Experiment set1IT004 for Sinorhizobium meliloti 1021

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -10.1 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
SMc02838 -8.8 -6.1 phosphoglyceromutase compare
SMc02767 -8.6 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02766 -8.5 -11.6 tryptophan synthase subunit beta compare
SMc02899 -8.2 -8.0 prephenate dehydratase compare
SMc01843 -8.1 -7.9 5,10-methylenetetrahydrofolate reductase compare
SMc00235 -8.1 -5.6 anthranilate phosphoribosyltransferase compare
SMc00236 -8.0 -5.5 Indole-3-glycerol phosphate synthase compare
SMc00917 -7.8 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00711 -7.8 -5.4 cyclohexadienyl dehydrogenase compare
SMc02569 -7.7 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
SMc02717 -7.7 -5.3 2-isopropylmalate synthase compare
SMc01801 -7.7 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01726 -7.7 -7.5 acetylglutamate kinase compare
SMc03823 -7.5 -12.5 isopropylmalate isomerase large subunit compare
SMc01028 -7.4 -10.2 phosphopyruvate hydratase compare
SMc04026 -7.3 -8.7 glutamate synthase compare
SMc04405 -7.3 -10.1 3-isopropylmalate dehydrogenase compare
SMc01431 -7.3 -7.1 acetolactate synthase 3 catalytic subunit compare
SMc03797 -7.3 -10.0 homoserine O-succinyltransferase compare
SMc02137 -7.1 -4.9 ornithine carbamoyltransferase compare
SMc01494 -7.1 -12.8 phosphoserine phosphatase compare
SMc04045 -7.1 -6.9 dihydroxy-acid dehydratase compare
SMc00640 -7.0 -9.6 phosphoserine aminotransferase compare
SMc04028 -7.0 -12.6 glutamate synthase compare
SMc02725 -7.0 -12.5 anthranilate synthase compare
SMc04002 -6.8 -9.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00918 -6.8 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
SMc00494 -6.7 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00993 -6.7 -10.2 phosphoribosylamine--glycine ligase compare
SMc02765 -6.7 -15.2 tryptophan synthase subunit alpha compare
SMc02217 -6.5 -7.7 O-succinylhomoserine sulfhydrylase compare
SMc02570 -6.5 -7.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02562 -6.5 -8.9 phosphoenolpyruvate carboxykinase compare
SMc03776 -6.4 -4.4 gamma-glutamyl kinase compare
SMa1635 -6.4 -2.5 hypothetical protein compare
SMc00614 -6.4 -8.7 phosphoribosylglycinamide formyltransferase compare
SMc01360 -6.2 -4.2 aspartate carbamoyltransferase catalytic subunit compare
SMc01361 -6.1 -6.0 dihydroorotase compare
SMc03112 -6.1 -17.3 B12-dependent methionine synthase compare
SMc01004 -6.1 -8.5 phosphoribosyl-AMP cyclohydrolase compare
SMc03826 -6.1 -4.2 argininosuccinate synthase compare
SMc00293 -6.0 -11.1 homoserine dehydrogenase compare
SMc00554 -6.0 -9.1 amidophosphoribosyltransferase compare
SMc03777 -5.8 -8.9 gamma-glutamyl phosphate reductase compare
SMc02245 -5.8 -6.9 dihydroorotate dehydrogenase 2 compare
SMc00488 -5.7 -16.7 phosphoribosylformylglycinamidine synthase II compare
SMc03981 -5.6 -4.4 phosphoglycerate kinase compare
SMc02307 -5.6 -7.7 histidinol dehydrogenase compare
SMc02707 -5.6 -6.3 hypothetical protein compare
SMc03229 -5.5 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -5.5 -3.6 inosine 5'-monophosphate dehydrogenase compare
SMc04088 -5.5 -8.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SM_b20890 -5.5 -12.0 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
SMc00131 -5.4 -13.6 transcriptional regulator compare
SMc00092 -5.4 -14.7 phosphoadenosine phosphosulfate reductase compare
SMc01054 -5.4 -5.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc03979 -5.2 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00615 -5.2 -7.4 phosphoribosylaminoimidazole synthetase compare
SMc00876 -5.2 -7.1 ATP-binding MRP protein compare
SMc02574 -5.1 -7.3 imidazoleglycerol-phosphate dehydratase compare
SMc01880 -5.1 -3.5 pantoate--beta-alanine ligase compare
SMc00493 -5.0 -6.2 phosphoribosylformylglycinamidine synthase I compare
SMc00412 -5.0 -6.9 orotidine 5'-phosphate decarboxylase compare
