Experiment set1IT005 for Pseudomonas fluorescens FW300-N2E2

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -6.4 -4.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_3842 -6.3 -4.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4596 -6.2 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_4597 -6.1 -8.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_5176 -6.1 -4.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_77 -6.0 -4.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_5006 -5.9 -8.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3783 -5.8 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4362 -5.7 -4.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_3751 -5.7 -11.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_4077 -5.6 -3.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2258 -5.6 -6.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3839 -5.6 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3253 -5.5 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5175 -5.4 -12.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_3610 -5.4 -6.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_4826 -5.3 -8.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_4564 -5.3 -10.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_3782 -5.1 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5177 -5.1 -10.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_3752 -5.1 -19.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_71 -5.0 -6.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_5780 -4.9 -8.8 Periplasmic protease compare
Pf6N2E2_4825 -4.9 -8.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_4047 -4.8 -4.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_2753 -4.7 -3.2 HtrA protease/chaperone protein compare
Pf6N2E2_3248 -4.4 -4.9 Probable transmembrane protein compare
Pf6N2E2_66 -4.3 -9.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_4048 -4.3 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4059 -4.2 -2.0 DNA-binding protein HU-alpha compare
Pf6N2E2_1381 -4.2 -8.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_6140 -4.1 -1.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5150 -3.9 -6.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5156 -3.8 -2.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5160 -3.8 -2.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4372 -3.7 -5.7 FIG00460773: hypothetical protein compare
Pf6N2E2_3841 -3.7 -6.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3062 -3.7 -5.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_2217 -3.6 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3252 -3.6 -7.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3630 -3.6 -6.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2756 -3.5 -8.6 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4803 -3.5 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3932 -3.4 -6.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4752 -3.3 -12.6 Malate synthase G (EC 2.3.3.9) compare
Pf6N2E2_4611 -3.2 -4.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3271 -3.1 -3.4 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3940 -3.0 -9.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2586 -3.0 -2.8 Hpt domain protein compare
Pf6N2E2_1666 -3.0 -5.3 Transcriptional regulator, LysR family compare
Pf6N2E2_1400 -3.0 -10.5 Sensory box histidine kinase/response regulator compare
Pf6N2E2_3611 -3.0 -2.5 HflC protein compare
Pf6N2E2_63 -3.0 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_4638 -2.9 -4.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_3060 -2.9 -3.0 Outer membrane protein H precursor compare
Pf6N2E2_5579 -2.9 -7.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4206 -2.8 -2.6 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2218 -2.8 -5.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2885 -2.8 -6.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1667 -2.7 -4.0 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2073 -2.6 -8.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_1401 -2.6 -7.6 FIG00955631: hypothetical protein compare
Pf6N2E2_5723 -2.6 -10.8 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5316 -2.6 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3612 -2.5 -2.9 HflK protein compare
Pf6N2E2_1665 -2.5 -2.8 hypothetical protein compare
Pf6N2E2_1932 -2.5 -5.9 Transcriptional regulator, IclR family compare
Pf6N2E2_2507 -2.3 -6.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4759 -2.2 -10.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3460 -2.2 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_805 -2.2 -7.6 Xylulose kinase (EC 2.7.1.17) (from data) conserved
Pf6N2E2_1664 -2.2 -6.0 Nitrate/nitrite transporter compare
Pf6N2E2_2752 -2.2 -8.0 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5252 -2.2 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4204 -2.1 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1402 -2.1 -4.6 hypothetical protein compare
Pf6N2E2_1056 -2.1 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3661 -2.1 -5.1 hypothetical protein compare
Pf6N2E2_2574 -2.0 -3.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_1668 -2.0 -6.7 Xylonate dehydratase (EC 4.2.1.82) (from data) conserved
Pf6N2E2_3835 -2.0 -3.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5255 -2.0 -8.5 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5219 -1.9 -5.8 FIG140336: TPR domain protein compare
Pf6N2E2_3984 -1.9 -7.9 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3170 -1.9 -4.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_658 -1.8 -8.2 sensor histidine kinase compare
Pf6N2E2_2074 -1.8 -1.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2827 -1.8 -1.5 hypothetical protein compare
Pf6N2E2_4009 -1.8 -7.0 GGDEF domain protein compare
Pf6N2E2_3349 -1.8 -2.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1099 -1.8 -1.3 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_2261 -1.8 -6.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_1445 -1.7 -1.7 Glutathione S-transferase compare
Pf6N2E2_622 -1.7 -4.3 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_5527 -1.7 -2.0 Cold shock protein CspC compare
Pf6N2E2_2292 -1.7 -2.7 Universal stress protein family COG0589 compare
Pf6N2E2_3833 -1.7 -3.9 hypothetical protein compare
