Experiment set1IT005 for Sinorhizobium meliloti 1021

Compare to:

D-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -10.3 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
SMc02767 -8.7 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02245 -8.2 -5.7 dihydroorotate dehydrogenase 2 compare
SMc02766 -8.1 -11.1 tryptophan synthase subunit beta compare
SMc00236 -8.0 -5.5 Indole-3-glycerol phosphate synthase compare
SMc04405 -8.0 -7.8 3-isopropylmalate dehydrogenase compare
SMc00640 -7.9 -5.5 phosphoserine aminotransferase compare
SMc04002 -7.9 -7.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00917 -7.9 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02569 -7.9 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc00495 -7.8 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02899 -7.7 -9.2 prephenate dehydratase compare
SMc01801 -7.7 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01843 -7.7 -10.6 5,10-methylenetetrahydrofolate reductase compare
SMc00918 -7.6 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
SMc04045 -7.6 -5.3 dihydroxy-acid dehydratase compare
SMc04026 -7.6 -9.0 glutamate synthase compare
SMc02717 -7.6 -7.4 2-isopropylmalate synthase compare
SMc03797 -7.5 -10.3 homoserine O-succinyltransferase compare
SMc01494 -7.3 -9.6 phosphoserine phosphatase compare
SMc01726 -7.3 -6.0 acetylglutamate kinase compare
SMc02725 -7.2 -11.1 anthranilate synthase compare
SMc02137 -7.2 -5.0 ornithine carbamoyltransferase compare
SMc00614 -7.2 -7.0 phosphoribosylglycinamide formyltransferase compare
SMc01431 -7.1 -9.7 acetolactate synthase 3 catalytic subunit compare
SMc04028 -7.0 -15.6 glutamate synthase compare
SMc00993 -6.9 -9.5 phosphoribosylamine--glycine ligase compare
SMc03777 -6.8 -6.7 gamma-glutamyl phosphate reductase compare
SMc03823 -6.8 -11.5 isopropylmalate isomerase large subunit compare
SMc00235 -6.7 -9.0 anthranilate phosphoribosyltransferase compare
SMc00554 -6.7 -6.5 amidophosphoribosyltransferase compare
SMc00494 -6.6 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00488 -6.6 -17.5 phosphoribosylformylglycinamidine synthase II compare
SMa1635 -6.5 -2.6 hypothetical protein compare
SMc00412 -6.5 -4.5 orotidine 5'-phosphate decarboxylase compare
SMc03776 -6.5 -4.5 gamma-glutamyl kinase compare
SMc00615 -6.5 -8.9 phosphoribosylaminoimidazole synthetase compare
SMc02217 -6.4 -7.6 O-succinylhomoserine sulfhydrylase compare
SMc02765 -6.3 -11.6 tryptophan synthase subunit alpha compare
SMc03112 -6.3 -15.7 B12-dependent methionine synthase compare
SMc03826 -6.2 -4.3 argininosuccinate synthase compare
SMc01360 -6.2 -4.3 aspartate carbamoyltransferase catalytic subunit compare
SMc01361 -6.1 -6.0 dihydroorotase compare
SMc00711 -6.1 -7.2 cyclohexadienyl dehydrogenase compare
SMc02123 -5.9 -4.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc02124 -5.8 -15.6 nitrite reductase compare
SMc00131 -5.7 -16.2 transcriptional regulator compare
SMc02165 -5.7 -9.6 orotate phosphoribosyltransferase compare
SMc01004 -5.7 -7.2 phosphoribosyl-AMP cyclohydrolase compare
SMc00293 -5.7 -12.2 homoserine dehydrogenase compare
SMc04088 -5.7 -8.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03229 -5.6 -3.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SM_b21174 -5.5 -6.6 phosphate uptake ABC transporter permease compare
SMc02755 -5.4 -8.2 S-adenosyl-L-homocysteine hydrolase compare
SMc00876 -5.3 -6.4 ATP-binding MRP protein compare
SMc02307 -5.2 -8.7 histidinol dehydrogenase compare
SMc01054 -5.2 -6.0 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01850 -5.2 -5.0 hypothetical protein compare
SMc01880 -5.1 -3.5 pantoate--beta-alanine ligase compare
SMc02166 -5.1 -11.5 dihydroorotase compare
SMc01881 -5.1 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02570 -5.1 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03763 -5.1 -3.5 cytosine-specific methyltransferase compare
SMc03978 -5.0 -3.5 transketolase compare
SMa0247 -5.0 -7.7 2-dehydro-3-deoxy-D-arabinonate dehydratase, 2,4-dioxopentanoate forming (from data) conserved
