Experiment set1IT005 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Paraquat dichloride 0.064 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS06255 -4.5 -3.1 lipoprotein compare
RR42_RS02775 -4.0 -2.8 molecular chaperone SurA compare
RR42_RS02810 -3.5 -2.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS26080 -3.3 -1.6 hypothetical protein compare
RR42_RS04420 -3.2 -4.4 required for efflux of an amino acid polymer (from data) compare
RR42_RS10920 -3.2 -2.2 hypothetical protein compare
RR42_RS17560 -3.1 -4.5 Fur family transcriptional regulator compare
RR42_RS00655 -3.1 -3.0 membrane protein compare
RR42_RS36400 -3.1 -1.5 hypothetical protein compare
RR42_RS33255 -3.0 -2.9 protein-tyrosine phosphatase compare
RR42_RS12040 -2.9 -7.4 MFS transporter compare
RR42_RS20655 -2.9 -5.6 multidrug transporter compare
RR42_RS15740 -2.8 -1.9 hypothetical protein compare
RR42_RS04895 -2.7 -8.5 serine/threonine protein phosphatase compare
RR42_RS15795 -2.6 -4.0 spore coat protein compare
RR42_RS17060 -2.6 -12.3 histidine kinase compare
RR42_RS27290 -2.6 -2.4 hypothetical protein compare
RR42_RS31495 -2.5 -1.7 Cro/Cl family transcriptional regulator compare
RR42_RS00440 -2.5 -1.6 hypothetical protein compare
RR42_RS18855 -2.5 -2.4 preprotein translocase compare
RR42_RS15455 -2.5 -4.4 membrane protein compare
RR42_RS17805 -2.4 -1.1 hypothetical protein compare
RR42_RS03080 -2.4 -2.8 recombinase RecA compare
RR42_RS36110 -2.4 -3.3 membrane protein compare
RR42_RS17055 -2.4 -5.9 LuxR family transcriptional regulator compare
RR42_RS01720 -2.4 -2.2 membrane protein compare
RR42_RS12240 -2.3 -1.5 hypothetical protein compare
RR42_RS07555 -2.3 -2.1 potassium transporter Kup compare
RR42_RS15775 -2.3 -3.6 N-acetylneuraminate synthase compare
RR42_RS09290 -2.3 -1.5 hypothetical protein compare
RR42_RS15810 -2.2 -2.6 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS13125 -2.2 -3.6 pyrrolo-quinoline quinone compare
RR42_RS21955 -2.2 -1.4 hypothetical protein compare
RR42_RS04405 -2.2 -5.6 cyanophycin synthetase compare
RR42_RS06250 -2.2 -2.1 dihydrodipicolinate synthase compare
RR42_RS06635 -2.2 -3.4 MerR family transcriptional regulator compare
RR42_RS25625 -2.2 -1.6 LysR family transcriptional regulator compare
RR42_RS20440 -2.1 -1.4 histidine kinase compare
RR42_RS22395 -2.1 -2.5 hypothetical protein compare
RR42_RS02045 -2.1 -8.9 GTPase compare
RR42_RS26875 -2.1 -1.4 LysR family transcriptional regulator compare
RR42_RS33260 -2.1 -5.1 multidrug MFS transporter compare
RR42_RS04415 -2.1 -7.0 ABC transporter compare
RR42_RS27320 -2.1 -1.9 ferredoxin compare
RR42_RS01795 -2.0 -8.6 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS15800 -2.0 -2.4 aldo/keto reductase compare
RR42_RS13910 -2.0 -5.4 glutamate racemase compare
RR42_RS13130 -2.0 -1.9 membrane protein compare
RR42_RS37455 -2.0 -1.6 hypothetical protein compare
RR42_RS33250 -2.0 -4.6 tyrosine protein kinase compare
RR42_RS15770 -2.0 -3.7 hypothetical protein compare
RR42_RS28000 -2.0 -1.7 hypothetical protein compare
RR42_RS04410 -2.0 -7.4 cyanophycin synthetase compare
RR42_RS03185 -2.0 -2.0 branched-chain amino acid permease compare
RR42_RS21505 -1.9 -1.2 hypothetical protein compare
RR42_RS04325 -1.9 -2.6 membrane protein compare
RR42_RS29280 -1.9 -1.2 hypothetical protein compare
RR42_RS27695 -1.9 -2.4 polyketide cyclase compare
RR42_RS15475 -1.9 -4.3 protein tolQ compare
RR42_RS17620 -1.9 -3.0 phosphatidylglycerophosphatase compare
RR42_RS17865 -1.9 -4.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS21435 -1.9 -2.5 hypothetical protein compare
RR42_RS18270 -1.8 -2.8 murein transglycosylase compare
RR42_RS01785 -1.8 -3.0 PTS fructose transporter subunit IIA compare
RR42_RS05420 -1.8 -2.3 membrane protein compare
RR42_RS16640 -1.8 -1.2 LysR family transcriptional regulator compare
