Experiment set1IT005 for Caulobacter crescentus NA1000

Compare to:

D-Raffinose pentahydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02132 +4.6 16.8 LacI-family transcriptional regulator compare
CCNA_02646 +3.6 6.7 cell division protein MraZ compare
CCNA_01851 +3.1 22.7 quinol cytochrome oxidase polypeptide II compare
CCNA_01848 +3.0 17.0 quinol cytochrome oxidase polypeptide IV compare
CCNA_03280 +2.9 22.5 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02030 +2.7 12.5 hypothetical protein compare
CCNA_02026 +2.7 10.0 hypothetical protein compare
CCNA_01840 +2.6 21.6 MerR-family transcriptional regulator compare
CCNA_01849 +2.6 13.2 quinol cytochrome oxidase polypeptide III compare
CCNA_01850 +2.6 18.4 quinol cytochrome oxidase polypeptide I compare
CCNA_00518 +2.5 17.3 LSU ribosomal protein L25P compare
CCNA_03808 +2.5 13.8 organic solvent resistance transport system Ttg2C protein compare
CCNA_00699 +2.5 11.1 LSU ribosomal protein L28P compare
CCNA_00264 +2.4 16.0 C4-dicarboxylate transport protein compare
CCNA_02644 +2.4 7.2 cell division protein FtsL compare
CCNA_01573 +2.4 11.2 ArsR-family transcriptional regulator compare
CCNA_01684 +2.4 10.8 phenylalanine-4-hydroxylase compare
CCNA_02021 +2.4 11.1 hypothetical protein compare
CCNA_02957 +2.4 8.0 ArsR-family transcriptional regulator compare
CCNA_01712 +2.3 16.9 CopY/TcrY family transcriptional repressor compare
CCNA_03951 +2.3 10.0 hypothetical protein compare
CCNA_01780 +2.3 16.8 exopolyphosphatase compare
CCNA_03643 +2.3 3.4 succinate dehydrogenase membrane anchor subunit compare
CCNA_01526 +2.3 7.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_03271 +2.3 14.6 methionine gamma-lyase compare
CCNA_02028 +2.3 2.8 NTF2 superfamily protein compare
CCNA_03064 +2.3 12.4 PadR-family transcriptional regulator compare
CCNA_00939 +2.3 8.2 MarR-family transcriptional regulator compare
CCNA_03012 +2.2 12.5 peroxiredoxin compare
CCNA_02103 +2.2 16.1 hypothetical protein compare
CCNA_01801 +2.2 9.3 hypothetical protein compare
CCNA_03289 +2.2 12.6 HicB-family RNA-binding protein compare
CCNA_01593 +2.2 12.5 Xaa-pro aminopeptidase compare
CCNA_02980 +2.2 13.9 tryptophan 2,3-dioxygenase compare
CCNA_02447 +2.2 14.9 PspA/IM30 family regulatory protein compare
CCNA_03287 +2.2 12.5 PadR-family transcriptional regulator compare
CCNA_03961 +2.2 6.3 hypothetical protein compare
CCNA_01094 +2.2 4.4 hypothetical protein compare
CCNA_01742 +2.2 9.1 hypothetical protein compare
CCNA_01913 +2.2 12.9 MarR-family transcriptional regulator compare
CCNA_00846 +2.2 17.5 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_01186 +2.1 8.2 hypothetical protein compare
CCNA_02004 +2.1 4.0 SOS-induced inhibitor of cell division SidA compare
CCNA_03524 +2.1 14.3 di-/tripeptide transporter compare
CCNA_03936 +2.1 5.1 hypothetical protein compare
CCNA_03989 +2.1 14.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01847 +2.1 14.2 cytochrome c oxidase assembly protein Surf1 compare
CCNA_R0037 +2.1 5.8 tRNA-Glu compare
CCNA_02025 +2.1 5.6 hypothetical protein compare
CCNA_03806 +2.1 12.2 outer membrane lipoprotein compare
CCNA_03252 +2.0 15.0 CopY/TcrY-family transcriptional regulator compare
CCNA_03479 +2.0 10.2 MarR-family transcriptional regulator compare
CCNA_00684 +2.0 5.2 anti-sigma factor, ChrR-family compare
CCNA_02619 +2.0 15.8 stomatin/prohibitin-related protein compare
CCNA_01802 +2.0 3.9 hypothetical protein compare
CCNA_02000 +2.0 1.7 SSU ribosomal protein S2P compare
CCNA_02066 +2.0 8.8 phytoene/squalene synthase family protein compare
CCNA_03123 +2.0 11.9 ArsR-family transcriptional regulator compare
CCNA_02617 +2.0 13.7 histidinol-phosphate aminotransferase compare
CCNA_02616 +2.0 11.7 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00447 +2.0 8.8 chemotaxis protein cheD compare
CCNA_03810 +2.0 11.7 organic solvent resistance transport system ATP-binding protein compare
CCNA_02942 +2.0 4.3 nucleoside-diphosphate-sugar epimerase compare
CCNA_02416 +2.0 10.0 DNA-binding protein HU compare
