 cell cycle regulatory protein GcrA compare
CCNA_00527 +2.1 10.6 hypothetical protein compare
CCNA_01242 +2.1 16.4 amino acid permease compare
CCNA_00443 +2.1 8.9 chemotaxis protein cheW compare
CCNA_01393 +2.1 13.0 soluble lytic murein transglycosylase compare
CCNA_R0054 +2.0 3.4 tRNA-Gly compare
CCNA_01923 +2.0 9.5 ATP-dependent RNA helicase compare
CCNA_02132 +2.0 6.1 LacI-family transcriptional regulator compare
CCNA_03215 +2.0 11.6 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_03129 +2.0 10.9 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_02843 +2.0 4.4 toxin protein parE-3 compare
CCNA_00400 +2.0 7.5 MarR/EmrR-family transcriptional regulator compare
CCNA_00149 +2.0 4.6 Cro/CI-family transcriptional regulator compare
CCNA_00931 +2.0 12.4 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_02729 +2.0 14.2 oligopeptide transporter compare
CCNA_03464 +2.0 5.3 glycine cleavage system H protein compare
CCNA_03400 +2.0 2.5 hypothetical protein compare
CCNA_03372 +2.0 4.8 bacterioferritin-associated ferredoxin compare
CCNA_01406 +2.0 7.5 metal-dependent hydrolase compare
CCNA_02330 +2.0 6.7 hypothetical protein compare
CCNA_00945 +2.0 9.0 chemotaxis protein MotD compare
CCNA_03622 +2.0 9.5 beta-lactamase repressor compare
CCNA_01751 +2.0 6.9 aminodeoxychorismate lyase compare
CCNA_03420 +2.0 10.3 hypothetical protein compare
CCNA_01619 +2.0 8.6 NYN domain protein compare
CCNA_02760 +2.0 3.4 hypothetical protein compare
CCNA_01415 +2.0 13.4 methyltransferase compare
CCNA_00885 +2.0 9.7 MazE-like antitoxin protein compare
CCNA_01020 +2.0 8.4 LacI-family transcriptional regulator compare
CCNA_01057 +2.0 10.0 hypothetical protein compare
CCNA_01949 +2.0 4.8 bactofilin A BacA compare
CCNA_01677 +2.0 8.2 carboxypeptidase G2 precursor compare
CCNA_01361 +2.0 3.9 PepSY superfamily protein compare
CCNA_02125 +2.0 13.4 polar development protein podJ compare
CCNA_00147 +1.9 2.7 hypothetical protein compare
CCNA_00073 +1.9 14.6 HemY domain membrane protein compare
CCNA_00027 +1.9 3.8 2OG-Fe(II) oxygenase compare
CCNA_00834 +1.9 7.6 flagellin FljM compare
CCNA_00448 +1.9 9.8 cheU protein compare
CCNA_01827 +1.9 7.4 cobyric acid synthase CobQ compare
CCNA_01678 +1.9 8.8 arginine N-succinyltransferase, beta chain compare
CCNA_03514 +1.9 8.8 cytochrome c oxidase assembly protein ctaG compare
CCNA_03936 +1.9 4.8 hypothetical protein compare
CCNA_01813 +1.9 8.8 tRNA-dihydrouridine synthase compare
CCNA_00682 +1.9 8.5 MarR-family transcriptional regulator compare
CCNA_00962 +1.9 8.6 MarR-family transcriptional regulator compare
CCNA_00072 +1.9 10.7 hypothetical protein compare
CCNA_03156 +1.9 7.2 putative periplasmic protein compare
CCNA_00769 +1.9 8.6 TetR family transcriptional regulator compare
CCNA_00954 +1.9 13.0 AAA-family response regulator flbD compare
CCNA_03949 +1.9 8.1 hypothetical protein compare
CCNA_00803 +1.9 5.8 chemotaxis protein cheW compare
CCNA_00944 +1.9 8.4 flagellar hook length determination protein compare
CCNA_00368 +1.9 9.3 phosphonates transport system permease protein phnE compare
CCNA_00114 +1.8 7.0 MarR/EmrR-family transcriptional regulator compare
CCNA_00215 +1.8 9.6 SapC surface layer protein compare
CCNA_02560 +1.8 10.0 stalk cross-band protein StpC compare
CCNA_02395 +1.8 5.5 hypothetical protein compare
CCNA_01338 +1.8 6.6 glyoxalase family protein compare
CCNA_02614 +1.8 8.4 fumarylacetoacetase superfamily protein compare
CCNA_00438 +1.8 4.7 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source a-Cyclodextrin in Caulobacter crescentus NA1000

For carbon source a-Cyclodextrin across organisms