Experiment set1IT005 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5665 -3.6 -4.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_5666 -3.3 -3.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1831 -3.2 -10.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -3.2 -12.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_6 -3.2 -4.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.2 -10.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1624 -3.2 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3153 -3.2 -2.2 hypothetical protein compare
Pf1N1B4_1534 -3.1 -15.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_27 -3.0 -5.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_742 -3.0 -6.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_15 -3.0 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2879 -3.0 -6.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2549 -2.9 -8.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1626 -2.9 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2112 -2.9 -12.4 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_4065 -2.8 -7.6 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1533 -2.8 -7.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2545 -2.8 -12.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2858 -2.7 -9.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2548 -2.7 -6.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_2009 -2.7 -4.8 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_1408 -2.7 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2338 -2.7 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1434 -2.7 -7.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1617 -2.6 -6.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1830 -2.6 -7.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1565 -2.6 -4.3 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_847 -2.6 -8.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1067 -2.5 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2384 -2.5 -8.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1627 -2.5 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2878 -2.4 -7.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3812 -2.4 -7.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1315 -2.4 -7.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3697 -2.4 -7.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2547 -2.4 -3.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_12 -2.3 -6.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_350 -2.3 -6.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2682 -2.3 -2.7 Antiholin-like protein LrgA compare
Pf1N1B4_2272 -2.3 -4.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3506 -2.2 -7.0 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2282 -2.2 -8.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_58 -2.2 -5.6 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_762 -2.1 -5.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2337 -2.1 -4.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3081 -2.1 -15.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2011 -2.1 -7.6 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_595 -2.0 -8.5 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_2010 -2.0 -5.1 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2859 -1.9 -11.9 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1683 -1.9 -2.2 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_652 -1.8 -7.4 Sensory box histidine kinase compare
Pf1N1B4_1906 -1.8 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_598 -1.8 -4.4 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_2487 -1.8 -7.3 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_2322 -1.8 -2.9 FIG015547: peptidase, M16 family compare
Pf1N1B4_2850 -1.8 -6.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_1566 -1.8 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_4040 -1.7 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2280 -1.7 -7.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2486 -1.7 -2.6 hypothetical protein compare
Pf1N1B4_5371 -1.7 -2.3 hypothetical protein compare
Pf1N1B4_4029 -1.7 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2534 -1.6 -2.7 DnaJ-like protein DjlA compare
Pf1N1B4_3518 -1.6 -2.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_967 -1.6 -2.1 hypothetical protein compare
Pf1N1B4_596 -1.6 -3.7 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_2377 -1.6 -5.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_1653 -1.6 -5.6 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_3833 -1.6 -5.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_4028 -1.5 -3.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_673 -1.5 -3.1 MoxR-like ATPases compare
Pf1N1B4_593 -1.5 -5.0 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_1568 -1.5 -2.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_4030 -1.5 -3.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_600 -1.5 -4.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_4550 -1.5 -2.2 beta-ketoacyl synthase, putative compare
Pf1N1B4_4715 -1.5 -2.5 Transcriptional regulator compare
Pf1N1B4_2105 -1.5 -2.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_886 -1.5 -2.2 FIG137478: Hypothetical protein compare
Pf1N1B4_2417 -1.5 -2.2 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf1N1B4_2339 -1.5 -1.9 COG1872 compare
Pf1N1B4_2489 -1.4 -4.1 Biotin synthesis protein BioH compare
Pf1N1B4_1695 -1.4 -1.6 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_2491 -1.4 -3.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_373 -1.4 -2.5 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_5652 -1.4 -2.7 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf1N1B4_648 -1.4 -12.1 Outer membrane porin, OprD family compare
Pf1N1B4_644 -1.4 -1.8 Cold shock protein CspC compare
Pf1N1B4_1307 -1.4 -2.0 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_5137 -1.4 -5.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_594 -1.3 -5.1 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_5512 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_1328 -1.3 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4437 -1.3 -2.7 hypothetical protein compare
Pf1N1B4_5513 -1.3 -2.0 hypothetical protein compare
Pf1N1B4_138 -1.3 -1.6 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_1535 -1.3 -2.6 hypothetical protein compare
Pf1N1B4_2488 -1.3 -5.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2948 -1.3 -2.3 FIG00954698: hypothetical protein compare
