Experiment set1IT005 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with Paraquat dichloride 0.064 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS19880 +11.5 14.1 hypothetical protein compare
RR42_RS03275 +3.8 14.7 membrane protein compare
RR42_RS22925 +3.5 2.0 RND transporter compare
RR42_RS29095 +3.2 1.7 XRE family transcriptional regulator compare
RR42_RS27665 +2.1 9.6 endoribonuclease L-PSP compare
RR42_RS14685 +1.8 7.9 ABC transporter ATP-binding protein compare
RR42_RS27680 +1.8 11.1 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
RR42_RS29610 +1.7 2.1 cytochrome C2 compare
RR42_RS14885 +1.7 1.8 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS27670 +1.7 8.9 LysR family transcriptional regulator compare
RR42_RS18390 +1.6 4.6 hypothetical protein compare
RR42_RS31285 +1.5 2.8 XRE family transcriptional regulator compare
RR42_RS25785 +1.5 3.9 TetR family transcriptional regulator compare
RR42_RS15380 +1.5 5.4 kynurenine formamidase compare
RR42_RS12590 +1.5 1.6 50S ribosomal protein L9 compare
RR42_RS24930 +1.5 1.8 AraC family transcriptional regulator compare
RR42_RS24685 +1.4 1.7 hypothetical protein compare
RR42_RS18385 +1.4 3.2 hypothetical protein compare
RR42_RS16675 +1.3 2.1 hypothetical protein compare
RR42_RS30450 +1.3 4.0 cation:proton antiporter compare
RR42_RS08360 +1.3 1.9 hypothetical protein compare
RR42_RS31830 +1.3 2.0 short-chain dehydrogenase compare
RR42_RS33070 +1.3 2.0 oxidoreductase compare
RR42_RS27160 +1.2 2.3 acetyl-CoA acetyltransferase compare
RR42_RS28005 +1.2 2.1 phosphonate/organophosphate ester transporter subunit compare
RR42_RS30285 +1.2 2.4 amidohydrolase compare
RR42_RS21925 +1.2 2.4 membrane protein compare
RR42_RS23730 +1.2 2.3 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS05485 +1.2 2.4 polynucleotide phosphorylase/polyadenylase compare
RR42_RS23845 +1.2 2.3 hypothetical protein compare
RR42_RS03630 +1.1 1.5 cold-shock protein compare
RR42_RS31245 +1.1 2.8 membrane protein compare
RR42_RS27675 +1.1 3.7 esterase compare
RR42_RS27685 +1.1 7.3 multidrug efflux RND transporter permease subunit compare
RR42_RS32070 +1.1 3.0 LysR family transcriptional regulator compare
RR42_RS10565 +1.1 2.3 alpha/beta hydrolase compare
RR42_RS02950 +1.1 1.8 malonate decarboxylase subunit beta compare
RR42_RS27570 +1.1 2.4 murein hydrolase effector protein compare
RR42_RS26540 +1.1 1.2 3-phosphoglycerate dehydrogenase compare
RR42_RS22165 +1.1 1.4 hypothetical protein compare
RR42_RS06870 +1.1 2.8 hypothetical protein compare
RR42_RS08450 +1.1 0.9 hypothetical protein compare
RR42_RS18485 +1.1 1.2 glutaredoxin compare
RR42_RS32895 +1.1 3.2 ABC transporter permease compare
RR42_RS04180 +1.0 2.1 methyltransferase compare
RR42_RS06810 +1.0 3.3 hypothetical protein compare
RR42_RS05955 +1.0 1.3 hypothetical protein compare
RR42_RS19735 +1.0 2.8 hypothetical protein compare
RR42_RS12085 +1.0 1.5 glyoxalase compare
RR42_RS01565 +1.0 3.0 hypothetical protein compare
RR42_RS34535 +1.0 1.8 membrane protein compare
RR42_RS32875 +1.0 2.6 hypothetical protein compare
RR42_RS13465 +1.0 2.6 phosphate transporter permease subunit PstC compare
RR42_RS14965 +1.0 3.2 hypothetical protein compare
RR42_RS16910 +1.0 1.2 histidine utilization protein HutD compare
RR42_RS10940 +1.0 3.3 hypothetical protein compare
RR42_RS34525 +1.0 2.8 type VI secretion protein VasK compare
RR42_RS22030 +1.0 2.1 hypothetical protein compare
RR42_RS06335 +1.0 1.5 cyclophilin compare
RR42_RS05125 +1.0 2.2 malonic semialdehyde reductase compare
RR42_RS19085 +1.0 1.1 cytochrome C biogenesis protein ResB compare
RR42_RS31995 +1.0 1.5 flavin reductase compare
RR42_RS18380 +1.0 1.9 hypothetical protein compare
RR42_RS04735 +1.0 1.2 hypothetical protein compare
RR42_RS20575 +1.0 1.9 hypothetical protein compare
