Experiment set1IT005 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with copper (II) chloride dihydrate 0.16 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS00605 +5.2 7.0 endonuclease III compare
CA265_RS23145 +3.7 13.3 hypothetical protein compare
CA265_RS10905 +3.6 20.5 iron-dependent repressor compare
CA265_RS00610 +3.5 8.5 hypothetical protein compare
CA265_RS21060 +3.4 8.9 hypothetical protein compare
CA265_RS21430 +3.3 2.2 hypothetical protein compare
CA265_RS00600 +3.3 5.3 recombinase RecA compare
CA265_RS21425 +3.2 4.0 hypothetical protein compare
CA265_RS10990 +3.1 16.6 hypothetical protein compare
CA265_RS23525 +3.1 21.8 hypothetical protein compare
CA265_RS20890 +2.7 4.3 MRP family ATP-binding protein compare
CA265_RS09705 +2.7 7.7 copper oxidase compare
CA265_RS03600 +2.7 14.9 hypothetical protein compare
CA265_RS21900 +2.7 21.9 two-component sensor histidine kinase compare
CA265_RS14535 +2.5 7.2 DUF4783 domain-containing protein compare
CA265_RS21620 +2.3 16.1 hybrid sensor histidine kinase/response regulator compare
CA265_RS16005 +2.1 6.7 hypothetical protein compare
CA265_RS19030 +2.0 9.5 hypothetical protein compare
CA265_RS23155 +2.0 11.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS07515 +1.9 11.2 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS14555 +1.9 13.7 endopeptidase La compare
CA265_RS18495 +1.9 2.7 hypothetical protein compare
CA265_RS10980 +1.8 12.7 histidine kinase compare
CA265_RS04330 +1.8 7.5 transcriptional regulator compare
CA265_RS24230 +1.8 9.0 RNA polymerase sigma factor compare
CA265_RS21905 +1.8 8.2 hypothetical protein compare
CA265_RS20525 +1.8 2.9 hypothetical protein compare
CA265_RS18770 +1.8 5.1 hypothetical protein compare
CA265_RS23305 +1.6 2.1 hypothetical protein compare
CA265_RS18530 +1.6 3.7 aspartate aminotransferase family protein compare
CA265_RS08880 +1.6 10.1 chromate transporter compare
CA265_RS09335 +1.5 6.3 DUF4442 domain-containing protein compare
CA265_RS18550 +1.5 2.5 N-acetyltransferase compare
CA265_RS23100 +1.5 6.6 hypothetical protein compare
CA265_RS12940 +1.4 5.8 peptidase dimerization domain protein compare
CA265_RS06285 +1.4 9.2 YggS family pyridoxal phosphate enzyme compare
CA265_RS10985 +1.4 3.8 hypothetical protein compare
CA265_RS18225 +1.3 5.9 DNA-binding response regulator compare
CA265_RS24385 +1.3 2.5 GNAT family N-acetyltransferase compare
CA265_RS00380 +1.3 2.8 hypothetical protein compare
CA265_RS10910 +1.3 8.7 iron/manganese transporter compare
CA265_RS19405 +1.3 4.1 transcriptional regulator compare
CA265_RS01200 +1.3 4.5 hypothetical protein compare
CA265_RS23510 +1.3 4.1 energy transducer TonB compare
CA265_RS01205 +1.2 4.2 import component protein compare
CA265_RS12745 +1.2 5.8 NUDIX hydrolase compare
CA265_RS25235 +1.2 7.5 hypothetical protein compare
CA265_RS19140 +1.2 2.1 tRNA-Ile compare
CA265_RS16995 +1.2 3.4 hypothetical protein compare
CA265_RS18260 +1.2 1.4 hypothetical protein compare
CA265_RS01195 +1.2 3.2 hypothetical protein compare
CA265_RS07880 +1.2 5.8 transcriptional regulator compare
CA265_RS20310 +1.1 9.1 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS13255 +1.1 4.7 leucine dehydrogenase compare
CA265_RS21330 +1.1 5.2 TetR family transcriptional regulator compare
CA265_RS21845 +1.1 4.3 transcriptional regulator compare
CA265_RS23430 +1.1 4.3 hypothetical protein compare
CA265_RS16385 +1.1 6.6 transporter compare
CA265_RS15000 +1.1 7.2 amino acid permease compare
CA265_RS17555 +1.1 7.5 hypothetical protein compare
CA265_RS17565 +1.1 3.6 hypothetical protein compare
CA265_RS16045 +1.1 3.8 peptide-methionine (S)-S-oxide reductase compare
CA265_RS10045 +1.1 5.8 peptidase compare
CA265_RS24185 +1.1 5.9 efflux transporter periplasmic adaptor subunit compare
CA265_RS05940 +1.1 3.6 hypothetical protein compare
CA265_RS22410 +1.0 5.0 ATP-binding protein compare