SM_b20892 -5.0 -12.4 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) conserved
SMc02165 -5.0 -11.2 orotate phosphoribosyltransferase compare
SMc02123 -4.9 -5.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc03978 -4.9 -3.4 transketolase compare
SMc00495 -4.9 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc01215 -4.8 -3.3 carbamoyl phosphate synthase large subunit compare
SMc01569 -4.8 -2.5 carbamoyl phosphate synthase small subunit compare
SMc00641 -4.7 -7.0 D-3-phosphoglycerate dehydrogenase compare
SM_b21176 -4.7 -6.4 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02166 -4.7 -11.7 dihydroorotase compare
SMc02138 -4.7 -6.2 acetylornithine transaminase compare
SMc00091 -4.6 -14.4 sulfate adenylyltransferase compare
SMc02124 -4.5 -15.5 nitrite reductase compare
SMc00090 -4.5 -13.8 sulfate adenylyltransferase compare
SMc04001 -4.5 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03069 -4.4 -3.9 6-phosphogluconolactonase compare
SMc01770 -4.4 -2.0 serine hydroxymethyltransferase compare
SMc00588 -4.4 -3.5 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SM_b21177 -4.4 -9.8 phosphate uptake ABC transporter ATP-binding protein compare
SMc00017 -4.3 -2.3 homoserine kinase compare
SMc02246 -4.3 -1.7 hypothetical protein compare
SMc03763 -4.2 -4.1 cytosine-specific methyltransferase compare
SMc03795 -4.2 -2.3 isopropylmalate isomerase small subunit compare
SM_b20895 -4.2 -9.9 sugar uptake ABC transporter substrate-binding protein precursor conserved
SM_b21175 -4.2 -3.6 phosphate uptake ABC transporter permease compare
SM_b21174 -4.1 -6.7 phosphate uptake ABC transporter permease compare
SMc01053 -4.1 -5.5 siroheme synthase compare
SMc01881 -4.1 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02755 -4.1 -7.4 S-adenosyl-L-homocysteine hydrolase compare
SMc00296 -3.9 -14.0 POLY3-hydroxybutyrate polymerase compare
SMc00294 -3.9 -9.6 aminotransferase compare
SM_b20891 -3.7 -6.2 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
SMc04346 -3.6 -4.3 ketol-acid reductoisomerase compare
SMc00414 -3.4 -12.7 hypothetical protein compare
SMc01578 -3.3 -13.5 aspartate aminotransferase compare
SMc00302 -3.3 -4.8 hypothetical protein compare
SMc02724 -3.2 -4.5 hypothetical protein compare
SMc02975 -3.2 -8.0 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SM_b20894 -3.0 -5.3 L-arabinose ABC transporter, ATPase component (from data) compare
SMc01850 -3.0 -4.7 hypothetical protein compare
SMc03878 -2.8 -4.3 acetoacetyl-CoA reductase compare
SMc01206 -2.6 -2.4 queuine tRNA-ribosyltransferase compare
SM_b20893 -2.6 -9.2 sugar uptake ABC transporter permease conserved
SMc01441 -2.6 -5.0 membrane bound protease compare
SMc02983 -2.6 -6.9 ornithine, DAP, or arginine decarboxylase compare
SMc02683 -2.6 -2.9 hypothetical protein compare
SMc01440 -2.5 -6.2 hydrolase serine protease transmembrane protein compare
SMc01430 -2.5 -5.2 acetolactate synthase 3 regulatory subunit compare
SMc02147 -2.4 -9.2 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc01147 -2.3 -4.8 coproporphyrinogen III oxidase compare
SMc01124 -2.3 -6.5 PII uridylyl-transferase compare
SMc02906 -2.2 -1.2 hypothetical protein compare
SMc00712 -2.1 -2.3 hypothetical protein compare
SMc00053 -2.1 -1.4 monovalent cation/H+ antiporter subunit C compare
SM_b20293 -2.1 -1.0 hypothetical protein compare
SMc00580 -2.1 -3.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02659 -2.0 -7.4 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc02140 -2.0 -2.9 phosphate regulon transcriptional regulatory protein compare
SMc00295 -1.9 -2.0 hypothetical protein compare
SMc02142 -1.8 -5.7 phosphate transporter ATP-binding protein compare
SMc01043 -1.8 -8.0 nitrogen assimilation regulatory protein compare
SMc01368 -1.8 -4.8 transport transmembrane protein compare
SMc00914 -1.7 -5.1 oxidoreductase compare
SMc00334 -1.7 -2.1 cytidylate kinase compare
SMc00450 -1.7 -2.6 protoheme IX farnesyltransferase compare
SMc02047 -1.7 -5.7 glycine cleavage system aminomethyltransferase T compare