RR42_RS15785 -1.8 -5.3 glycosyl transferase family 28 compare
RR42_RS19885 -1.8 -1.2 aminoglycoside transporter compare
RR42_RS26590 -1.8 -1.4 hypothetical protein compare
RR42_RS12315 -1.8 -1.4 transcriptional regulator compare
RR42_RS15790 -1.8 -5.2 aminotransferase class III compare
RR42_RS32710 -1.8 -1.9 hypothetical protein compare
RR42_RS31435 -1.7 -1.1 hypothetical protein compare
RR42_RS10105 -1.7 -2.6 phosphonate ABC transporter compare
RR42_RS18965 -1.7 -9.4 ABC transporter permease compare
RR42_RS03280 -1.7 -2.6 LysR family transcriptional regulator compare
RR42_RS26220 -1.7 -1.4 citrate lyase subunit beta compare
RR42_RS01420 -1.7 -1.3 2', 3'-cyclic nucleotide 2'-phosphodiesterase compare
RR42_RS14985 -1.7 -1.3 30S ribosomal protein S21 compare
RR42_RS17565 -1.7 -7.4 LysR family transcriptional regulator compare
RR42_RS07295 -1.7 -1.8 LysR family transcriptional regulator compare
RR42_RS18945 -1.7 -2.5 toluene tolerance protein compare
RR42_RS03035 -1.7 -1.1 membrane protein compare
RR42_RS02440 -1.6 -1.6 membrane protein compare
RR42_RS08575 -1.6 -1.0 tail protein compare
RR42_RS26535 -1.6 -2.6 diguanylate cyclase compare
RR42_RS01255 -1.6 -4.9 lauroyl acyltransferase compare
RR42_RS15970 -1.6 -1.2 lipoprotein compare
RR42_RS29335 -1.6 -1.3 integrase compare
RR42_RS18970 -1.6 -9.1 toluene ABC transporter ATP-binding protein compare
RR42_RS31940 -1.6 -2.6 2-nitropropane dioxygenase compare
RR42_RS24605 -1.6 -5.5 TetR family transcriptional regulator compare
RR42_RS06735 -1.6 -1.3 hypothetical protein compare
RR42_RS29630 -1.6 -3.1 hypothetical protein compare
RR42_RS08880 -1.6 -1.9 hypothetical protein compare
RR42_RS09015 -1.6 -2.5 trigger factor compare
RR42_RS34585 -1.6 -1.1 LysR family transcriptional regulator compare
RR42_RS11580 -1.5 -1.6 hypothetical protein compare
RR42_RS07605 -1.5 -3.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS15745 -1.5 -5.0 group1 glycosyl transferase compare
RR42_RS18120 -1.5 -1.4 cell division protein MraZ compare
RR42_RS04475 -1.5 -6.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18830 -1.5 -4.1 large-conductance mechanosensitive channel compare
RR42_RS35220 -1.5 -1.0 peptide ABC transporter ATP-binding protein compare
RR42_RS15825 -1.5 -6.8 capsular biosynthesis protein compare
RR42_RS37450 -1.5 -4.6 mechanosensitive ion channel protein MscS compare
RR42_RS22250 -1.5 -1.4 hypothetical protein compare
RR42_RS04260 -1.5 -4.3 chemotaxis protein compare
RR42_RS16570 -1.5 -3.0 2-nitropropane dioxygenase compare
RR42_RS06630 -1.5 -1.3 integration host factor subunit alpha compare
RR42_RS17610 -1.4 -7.2 malate dehydrogenase compare
RR42_RS19090 -1.4 -1.4 cytochrome C compare
RR42_RS16360 -1.4 -1.6 transposase compare
RR42_RS06655 -1.4 -2.5 hypothetical protein compare
RR42_RS33910 -1.4 -2.4 LysR family transcriptional regulator compare
RR42_RS27115 -1.4 -2.5 amino acid ABC transporter ATP-binding protein compare
RR42_RS26730 -1.4 -3.0 Fe-S oxidoreductase compare
RR42_RS15080 -1.4 -1.8 GntR family transcriptional regulator compare
RR42_RS00715 -1.4 -1.8 ferritin compare
RR42_RS12235 -1.4 -1.7 terminase compare
RR42_RS07615 -1.4 -1.3 3-ketoacyl-ACP reductase compare
RR42_RS06820 -1.4 -2.1 hypothetical protein compare
RR42_RS13025 -1.3 -2.5 hypothetical protein compare
RR42_RS23745 -1.3 -2.8 phenylacetic acid degradation protein compare
RR42_RS23515 -1.3 -2.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS13305 -1.3 -1.2 hypothetical protein compare
RR42_RS15035 -1.3 -3.0 ZIP zinc transporter compare
RR42_RS20320 -1.3 -2.0 ornithine cyclodeaminase compare
RR42_RS01195 -1.3 -2.1 excinuclease ATPase compare
RR42_RS19005 -1.3 -3.2 3-dehydroquinate synthase compare
RR42_RS20370 -1.3 -0.8 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS26985 -1.3 -1.9 hypothetical protein compare
RR42_RS08000 -1.3 -1.0 hypothetical protein compare