CA265_RS16010 +1.0 3.3 short-chain dehydrogenase compare
CA265_RS10610 +1.0 3.4 hypothetical protein compare
CA265_RS15280 +1.0 4.7 glycine C-acetyltransferase compare
CA265_RS18780 +1.0 4.1 YicC family protein compare
CA265_RS18600 +1.0 5.4 hypothetical protein compare
CA265_RS23120 +1.0 2.4 hypothetical protein compare
CA265_RS07510 +1.0 5.6 ABC transporter compare
CA265_RS22650 +1.0 4.3 branched chain amino acid aminotransferase compare
CA265_RS06595 +1.0 1.3 Arc family DNA binding domain-containing protein compare
CA265_RS10475 +0.9 4.0 amidinotransferase compare
CA265_RS16000 +0.9 4.3 hypothetical protein compare
CA265_RS19535 +0.9 3.9 hypothetical protein compare
CA265_RS22285 +0.9 3.7 LysR family transcriptional regulator compare
CA265_RS17535 +0.9 5.2 deoxyribodipyrimidine photolyase compare
CA265_RS20570 +0.9 3.9 hypothetical protein compare
CA265_RS17440 +0.9 5.7 Fis family transcriptional regulator compare
CA265_RS22490 +0.9 2.0 MarR family transcriptional regulator compare
CA265_RS09200 +0.9 5.1 hypothetical protein compare
CA265_RS18500 +0.9 3.3 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS15870 +0.9 2.3 hypothetical protein compare
CA265_RS24895 +0.9 4.2 hypothetical protein compare
CA265_RS08445 +0.9 1.1 endonuclease compare
CA265_RS24815 +0.9 2.0 hypothetical protein compare
CA265_RS25445 +0.9 4.0 ABC transporter compare
CA265_RS08700 +0.9 7.0 glutamate synthase large subunit compare
CA265_RS14125 +0.9 1.8 hypothetical protein compare
CA265_RS01320 +0.9 2.0 hypothetical protein compare
CA265_RS22260 +0.8 4.2 hypothetical protein compare
CA265_RS07485 +0.8 4.3 macrolide ABC transporter ATP-binding protein compare
CA265_RS08060 +0.8 2.1 hypothetical protein compare
CA265_RS22165 +0.8 1.4 hypothetical protein compare
CA265_RS25095 +0.8 4.3 MBL fold metallo-hydrolase compare
CA265_RS18315 +0.8 4.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase compare
CA265_RS19680 +0.8 4.0 DNA-binding transcriptional regulator OxyR compare
CA265_RS18230 +0.8 2.8 two-component sensor histidine kinase compare
CA265_RS25360 +0.8 3.8 phosphoribosyltransferase compare
CA265_RS00490 +0.8 1.8 hypothetical protein compare
CA265_RS06040 +0.8 2.3 hypothetical protein compare
CA265_RS04325 +0.8 1.6 hypothetical protein compare
CA265_RS18275 +0.8 2.0 pyrophosphatase compare
CA265_RS25180 +0.8 2.7 hypothetical protein compare
CA265_RS14975 +0.8 3.2 ammonia channel protein compare
CA265_RS21440 +0.8 2.7 peptidylprolyl isomerase compare
CA265_RS18775 +0.8 2.4 hypothetical protein compare
CA265_RS22120 +0.8 2.8 hypothetical protein compare
CA265_RS22630 +0.8 2.5 nucleoside-diphosphate sugar epimerase compare
CA265_RS06940 +0.8 4.2 hypothetical protein compare
CA265_RS19910 +0.8 3.0 GDSL family lipase compare
CA265_RS08855 +0.8 4.5 MFS transporter compare
CA265_RS14925 +0.8 2.1 hypothetical protein compare
CA265_RS04980 +0.8 3.6 recombination protein RecR compare
CA265_RS21625 +0.8 4.8 histidine kinase compare
CA265_RS21645 +0.8 2.6 response regulator compare
CA265_RS22010 +0.8 0.8 hypothetical protein compare
CA265_RS22620 +0.8 1.4 hypothetical protein compare
CA265_RS06875 +0.8 5.5 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS22890 +0.8 2.1 anthranilate synthase component I compare
CA265_RS05720 +0.8 3.5 hypothetical protein compare
CA265_RS05665 +0.8 4.2 LLM class flavin-dependent oxidoreductase compare
CA265_RS15175 +0.7 2.7 thioredoxin-dependent thiol peroxidase compare
CA265_RS18485 +0.7 2.9 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS25355 +0.7 3.5 DUF2807 domain-containing protein compare
CA265_RS21315 +0.7 1.6 hypothetical protein compare
CA265_RS19465 +0.7 1.4 protein tyrosine phosphatase compare
CA265_RS24700 +0.7 2.0 hypothetical protein compare
CA265_RS18810 +0.7 3.0 thioredoxin family protein compare
CA265_RS15615 +0.7 2.6 malate dehydrogenase compare
CA265_RS03280 +0.7 2.4 hypothetical protein compare