CCNA_03807 +1.9 9.8 organic solvent resistance transport system Ttg2D protein compare
CCNA_02448 +1.9 12.0 hypothetical protein compare
CCNA_00895 +1.9 11.6 hypothetical protein compare
CCNA_03325 +1.9 6.7 hypothetical protein compare
CCNA_01220 +1.9 6.5 7-keto-8-aminopelargonate synthetase compare
CCNA_03108 +1.9 13.5 TonB-dependent outer membrane receptor compare
CCNA_01790 +1.9 6.8 protein translocase subunit secG compare
CCNA_03612 +1.9 11.1 HTH XRE-family transcriptional regulator compare
CCNA_01804 +1.9 10.6 glutathione peroxidase compare
CCNA_01690 +1.9 6.6 MAPEG family membrane protein compare
CCNA_01619 +1.9 9.5 NYN domain protein compare
CCNA_00107 +1.9 5.3 Trm112p-like protein compare
CCNA_03689 +1.9 12.6 alanine dehydrogenase compare
CCNA_01181 +1.9 8.7 hypothetical protein compare
CCNA_03824 +1.9 12.5 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_00847 +1.9 9.3 leucine-responsive regulatory protein compare
CCNA_01453 +1.9 5.1 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01752 +1.9 9.6 YicC-family protein compare
CCNA_00028 +1.9 7.4 TonB-dependent receptor compare
CCNA_01739 +1.9 9.6 LSU ribosomal protein L9P compare
CCNA_03809 +1.9 6.6 organic solvent resistance transport system permease compare
CCNA_01679 +1.8 10.4 succinylglutamic semialdehyde dehydrogenase compare
CCNA_00296 +1.8 10.0 phosphate regulon response regulator PhoB compare
CCNA_02330 +1.8 6.6 hypothetical protein compare
CCNA_01942 +1.8 8.1 Rrf2 family protein compare
CCNA_01931 +1.8 9.7 TetR-family transcriptional regulator compare
CCNA_03062 +1.8 10.1 cell wall hydrolase family protein compare
CCNA_02576 +1.8 10.3 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01681 +1.8 6.2 RimI-like acetyltransferase compare
CCNA_03519 +1.8 7.2 PadR-family transcriptional regulator compare
CCNA_03214 +1.8 8.9 hypothetical protein compare
CCNA_01525 +1.8 8.2 flagellar biosynthesis repressor flbT compare
CCNA_02367 +1.8 12.3 CelR-family transcriptional regulator compare
CCNA_01242 +1.8 15.4 amino acid permease compare
CCNA_01728 +1.8 8.2 short chain dehydrogenase compare
CCNA_03129 +1.7 10.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00769 +1.7 8.1 TetR family transcriptional regulator compare
CCNA_02339 +1.7 10.1 methyltransferase compare
CCNA_01528 +1.7 9.3 flagellin fljK compare
CCNA_00292 +1.7 3.8 phosphate transport system permease protein pstC compare
CCNA_00756 +1.7 4.5 hypothetical protein compare
CCNA_00947 +1.7 12.2 flagellar hook protein FlgE compare
CCNA_01655 +1.7 7.1 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00998 +1.7 8.1 ROS/MUCR transcriptional regulator compare
CCNA_01608 +1.7 7.4 TetR-family transcriptional regulator compare
CCNA_03372 +1.7 4.4 bacterioferritin-associated ferredoxin compare
CCNA_01680 +1.7 9.1 succinylarginine dihydrolase compare
CCNA_00161 +1.7 8.8 hypothetical protein compare
CCNA_03089 +1.7 7.6 hypothetical protein compare
CCNA_02151 +1.7 5.8 exodeoxyribonuclease VII small subunit compare
CCNA_02324 +1.7 10.4 heat shock protein 33 hsp33 compare
CCNA_00527 +1.7 8.7 hypothetical protein compare
CCNA_03400 +1.7 3.5 hypothetical protein compare
CCNA_00448 +1.7 9.0 cheU protein compare
CCNA_02760 +1.7 3.3 hypothetical protein compare
CCNA_01751 +1.7 6.0 aminodeoxychorismate lyase compare
CCNA_03964 +1.7 2.9 hypothetical protein compare
CCNA_R0054 +1.6 2.9 tRNA-Gly compare
CCNA_01173 +1.6 7.2 chorismate mutase compare
CCNA_02133 +1.6 8.9 glucokinase compare
CCNA_03762 +1.6 5.5 acetolactate synthase-related protein compare
CCNA_00944 +1.6 7.5 flagellar hook length determination protein compare
CCNA_01731 +1.6 6.4 colicin V production protein CvpA compare
CCNA_01505 +1.6 2.7 hypothetical protein compare
CCNA_00954 +1.6 11.3 AAA-family response regulator flbD compare
CCNA_00505 +1.6 6.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01677 +1.6 7.6 carboxypeptidase G2 precursor compare
CCNA_00441 +1.6 7.1 chemotaxis receiver domain protein cheYI compare