Pf1N1B4_4035 -1.3 -1.9 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1057 -1.3 -1.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_3065 -1.2 -2.7 FIG00954412: hypothetical protein compare
Pf1N1B4_7 -1.2 -3.3 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_683 -1.2 -2.7 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_131 -1.2 -2.3 hypothetical protein compare
Pf1N1B4_1611 -1.2 -3.6 Nitrogen regulation protein NR(I) compare
Pf1N1B4_2209 -1.2 -5.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_3687 -1.2 -2.4 FIG00953885: hypothetical protein compare
Pf1N1B4_4594 -1.1 -1.6 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_3627 -1.1 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_5407 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_3278 -1.1 -2.5 putative exported protein compare
Pf1N1B4_4518 -1.1 -2.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_4139 -1.1 -1.8 Transcriptional regulator, MerR family compare
Pf1N1B4_2173 -1.1 -2.0 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_691 -1.1 -2.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_888 -1.1 -3.0 Transglycosylase, Slt family compare
Pf1N1B4_3906 -1.1 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_1625 -1.1 -2.3 FIG00956267: hypothetical protein compare
Pf1N1B4_1329 -1.1 -3.5 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1561 -1.1 -2.2 FIG00954300: hypothetical protein compare
Pf1N1B4_1317 -1.1 -2.1 Sensor histidine kinase/response regulator compare
Pf1N1B4_578 -1.1 -1.7 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1326 -1.1 -3.8 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf1N1B4_3241 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_4038 -1.0 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4208 -1.0 -2.0 organophosphate pesticide hydrolase compare
Pf1N1B4_3145 -1.0 -2.5 Decarboxylase family protein compare
Pf1N1B4_761 -1.0 -1.8 FIG00954879: hypothetical protein compare
Pf1N1B4_4295 -1.0 -2.2 FIG00954434: hypothetical protein compare
Pf1N1B4_219 -1.0 -2.7 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_2360 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_1340 -1.0 -1.8 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_814 -1.0 -1.5 Transcriptional regulator, PadR family compare
Pf1N1B4_608 -1.0 -1.9 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_1332 -1.0 -1.9 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_5239 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_348 -1.0 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_5112 -1.0 -1.9 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_1140 -1.0 -3.3 Iron-uptake factor PiuC compare
Pf1N1B4_5864 -1.0 -1.6 Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF compare
Pf1N1B4_4417 -1.0 -1.8 Transcriptional regulator compare
Pf1N1B4_3531 -1.0 -1.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_3290 -1.0 -1.8 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_3451 -1.0 -2.1 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_4446 -0.9 -1.8 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_647 -0.9 -4.4 hypothetical protein compare
Pf1N1B4_1003 -0.9 -1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3001 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_556 -0.9 -2.4 Gluconate permease compare
Pf1N1B4_5853 -0.9 -2.3 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_2784 -0.9 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2526 -0.9 -6.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_5480 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_5138 -0.9 -2.8 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_2244 -0.9 -1.0 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_5329 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_3939 -0.9 -1.7 FIG00953489: hypothetical protein compare
Pf1N1B4_1542 -0.9 -2.0 Type IV pilus biogenesis protein PilN compare
Pf1N1B4_5507 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_3264 -0.9 -2.1 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1094 -0.9 -1.9 FIG005080: Possible exported protein compare
Pf1N1B4_1730 -0.9 -1.8 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
Pf1N1B4_1519 -0.9 -2.1 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_5383 -0.9 -4.2 hypothetical protein compare
Pf1N1B4_1749 -0.9 -1.3 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_1610 -0.9 -2.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2917 -0.9 -4.3 FIG140336: TPR domain protein compare
Pf1N1B4_429 -0.9 -2.0 FIG00964214: hypothetical protein compare
Pf1N1B4_3685 -0.9 -2.5 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_2695 -0.9 -1.6 Rare lipoprotein A precursor compare
Pf1N1B4_5446 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_257 -0.9 -3.1 sensor histidine kinase/response regulator compare
Pf1N1B4_240 -0.9 -1.1 Transcriptional regulators compare
Pf1N1B4_2768 -0.8 -2.3 DNA repair protein RadA compare
Pf1N1B4_2144 -0.8 -4.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_3709 -0.8 -2.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_3751 -0.8 -1.4 FIG00953060: hypothetical protein compare
Pf1N1B4_4230 -0.8 -3.1 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) compare
Pf1N1B4_678 -0.8 -4.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3707 -0.8 -3.7 Cobyrinic acid A,C-diamide synthase compare
Pf1N1B4_4145 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_5059 -0.8 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_4455 -0.8 -1.5 FIG00953528: hypothetical protein compare
Pf1N1B4_1113 -0.8 -3.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_4957 -0.8 -1.6 Transcriptional regulator, TetR family compare
Pf1N1B4_3700 -0.8 -1.9 Putative permease often clustered with de novo purine synthesis compare
Pf1N1B4_688 -0.8 -1.0 FIG00955483: hypothetical protein compare
Pf1N1B4_715 -0.8 -2.9 Iron-regulated protein A precursor compare
Pf1N1B4_5420 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_3983 -0.8 -1.6 cI compare
Pf1N1B4_4257 -0.8 -1.4 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5249 -0.8 -1.7 Outer membrane protein A precursor compare
Pf1N1B4_5275 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_1263 -0.8 -1.6 Cu(I)-responsive transcriptional regulator compare
Pf1N1B4_841 -0.8 -2.6 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_603 -0.8 -2.0 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2368 -0.8 -2.2 Malonate transporter, MadL subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source D-Glucose across organisms