RR42_RS16245 +1.0 1.8 uroporphyrin-III methyltransferase compare
RR42_RS06270 +1.0 5.1 cupin compare
RR42_RS12615 +1.0 1.8 LexA family transcriptional regulator compare
RR42_RS30570 +1.0 2.7 hypothetical protein compare
RR42_RS18350 +0.9 2.4 NADPH:quinone dehydrogenase compare
RR42_RS05945 +0.9 1.5 thioredoxin compare
RR42_RS31240 +0.9 2.9 AMP-dependent synthetase compare
RR42_RS08490 +0.9 2.5 phage Rha protein compare
RR42_RS06380 +0.9 2.7 hypothetical protein compare
RR42_RS29305 +0.9 3.7 short-chain dehydrogenase compare
RR42_RS22355 +0.9 1.7 ModE family transcriptional regulator compare
RR42_RS02420 +0.9 0.9 SAM-dependent methyltransferase compare
RR42_RS04175 +0.9 3.1 hypothetical protein compare
RR42_RS08860 +0.9 2.2 radical SAM protein compare
RR42_RS05840 +0.9 1.5 GCN5 family acetyltransferase compare
RR42_RS19635 +0.9 1.0 hypothetical protein compare
RR42_RS23035 +0.9 1.5 sporulation protein compare
RR42_RS21455 +0.9 1.4 transposase compare
RR42_RS04015 +0.9 1.0 RNA polymerase sigma factor compare
RR42_RS29790 +0.9 2.0 hypothetical protein compare
RR42_RS15135 +0.9 1.5 LysR family transcriptional regulator compare
RR42_RS30320 +0.8 1.7 hypothetical protein compare
RR42_RS13420 +0.8 2.0 phosphohistidine phosphatase compare
RR42_RS24490 +0.8 1.2 hypothetical protein compare
RR42_RS17050 +0.8 3.6 phosphoribosylglycinamide formyltransferase compare
RR42_RS31645 +0.8 2.5 cysteine dioxygenase compare
RR42_RS27915 +0.8 1.3 acyl-CoA synthetase compare
RR42_RS07115 +0.8 0.9 hypothetical protein compare
RR42_RS06510 +0.8 2.5 hypothetical protein compare
RR42_RS30905 +0.8 1.5 aminotransferase DegT compare
RR42_RS30765 +0.8 1.0 tRNA-Arg compare
RR42_RS06880 +0.8 1.2 hypothetical protein compare
RR42_RS12520 +0.8 2.5 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS01755 +0.8 1.6 nitrogen regulatory protein P-II 1 compare
RR42_RS19785 +0.8 2.3 allantoate amidohydrolase compare
RR42_RS08280 +0.8 1.4 hypothetical protein compare
RR42_RS06860 +0.8 1.1 hypothetical protein compare
RR42_RS09835 +0.8 1.5 chemotaxis protein compare
RR42_RS02540 +0.8 2.1 taurine ABC transporter permease compare
RR42_RS36350 +0.8 1.0 D-amino acid oxidase compare
RR42_RS02215 +0.8 1.4 fumarate reductase compare
RR42_RS21630 +0.8 0.9 Asp/Glu racemase compare
RR42_RS27690 +0.8 2.1 RND transporter compare
RR42_RS06225 +0.8 3.6 phosphoesterase compare
RR42_RS00360 +0.8 1.7 Asp/Glu/hydantoin racemase compare
RR42_RS02310 +0.8 2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS24985 +0.8 1.3 hypothetical protein compare
RR42_RS14990 +0.8 2.5 membrane protein compare
RR42_RS19790 +0.8 3.2 C4-dicarboxylate ABC transporter compare
RR42_RS08175 +0.8 0.9 hypothetical protein compare
RR42_RS07995 +0.8 1.1 hypothetical protein compare
RR42_RS13620 +0.8 0.8 ferredoxin compare
RR42_RS04295 +0.8 3.6 hypothetical protein compare
RR42_RS25765 +0.8 2.1 hypothetical protein compare
RR42_RS00370 +0.7 2.4 Asp/Glu/hydantoin racemase compare
RR42_RS15620 +0.7 2.4 tRNA-Gly compare
RR42_RS09670 +0.7 2.8 hypothetical protein compare
RR42_RS34700 +0.7 2.4 hypothetical protein compare
RR42_RS23015 +0.7 3.6 hypothetical protein compare
RR42_RS13335 +0.7 4.6 multidrug transporter MatE compare
RR42_RS30260 +0.7 3.2 MarR family transcriptional regulator compare
RR42_RS00035 +0.7 2.1 hypothetical protein compare
RR42_RS10440 +0.7 1.5 heat-shock protein compare
RR42_RS27550 +0.7 0.7 hypothetical protein compare
RR42_RS00385 +0.7 1.5 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
RR42_RS01900 +0.7 1.8 membrane protein compare
RR42_RS10855 +0.7 0.7 diguanylate phosphodiesterase compare
RR42_RS31600 +0.7 1.4 hypothetical protein compare
RR42_RS08990 +0.7 2.5 DNA polymerase compare
RR42_RS26995 +0.7 1.2 iron transporter compare