Pf6N2E2_3257 -1.6 -3.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5727 -1.6 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_3260 -1.6 -4.9 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_302 -1.6 -4.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5728 -1.5 -2.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5794 -1.5 -1.4 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5943 -1.5 -1.8 hypothetical protein compare
Pf6N2E2_3876 -1.5 -4.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2121 -1.5 -2.8 hypothetical protein compare
Pf6N2E2_2514 -1.5 -3.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5555 -1.5 -1.3 Cold shock protein CspA compare
Pf6N2E2_2357 -1.4 -3.2 Invasion protein iagA compare
Pf6N2E2_4453 -1.4 -9.9 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2508 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_5328 -1.4 -2.7 FIG00958649: hypothetical protein compare
Pf6N2E2_2223 -1.4 -2.3 hypothetical protein compare
Pf6N2E2_3834 -1.4 -4.2 Lipoprotein NlpD compare
Pf6N2E2_3617 -1.4 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1315 -1.3 -1.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5609 -1.3 -4.0 DNA-binding response regulator ColR compare
Pf6N2E2_1211 -1.3 -2.0 Lactoylglutathione lyase compare
Pf6N2E2_2314 -1.3 -2.1 VapB protein (antitoxin to VapC) compare
Pf6N2E2_4205 -1.3 -3.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_863 -1.3 -4.6 Transcriptional regulator, IclR family compare
Pf6N2E2_5919 -1.3 -2.0 Flp pilus assembly protein TadD, contains TPR repeats compare
Pf6N2E2_248 -1.2 -4.6 hypothetical protein compare
Pf6N2E2_2746 -1.2 -3.8 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5571 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_3461 -1.2 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_180 -1.2 -2.7 Transcriptional regulator, MerR family compare
Pf6N2E2_3942 -1.2 -5.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_1453 -1.2 -3.8 Xylose activator XylR (AraC family) compare
Pf6N2E2_2479 -1.2 -2.7 Transcription elongation factor GreB compare
Pf6N2E2_3613 -1.2 -4.3 GTP-binding protein HflX compare
Pf6N2E2_2440 -1.2 -1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3840 -1.2 -2.4 FIG00956267: hypothetical protein compare
Pf6N2E2_5236 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_4747 -1.2 -2.2 Transmembrane sensor compare
Pf6N2E2_3258 -1.1 -3.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2065 -1.1 -2.9 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3277 -1.1 -2.1 FagA protein compare
Pf6N2E2_3588 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_962 -1.1 -2.0 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_819 -1.0 -2.3 Response regulator compare
Pf6N2E2_2503 -1.0 -0.8 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_50 -1.0 -4.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_6038 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_5613 -1.0 -1.4 FIG00953674: hypothetical protein compare
Pf6N2E2_4071 -1.0 -3.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2022 -1.0 -4.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_4052 -1.0 -1.3 FIG00955481: hypothetical protein compare
Pf6N2E2_3255 -1.0 -1.7 YrbA protein compare
Pf6N2E2_3021 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_595 -1.0 -1.2 Arsenical resistance operon repressor compare
Pf6N2E2_3466 -1.0 -1.7 FIG000605: protein co-occurring with transport systems (COG1739) compare
Pf6N2E2_4479 -1.0 -2.5 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2156 -1.0 -2.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_4749 -1.0 -1.9 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_621 -1.0 -3.3 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1834 -0.9 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2561 -0.9 -1.6 FIG00955434: hypothetical protein compare
Pf6N2E2_4478 -0.9 -4.5 FIG019278: hypothetical protein compare
Pf6N2E2_4025 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_4548 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_1663 -0.9 -2.6 2-keto-3-deoxy-L-fuconate dehydrogenase compare
Pf6N2E2_1456 -0.9 -2.9 D-xylose transport ATP-binding protein XylG compare
Pf6N2E2_204 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3763 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_810 -0.9 -4.0 Various polyols ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_5899 -0.9 -3.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2675 -0.9 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4579 -0.9 -1.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1371 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_5186 -0.9 -4.4 FIG00954491: hypothetical protein compare
Pf6N2E2_4585 -0.9 -5.5 Cell division protein FtsX compare
Pf6N2E2_1281 -0.9 -1.7 ATPase involved in DNA repair compare
Pf6N2E2_733 -0.9 -2.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_624 -0.9 -3.5 hypothetical protein PA3071 compare
Pf6N2E2_3027 -0.9 -1.0 Baseplate assembly protein V compare
Pf6N2E2_3537 -0.9 -2.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4416 -0.9 -1.3 Tyrosine recombinase XerC compare
Pf6N2E2_28 -0.9 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5816 -0.9 -1.2 Smr domain protein compare
Pf6N2E2_3695 -0.9 -1.9 Helix-turn-helix motif compare
Pf6N2E2_5894 -0.9 -3.8 Putative threonine efflux protein compare
Pf6N2E2_5761 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_88 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3118 -0.8 -2.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_4459 -0.8 -1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_1455 -0.8 -2.9 Xylose ABC transporter, periplasmic xylose-binding protein XylF compare
Pf6N2E2_127 -0.8 -1.0 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3557 -0.8 -2.0 Chaperone-modulator protein CbpM compare
Pf6N2E2_1454 -0.8 -3.1 Xylose isomerase (EC 5.3.1.5) compare
Pf6N2E2_504 -0.8 -1.5 DNA-binding response regulator compare
Pf6N2E2_2927 -0.8 -1.7 Putative signal peptide protein compare
Pf6N2E2_4146 -0.8 -1.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3285 -0.8 -1.6 Rod shape-determining protein MreD compare
Pf6N2E2_5936 -0.8 -1.5 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_5001 -0.8 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3941 -0.8 -2.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3095 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_1450 -0.8 -1.3 FIG00960438: hypothetical protein compare
Pf6N2E2_4272 -0.8 -2.1 putative membrane protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens FW300-N2E2

For carbon source D-Xylose across organisms