SMc01215 -4.8 -3.3 carbamoyl phosphate synthase large subunit compare
SM_b21175 -4.7 -7.1 phosphate uptake ABC transporter permease compare
SM_b21176 -4.6 -6.3 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc04001 -4.6 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc02707 -4.5 -4.3 hypothetical protein compare
SMc00091 -4.5 -13.7 sulfate adenylyltransferase compare
SMc00493 -4.5 -5.4 phosphoribosylformylglycinamidine synthase I compare
SMc02172 -4.4 -12.1 transcriptional regulator compare
SM_b21112 -4.3 -9.6 L-2,4-diketo-3-deoxyrhamnonate hydrolase; 2,4-dioxopentanoate hydrolase (from data) conserved
SMc00017 -4.3 -2.3 homoserine kinase compare
SMc01053 -4.3 -5.9 siroheme synthase compare
SMc03795 -4.3 -2.4 isopropylmalate isomerase small subunit compare
SMc01501 -4.3 -5.4 mannitol 2-dehydrogenase compare
SMc02246 -4.3 -1.7 hypothetical protein compare
SMc00092 -4.3 -13.9 phosphoadenosine phosphosulfate reductase compare
SMc02776 -4.2 -7.2 D-arabinoate dehydratase (EC 4.2.1.5); also involved in L-fucose catabolism (from data) conserved
SMc01124 -4.1 -12.1 PII uridylyl-transferase compare
SMc00294 -4.0 -12.0 aminotransferase compare
SMc01569 -3.9 -3.1 carbamoyl phosphate synthase small subunit compare
SMc00090 -3.9 -9.6 sulfate adenylyltransferase compare
SMc00641 -3.9 -5.3 D-3-phosphoglycerate dehydrogenase compare
SMc02833 -3.9 -3.9 penicillin-insensitive murein endopeptidase compare
SMc01770 -3.9 -2.7 serine hydroxymethyltransferase compare
SMc02138 -3.8 -6.3 acetylornithine transaminase compare
SM_b21177 -3.8 -8.3 phosphate uptake ABC transporter ATP-binding protein compare
SM_b20994 -3.7 -6.0 hypothetical protein compare
SMc02838 -3.7 -9.3 phosphoglyceromutase compare
SMc04346 -3.7 -4.6 ketol-acid reductoisomerase compare
SMc02983 -3.3 -8.5 ornithine, DAP, or arginine decarboxylase compare
SMc01430 -3.2 -7.1 acetolactate synthase 3 regulatory subunit compare
SMc00414 -3.1 -13.2 hypothetical protein compare
SMc00815 -3.1 -2.5 inosine 5'-monophosphate dehydrogenase compare
SMc04243 -3.1 -8.4 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc01028 -3.0 -15.2 phosphopyruvate hydratase compare
SMc00169 -3.0 -18.1 malic enzyme compare
SMc02775 -2.9 -10.5 D-arabinose 1-dehydrogenase (from data) compare
SMc01842 -2.9 -3.1 methyltransferase transcription regulator protein compare
SMc04244 -2.7 -8.9 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc04245 -2.7 -11.5 high-affinity zinc uptake system ABC transporter protein compare
SMc01500 -2.7 -3.5 sorbitol dehydrogenase compare
SMc01206 -2.7 -3.2 queuine tRNA-ribosyltransferase compare
SMc02232 -2.6 -5.5 hypothetical protein compare
SMc02978 -2.6 -5.0 hypothetical protein compare
SMc03164 -2.5 -11.9 Xylulose kinase (EC 2.7.1.17) (from data) conserved
SMc00302 -2.5 -4.5 hypothetical protein compare
SMc03981 -2.4 -6.4 phosphoglycerate kinase compare
SMc00450 -2.4 -3.7 protoheme IX farnesyltransferase compare
SM_b21101 -2.3 -7.4 L-fucono-1,5-lactonase; D-arabinolactonase (from data) compare
SMc00619 -2.3 -3.4 hypothetical protein compare
SMa2020 -2.3 -5.5 Transcriptional regulator compare
SMc03053 -2.3 -2.4 flagellar biosynthesis protein FliQ compare
SMc01438 -2.1 -5.5 protease precursor signal peptide protein compare
SMc02234 -2.1 -3.9 hypothetical protein compare
SMc02147 -1.9 -8.1 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc03979 -1.8 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b20392 -1.8 -5.4 transcriptional regulator NanR compare
SMc00013 -1.7 -3.2 cytochrome C oxidase subunit III transmembrane protein compare
SMc02102 -1.7 -3.9 hypothetical protein compare
SMc00334 -1.7 -2.8 cytidylate kinase compare
SMc02141 -1.7 -5.5 phosphate transporter PhoU compare
SMc01187 -1.7 -2.9 rare lipoprotein A compare
SMc01147 -1.7 -4.3 coproporphyrinogen III oxidase compare
SMc03046 -1.7 -6.2 transcriptional regulator compare
SMc01578 -1.6 -10.2 aspartate aminotransferase compare
SMc04260 -1.6 -7.9 transcriptional regulator compare