SMc00088 -1.7 -2.2 hypothetical protein compare
SMc00239 -1.7 -1.4 hypothetical protein compare
SMc02058 -1.6 -4.5 YAJC protein compare
SMc00619 -1.6 -1.7 hypothetical protein compare
SM_b20955 -1.6 -3.7 endo-beta-1,3-1,4-glycanase compare
SMc00859 -1.6 -1.8 hypothetical protein compare
SMc03100 -1.6 -1.4 hypothetical protein compare
SMc01041 -1.6 -2.0 NIFR3-like protein compare
SMc02582 -1.6 -3.6 hypothetical protein compare
SMc00762 -1.6 -7.9 glutamine synthetase compare
SMc00169 -1.6 -11.4 malic enzyme compare
SMc04244 -1.5 -4.9 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc01183 -1.5 -1.8 LexA repressor compare
SMc02833 -1.5 -2.3 penicillin-insensitive murein endopeptidase compare
SMc02144 -1.4 -3.6 phosphate ABC transporter permease compare
SMc02141 -1.4 -3.0 phosphate transporter PhoU compare
SMc01595 -1.4 -3.5 sensor histidine kinase transmembrane protein compare
SMc00726 -1.4 -1.0 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01939 -1.4 -1.4 urease subunit beta compare
SMc02451 -1.4 -1.7 hypothetical protein compare
SMc02049 -1.4 -10.8 glycine dehydrogenase compare
SMc02102 -1.3 -3.4 hypothetical protein compare
SMc01858 -1.3 -1.8 S-adenosyl-methyltransferase MraW compare
SMc02985 -1.3 -8.2 hypothetical protein compare
SMc01187 -1.3 -1.9 rare lipoprotein A compare
SMc00492 -1.3 -1.2 hypothetical protein compare
SMc01208 -1.3 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc00761 -1.3 -7.5 oxidoreductase compare
SMc02055 -1.3 -2.0 phytoene synthase compare
SMc00830 -1.3 -7.7 hypothetical protein conserved
SMc00982 -1.3 -5.0 dioxygenase compare
SMc00963 -1.3 -2.6 hypothetical protein compare
SMc02484 -1.3 -7.0 amino acid efflux transmembrane protein compare
SMc01568 -1.2 -1.4 hypothetical protein compare
SMc02048 -1.2 -4.9 glycine cleavage system protein H compare
SMc00821 -1.2 -1.7 hypothetical protein compare
SMa1138 -1.2 -5.3 hypothetical protein compare
SMc01852 -1.2 -6.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc04003 -1.2 -1.9 50S ribosomal protein L36 compare
SMa1570 -1.1 -1.7 PilA2 pilus assembly protein compare
SMc04330 -1.1 -2.6 trimethylamine methyltransferase compare
SMa0112 -1.1 -3.4 hypothetical protein compare
SM_b20323 -1.1 -1.1 transcriptional regulator compare
SMc02641 -1.1 -3.1 UDP-glucose 6-dehydrogenase compare
SMc00883 -1.1 -5.8 L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) (from data) compare
SMc02115 -1.1 -0.9 hypothetical protein compare
SMa0789 -1.1 -3.6 GntR family transcriptional regulator compare
SMc00361 -1.1 -2.8 hypothetical protein compare
SMc00511 -1.1 -4.7 D-ribulose-5-phosphate 3-epimerase compare
SMc01207 -1.1 -2.5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02978 -1.0 -4.0 hypothetical protein compare
SMc02753 -1.0 -1.4 PTS system transporter subunit IIA compare
SMc00073 -1.0 -1.9 hypothetical protein compare
SMa2281 -1.0 -2.4 hypothetical protein compare
SMc02685 -1.0 -2.8 hypothetical protein compare
SMa1095 -0.9 -0.9 hypothetical protein compare
SMc01042 -0.9 -3.6 nitrogen regulation protein compare
SMc01577 -0.9 -1.9 hypothetical protein compare
SMc02640 -0.9 -2.9 UDP-glucuronic acid epimerase compare
SMc00882 -0.9 -2.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
SMc02543 -0.9 -3.9 hypothetical protein compare
SM_b21213 -0.9 -4.1 serinethreonine protein phosphatase compare
SMc04243 -0.9 -4.6 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc03053 -0.9 -1.0 flagellar biosynthesis protein FliQ compare
SMc02232 -0.9 -1.9 hypothetical protein compare
SMc01342 -0.9 -3.7 hypothetical protein compare
SMc00647 -0.9 -2.7 ribosomal large subunit pseudouridine synthase compare
SMc02228 -0.9 -4.5 acetyl-CoA acetyltransferase compare
SM_b20948 -0.9 -1.4 glucosyltransferase compare
SMc04245 -0.9 -4.7 high-affinity zinc uptake system ABC transporter protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Arabinose in Sinorhizobium meliloti 1021

For carbon source L-Arabinose across organisms