CA265_RS16630 +0.7 2.4 hypothetical protein compare
CA265_RS20335 +0.7 5.6 SusC/RagA family TonB-linked outer membrane protein compare
CA265_RS22945 +0.7 1.4 hypothetical protein compare
CA265_RS17040 +0.7 1.4 hypothetical protein compare
CA265_RS10595 +0.7 3.8 dicarboxylate/amino acid:cation symporter compare
CA265_RS20130 +0.7 3.6 hypothetical protein compare
CA265_RS19930 +0.7 2.2 hypothetical protein compare
CA265_RS09035 +0.7 1.9 anti-anti-sigma factor compare
CA265_RS04175 +0.7 3.0 phosphonate ABC transporter ATP-binding protein compare
CA265_RS25110 +0.7 3.0 polyprenyl synthetase compare
CA265_RS22405 +0.7 3.9 hypothetical protein compare
CA265_RS18855 +0.7 1.6 hypothetical protein compare
CA265_RS21630 +0.7 2.5 response regulator compare
CA265_RS12985 +0.7 1.1 hypothetical protein compare
CA265_RS17560 +0.7 4.1 peptidylprolyl isomerase compare
CA265_RS20305 +0.7 4.2 RagB/SusD family nutrient uptake outer membrane protein compare
CA265_RS21580 +0.7 1.2 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS05060 +0.7 3.4 hypothetical protein compare
CA265_RS21840 +0.7 1.6 phosphohydrolase compare
CA265_RS20365 +0.7 1.0 hypothetical protein compare
CA265_RS14340 +0.7 3.5 AI-2E family transporter compare
CA265_RS14325 +0.7 1.0 hypothetical protein compare
CA265_RS23840 +0.6 3.2 S1/P1 Nuclease compare
CA265_RS01560 +0.6 1.5 circadian clock protein KaiB compare
CA265_RS06430 +0.6 1.6 hypothetical protein compare
CA265_RS12800 +0.6 1.7 NAD(P)H-dependent oxidoreductase compare
CA265_RS23485 +0.6 2.0 hypothetical protein compare
CA265_RS23875 +0.6 2.1 hypothetical protein compare
CA265_RS25115 +0.6 2.8 hypothetical protein compare
CA265_RS11475 +0.6 1.6 hypothetical protein compare
CA265_RS06315 +0.6 3.0 uridine kinase compare
CA265_RS23760 +0.6 3.4 lauroyl acyltransferase compare
CA265_RS13720 +0.6 1.3 4-oxalocrotonate tautomerase compare
CA265_RS02965 +0.6 2.3 hypothetical protein compare
CA265_RS19640 +0.6 1.4 hypothetical protein compare
CA265_RS01055 +0.6 1.4 hypothetical protein compare
CA265_RS17760 +0.6 3.7 hypothetical protein compare
CA265_RS00055 +0.6 3.0 hypothetical protein compare
CA265_RS21670 +0.6 1.2 hypothetical protein compare
CA265_RS04755 +0.6 2.9 proline hydroxylase compare
CA265_RS14375 +0.6 1.3 hypothetical protein compare
CA265_RS21320 +0.6 1.5 hypothetical protein compare
CA265_RS12665 +0.6 0.7 cold-shock protein compare
CA265_RS23115 +0.6 2.6 hypothetical protein compare
CA265_RS25435 +0.6 1.5 hypothetical protein compare
CA265_RS22265 +0.6 2.5 transcriptional regulator compare
CA265_RS07570 +0.6 2.7 hypothetical protein compare
CA265_RS09125 +0.6 2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
CA265_RS14020 +0.6 3.7 ABC transporter ATP-binding protein compare
CA265_RS11635 +0.6 1.9 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS08050 +0.6 3.1 hypothetical protein compare
CA265_RS03430 +0.6 3.6 spermidine synthase compare
CA265_RS17790 +0.6 1.8 caa(3)-type oxidase compare
CA265_RS22415 +0.6 2.3 hypothetical protein compare
CA265_RS06705 +0.6 2.0 hypothetical protein compare
CA265_RS03835 +0.6 0.9 hypothetical protein compare
CA265_RS04245 +0.6 1.0 hypothetical protein compare
CA265_RS18565 +0.6 2.4 hypothetical protein compare
CA265_RS06880 +0.6 3.5 RND transporter compare
CA265_RS10040 +0.6 0.7 hypothetical protein compare
CA265_RS25270 +0.6 0.8 hypothetical protein compare
CA265_RS20270 +0.6 0.9 methionine--tRNA ligase compare
CA265_RS12340 +0.6 1.1 hypothetical protein compare
CA265_RS09885 +0.6 1.6 hypothetical protein compare
CA265_RS09830 +0.6 3.7 polyphosphate kinase 1 compare
CA265_RS24180 +0.6 4.1 acriflavin resistance protein compare


Specific Phenotypes

For 16 genes in this experiment

For stress copper (II) chloride dihydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress copper (II) chloride dihydrate across organisms