SMc02979 -1.6 -6.9 hypothetical protein compare
SMc02407 -1.6 -6.6 hypothetical protein compare
SMc02724 -1.5 -4.3 hypothetical protein compare
SMc00760 -1.5 -5.7 recombinase A compare
SMc00726 -1.5 -1.1 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01260 -1.5 -5.0 transcriptional regulator compare
SMc00006 -1.5 -2.7 hypothetical protein compare
SMc02574 -1.5 -2.6 imidazoleglycerol-phosphate dehydratase compare
SMc03849 -1.5 -1.7 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02562 -1.5 -6.7 phosphoenolpyruvate carboxykinase compare
SMc00982 -1.4 -6.2 dioxygenase compare
SMc00511 -1.4 -4.5 D-ribulose-5-phosphate 3-epimerase compare
SMc01342 -1.4 -4.4 hypothetical protein compare
SMc00188 -1.4 -7.2 cytochrome B transmembrane protein compare
SMc03100 -1.4 -0.8 hypothetical protein compare
SMc04296 -1.4 -1.7 cell division protein FtsZ compare
SMa1095 -1.4 -1.2 hypothetical protein compare
SMc02055 -1.4 -2.1 phytoene synthase compare
SMa0789 -1.4 -4.5 GntR family transcriptional regulator compare
SMc02363 -1.4 -2.9 cytochrome C-type biogenesis transmembrane protein compare
SMc02164 -1.4 -2.5 fructokinase compare
SMc00602 -1.4 -5.9 excinuclease ABC subunit C compare
SMc01164 -1.4 -7.4 hypothetical protein compare
SMc02897 -1.4 -2.1 cytochrome C transmembrane protein compare
SMc02573 -1.4 -1.8 hypothetical protein compare
SMc01768 -1.3 -6.1 transcriptional regulator compare
SMc02308 -1.3 -3.9 hypothetical protein compare
SM_b20901 -1.3 -6.5 transcriptional regulator compare
SMc00492 -1.3 -1.2 hypothetical protein compare
SMc02059 -1.3 -5.8 hypothetical protein conserved
SMc02225 -1.3 -3.7 hypothetical protein compare
SMc04003 -1.3 -2.0 50S ribosomal protein L36 compare
SMc00088 -1.3 -2.0 hypothetical protein compare
SMc00143 -1.2 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc02425 -1.2 -2.9 transcriptional regulator compare
SMc02140 -1.2 -1.5 phosphate regulon transcriptional regulatory protein compare
SMc01043 -1.2 -7.1 nitrogen assimilation regulatory protein compare
SMc02690 -1.2 -2.8 hypothetical protein compare
SMc00981 -1.2 -6.9 ferredoxin protein compare
SM_b20312 -1.2 -6.9 dihydroxyacetone kinase compare
SMc00821 -1.2 -1.7 hypothetical protein compare
SMc03863 -1.2 -2.0 50S ribosomal protein L19 compare
SMc03967 -1.2 -1.2 Holliday junction resolvase compare
SMc02521 -1.1 -2.8 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SM_b20314 -1.1 -6.9 glycerone kinase compare
SMc02361 -1.1 -4.1 cytochrome C-type biogenesis transmembrane protein compare
SM_b20313 -1.1 -4.3 glycerone kinase compare
SMc03974 -1.1 -3.0 hypothetical protein compare
SMc02362 -1.1 -3.5 cytochrome c-type biogenesis protein CcmE compare
SMc01368 -1.1 -4.4 transport transmembrane protein compare
SM_b21132 -1.1 -4.2 sulfate ABC transporter permease compare
SMc02050 -1.1 -2.8 trigger factor compare
SMc02812 -1.1 -3.3 hypothetical protein compare
SMc03165 -1.0 -2.1 Novel Xylose regulator from LacI family (from data) compare
SMc00175 -1.0 -3.3 ABC transporter ATP-binding protein compare
SM_b21130 -1.0 -5.1 sulfate ABC transporter ATP-binding protein compare
SMc03051 -1.0 -3.4 flagellar biosynthesis repressor FlbT compare
SMc02227 -1.0 -4.1 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc04242 -1.0 -1.3 zinc uptake regulation protein compare
SM_b20086 -1.0 -1.8 hypothetical protein compare
SM_b21210 -1.0 -2.1 two-component response regulator protein compare
SMc01235 -1.0 -7.1 excinuclease ABC subunit A compare
SMc01258 -1.0 -4.0 hypothetical protein compare
SMc04330 -1.0 -2.1 trimethylamine methyltransferase compare
SMc03258 -1.0 -4.5 transcriptional regulator compare
SMc03973 -1.0 -6.3 hypothetical protein compare
SMc01091 -0.9 -1.9 hypothetical protein compare
SMc02149 -0.9 -1.2 hypothetical protein compare
SM_b20811 -0.9 -2.2 hypothetical protein compare
SMc00010 -0.9 -1.9 cytochrome C oxidase polypeptide I transmembrane protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Arabinose in Sinorhizobium meliloti 1021

For carbon source D-Arabinose across organisms