RR42_RS06775 +0.7 2.0 hypothetical protein compare
RR42_RS07090 +0.7 0.7 hypothetical protein compare
RR42_RS23010 +0.7 3.0 hypothetical protein compare
RR42_RS22570 +0.7 1.5 SAM-dependent methyltransferase compare
RR42_RS34925 +0.7 2.3 aldehyde dehydrogenase compare
RR42_RS05810 +0.7 1.1 RNA polymerase sigma factor compare
RR42_RS22990 +0.7 1.7 23S ribosomal RNA compare
RR42_RS29425 +0.7 2.4 enoyl-CoA hydratase compare
RR42_RS08690 +0.7 1.6 hypothetical protein compare
RR42_RS36300 +0.7 3.2 IclR family transcriptional regulator compare
RR42_RS29980 +0.7 1.4 transposase compare
RR42_RS03110 +0.7 2.5 pilus assembly protein TapA compare
RR42_RS16545 +0.7 2.3 prolyl-tRNA synthetase compare
RR42_RS29120 +0.7 2.2 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
RR42_RS13395 +0.7 2.8 hydrolase compare
RR42_RS07215 +0.7 1.3 hypothetical protein compare
RR42_RS34940 +0.7 1.7 bb3-type cytochrome oxidase subunit IV compare
RR42_RS06545 +0.7 1.1 thioesterase compare
RR42_RS32325 +0.7 2.0 magnesium chelatase compare
RR42_RS04350 +0.7 2.1 ABC transporter ATP-binding protein compare
RR42_RS00990 +0.7 1.8 GntR family transcriptional regulator compare
RR42_RS01680 +0.7 3.4 cytochrome C550 compare
RR42_RS30295 +0.7 1.9 ABC transporter substrate-binding protein compare
RR42_RS21005 +0.7 2.2 GDP-L-fucose synthase compare
RR42_RS31425 +0.7 1.6 chloroperoxidase compare
RR42_RS31950 +0.7 2.0 ketoacid CoA transferase compare
RR42_RS01085 +0.7 2.5 chemotaxis protein CheY compare
RR42_RS34965 +0.7 2.0 dioxygenase compare
RR42_RS01180 +0.7 2.0 acyl-CoA thioesterase compare
RR42_RS34270 +0.7 3.0 Fis family transcriptional regulator compare
RR42_RS31065 +0.7 1.6 GntR family transcriptional regulator compare
RR42_RS36105 +0.7 1.1 MarR family transcriptional regulator compare
RR42_RS18605 +0.7 1.2 sugar ABC transporter permease compare
RR42_RS34435 +0.7 2.8 transferase compare
RR42_RS05895 +0.7 1.1 rhombosortase compare
RR42_RS20890 +0.7 2.2 phosphatase compare
RR42_RS33610 +0.7 1.0 ABC transporter ATP-binding protein compare
RR42_RS10515 +0.7 1.4 fumarylacetoacetate hydrolase compare
RR42_RS24805 +0.7 2.6 thiolase compare
RR42_RS09595 +0.7 1.8 histidine kinase compare
RR42_RS02730 +0.7 1.5 tRNA-dihydrouridine synthase B compare
RR42_RS17970 +0.7 0.7 hypothetical protein compare
RR42_RS27050 +0.7 1.3 transporter compare
RR42_RS14755 +0.7 1.4 hypothetical protein compare
RR42_RS24820 +0.7 1.5 hypothetical protein compare
RR42_RS28585 +0.7 2.6 molybdenum ABC transporter substrate-binding protein compare
RR42_RS05930 +0.7 1.7 RNA-binding protein S4 compare
RR42_RS17255 +0.7 1.7 ABC transporter permease compare
RR42_RS24980 +0.7 1.0 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS37045 +0.7 0.8 thiamine biosynthesis protein ApbE compare
RR42_RS09360 +0.7 1.7 alpha/beta hydrolase compare
RR42_RS02470 +0.7 1.2 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS26580 +0.7 1.0 hypothetical protein compare
RR42_RS01095 +0.7 1.0 membrane protein compare
RR42_RS10980 +0.7 1.6 hydroxypyruvate isomerase compare
RR42_RS12375 +0.6 1.8 LysR family transcriptional regulator compare
RR42_RS15110 +0.6 1.9 NADH pyrophosphatase compare
RR42_RS27280 +0.6 1.7 hypothetical protein compare
RR42_RS07780 +0.6 1.8 hypothetical protein compare
RR42_RS05965 +0.6 1.0 malonic semialdehyde reductase compare
RR42_RS23415 +0.6 1.5 4-carboxymuconolactone decarboxylase compare
RR42_RS06835 +0.6 2.7 recombinase RdgC compare
RR42_RS20095 +0.6 1.2 peroxiredoxin compare
RR42_RS22230 +0.6 0.7 hypothetical protein compare
RR42_RS10110 +0.6 2.2 phosphonate ABC transporter substrate-binding protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Paraquat dichloride in Cupriavidus basilensis FW507-4G11

For stress Paraquat dichloride across organisms