CCNA_01678 +1.6 8.0 arginine N-succinyltransferase, beta chain compare
CCNA_02728 +1.6 7.9 hypothetical protein compare
CCNA_01979 +1.6 6.7 LexA repressor compare
CCNA_02575 +1.6 5.2 hypothetical protein compare
CCNA_00446 +1.6 6.5 chemotaxis receiver domain protein cheYII compare
CCNA_01541 +1.6 10.6 LysR-family transcriptional regulator compare
CCNA_00705 +1.6 4.5 hypothetical protein compare
CCNA_00803 +1.6 5.7 chemotaxis protein cheW compare
CCNA_02287 +1.6 8.8 TetR-family transcriptional regulator compare
CCNA_00162 +1.6 7.5 hypothetical protein compare
CCNA_00400 +1.6 6.7 MarR/EmrR-family transcriptional regulator compare
CCNA_00675 +1.6 6.0 VapC-like PIN domain ribonuclease compare
CCNA_00945 +1.6 7.7 chemotaxis protein MotD compare
CCNA_00946 +1.6 7.1 Basal-body rod modification protein FlgD compare
CCNA_03043 +1.5 5.2 type IV pilin protein pilA compare
CCNA_00207 +1.5 7.2 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_00834 +1.5 6.2 flagellin FljM compare
CCNA_02164 +1.5 4.3 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_02273 +1.5 5.2 glutathione peroxidase compare
CCNA_02805 +1.5 6.8 hypothetical protein compare
CCNA_03688 +1.5 8.8 AsnC-family transcriptional regulator compare
CCNA_02976 +1.5 7.2 MCP-signal associated domain protein compare
CCNA_02467 +1.5 9.4 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01923 +1.5 7.4 ATP-dependent RNA helicase compare
CCNA_03893 +1.5 3.6 hypothetical protein compare
CCNA_03379 +1.5 2.7 Cro/CI family transcriptional regulator compare
CCNA_03030 +1.5 6.6 cytochrome c2 compare
CCNA_03740 +1.5 6.3 cysteine synthase compare
CCNA_03215 +1.5 8.6 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01926 +1.5 6.1 GGDEF diguanylate cyclase DgcB compare
CCNA_01827 +1.5 6.7 cobyric acid synthase CobQ compare
CCNA_00931 +1.5 10.0 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_01583 +1.5 2.8 phosphate-binding protein compare
CCNA_00929 +1.5 10.4 Riboflavin-specific deaminase family protein compare
CCNA_01393 +1.5 10.2 soluble lytic murein transglycosylase compare
CCNA_02434 +1.5 5.9 hypothetical protein compare
CCNA_01339 +1.5 5.7 ArsR-family transcriptional regulator compare
CCNA_00962 +1.5 7.5 MarR-family transcriptional regulator compare
CCNA_01008 +1.5 10.0 urocanate hydratase compare
CCNA_00443 +1.4 6.2 chemotaxis protein cheW compare
CCNA_03391 +1.4 8.4 Cro/CI family transcriptional regulator compare
CCNA_02073 +1.4 4.7 cupin domain transcriptional regulator compare
CCNA_03156 +1.4 6.6 putative periplasmic protein compare
CCNA_00129 +1.4 5.5 hypothetical protein compare
CCNA_03371 +1.4 5.5 bacterioferritin compare
CCNA_02567 +1.4 9.9 sensory transduction histidine kinase pleC compare
CCNA_03107 +1.4 7.2 cytidine deaminase compare
CCNA_00210 +1.4 10.4 TonB-dependent receptor compare
CCNA_03420 +1.4 8.4 hypothetical protein compare
CCNA_01057 +1.4 8.0 hypothetical protein compare
CCNA_02729 +1.4 10.4 oligopeptide transporter compare
CCNA_02363 +1.4 6.8 hypothetical protein compare
CCNA_00442 +1.4 10.5 chemotaxis histidine kinase protein cheAI compare
CCNA_02338 +1.4 7.9 hypothetical protein compare
CCNA_02910 +1.4 11.0 TonB-dependent receptor compare
CCNA_01059 +1.4 10.9 S-layer protein rsaA compare
CCNA_02067 +1.4 7.1 conserved membrane spanning protein compare
CCNA_01964 +1.4 3.3 NADH dehydrogenase compare
CCNA_02309 +1.4 4.6 EF hand domain protein compare
CCNA_00885 +1.4 6.8 MazE-like antitoxin protein compare
CCNA_03281 +1.4 11.8 AsnC-family transcriptional regulator compare
CCNA_00750 +1.4 8.7 FeaR-family transcriptional regulator compare
CCNA_00153 +1.4 4.7 adenine nucleotide exchange factor GrpE compare
CCNA_00440 +1.4 3.2 STAS domain protein compare
CCNA_03622 +1.4 7.2 beta-lactamase repressor compare
CCNA_00255 +1.4 3.0 esterase compare
CCNA_01575 +1.3 8.4 glucose / sorbosone dehydrogenase compare
CCNA_03811 +1.3 7.8 LysR-family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Raffinose pentahydrate in Caulobacter crescentus NA1000

For carbon source D-Raffinose pentahydrate across organisms