RR42_RS15730 -1.3 -4.2 sugar transferase compare
RR42_RS37240 -1.3 -1.0 hypothetical protein compare
RR42_RS09300 -1.3 -1.4 aromatic ring-opening dioxygenase LigB compare
RR42_RS33235 -1.3 -4.9 GDP-mannose 4,6-dehydratase compare
RR42_RS10540 -1.3 -1.6 acetyl-CoA acetyltransferase compare
RR42_RS05430 -1.3 -1.8 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS12485 -1.3 -2.2 ABC transporter ATP-binding protein compare
RR42_RS05240 -1.3 -2.1 LysR family transcriptional regulator compare
RR42_RS17880 -1.3 -0.8 hypothetical protein compare
RR42_RS20570 -1.3 -1.4 biopolymer transporter ExbD compare
RR42_RS13040 -1.3 -1.5 iron transporter compare
RR42_RS07365 -1.3 -1.9 pyruvate dehydrogenase compare
RR42_RS08350 -1.3 -1.8 hypothetical protein compare
RR42_RS19045 -1.2 -0.8 frataxin compare
RR42_RS15070 -1.2 -3.6 membrane protein compare
RR42_RS01355 -1.2 -2.6 biotin attachment protein compare
RR42_RS09085 -1.2 -1.1 C4-dicarboxylate ABC transporter permease compare
RR42_RS21220 -1.2 -1.4 iron transporter FeoB compare
RR42_RS18420 -1.2 -4.6 hypothetical protein compare
RR42_RS11770 -1.2 -1.1 cyclase compare
RR42_RS26655 -1.2 -3.4 hypothetical protein compare
RR42_RS07110 -1.2 -1.4 hypothetical protein compare
RR42_RS14480 -1.2 -2.6 hypothetical protein compare
RR42_RS30310 -1.2 -1.4 signal transduction protein compare
RR42_RS09045 -1.2 -5.1 peptidylprolyl isomerase compare
RR42_RS28935 -1.2 -4.9 hypothetical protein compare
RR42_RS07350 -1.2 -2.2 hypothetical protein compare
RR42_RS12210 -1.1 -2.4 gamma-glutamyl cyclotransferase compare
RR42_RS08110 -1.1 -1.5 hypothetical protein compare
RR42_RS15470 -1.1 -1.3 biopolymer transporter ExbD compare
RR42_RS25815 -1.1 -2.4 hypothetical protein compare
RR42_RS13380 -1.1 -3.6 microcin ABC transporter permease compare
RR42_RS11520 -1.1 -1.7 ABC transporter ATP-binding protein compare
RR42_RS17165 -1.1 -1.7 hypothetical protein compare
RR42_RS33695 -1.1 -1.2 membrane protein compare
RR42_RS05500 -1.1 -0.9 preprotein translocase subunit SecG compare
RR42_RS26770 -1.1 -1.4 extradiol dioxygenase compare
RR42_RS10150 -1.1 -1.4 hypothetical protein compare
RR42_RS27700 -1.1 -1.1 hypothetical protein compare
RR42_RS34215 -1.1 -0.9 ferredoxin compare
RR42_RS19895 -1.1 -1.1 elongation factor GreAB compare
RR42_RS02490 -1.1 -1.3 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
RR42_RS18960 -1.1 -6.2 ABC transporter substrate-binding protein compare
RR42_RS03560 -1.1 -1.6 hypothetical protein compare
RR42_RS23575 -1.1 -2.3 flagellar hook-basal body protein FliE compare
RR42_RS04060 -1.1 -1.7 hypothetical protein compare
RR42_RS17595 -1.1 -1.3 hypothetical protein compare
RR42_RS14395 -1.1 -0.6 entericidin compare
RR42_RS11550 -1.1 -2.2 3-oxoacyl-ACP reductase compare
RR42_RS34520 -1.1 -0.7 transposase compare
RR42_RS05290 -1.1 -1.5 ankyrin compare
RR42_RS15415 -1.0 -1.2 membrane protein compare
RR42_RS06785 -1.0 -1.3 hypothetical protein compare
RR42_RS07040 -1.0 -2.0 hypothetical protein compare
RR42_RS20205 -1.0 -1.1 chromosome partitioning protein compare
RR42_RS32655 -1.0 -2.0 catechol 2,3-dioxygenase compare
RR42_RS00255 -1.0 -2.3 ABC transporter permease compare
RR42_RS19750 -1.0 -0.8 MBL fold metallo-hydrolase compare
RR42_RS13515 -1.0 -1.7 membrane protein compare
RR42_RS09580 -1.0 -0.8 hypothetical protein compare
RR42_RS03910 -1.0 -1.1 (2Fe-2S)-binding protein compare
RR42_RS27520 -1.0 -1.5 hypothetical protein compare
RR42_RS23485 -1.0 -1.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
RR42_RS15420 -1.0 -1.9 hypothetical protein compare
RR42_RS33455 -1.0 -2.2 endoribonuclease L-PSP compare
RR42_RS33245 -1.0 -3.9 mannose-1-phosphate guanyltransferase compare
RR42_RS19795 -1.0 -1.6 GntR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress Paraquat dichloride in Cupriavidus basilensis FW507-4G11

For stress Paraquat dichloride across organisms