Experiment set1IT004 for Burkholderia phytofirmans PsJN

Compare to:

L-Arabinose carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS18825 +1.6 6.6 flagellar biosynthesis protein FliP compare
BPHYT_RS18785 +1.5 3.4 flagellar assembly protein FliH compare
BPHYT_RS18935 +1.5 10.0 flagellar biosynthesis regulator FlhF compare
BPHYT_RS18900 +1.4 11.5 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS18945 +1.4 7.6 flagellar biosynthesis protein FlhB compare
BPHYT_RS18860 +1.4 5.3 flagellar P-ring protein FlgI compare
BPHYT_RS18895 +1.4 4.6 flagellar basal body rod protein FlgB compare
BPHYT_RS18880 +1.4 10.5 flagellar hook protein FlgE compare
BPHYT_RS08150 +1.3 1.7 membrane protein compare
BPHYT_RS18885 +1.3 8.6 flagellar basal body rod modification protein FlgD compare
BPHYT_RS18875 +1.3 5.0 flagellar basal body rod protein FlgF compare
BPHYT_RS18865 +1.3 2.8 flagellar L-ring protein FlgH compare
BPHYT_RS35310 +1.3 1.7 GCN5 family N-acetyltransferase compare
BPHYT_RS18835 +1.3 2.2 flagellar biosynthesis protein FliR compare
BPHYT_RS18940 +1.3 8.7 flagellar biosynthesis protein FlhA compare
BPHYT_RS18925 +1.2 9.5 RNA polymerase sigma70 compare
BPHYT_RS28075 +1.2 1.8 cytochrome B561 compare
BPHYT_RS18790 +1.2 5.9 ATP synthase compare
BPHYT_RS32860 +1.2 1.6 hypothetical protein compare
BPHYT_RS23385 +1.1 2.6 group 1 glycosyl transferase compare
BPHYT_RS21025 +1.1 1.7 cation-binding protein compare
BPHYT_RS18890 +1.1 4.4 flagellar basal body rod protein FlgC compare
BPHYT_RS32240 +1.1 1.6 chromosome replication initiation inhibitor protein compare
BPHYT_RS18830 +1.1 6.7 flagellar biosynthesis protein FliQ compare
BPHYT_RS28025 +1.1 2.2 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS18870 +1.1 5.4 flagellar basal body rod protein FlgG compare
BPHYT_RS18800 +1.1 6.4 flagellar hook-length control protein compare
BPHYT_RS18775 +1.1 8.1 flagellar M-ring protein FliF compare
BPHYT_RS18810 +1.1 6.2 flagellar motor switch protein FliM compare
BPHYT_RS30485 +1.1 1.3 ABC transporter ATP-binding protein compare
BPHYT_RS18795 +1.1 6.4 flagellar export protein FliJ compare
BPHYT_RS34410 +1.1 1.9 hypothetical protein compare
BPHYT_RS18855 +1.1 4.7 flagellar rod assembly protein FlgJ compare
BPHYT_RS18780 +1.0 3.6 flagellar motor switch protein FliG compare
BPHYT_RS10345 +1.0 1.4 flagellar motor protein MotB compare
BPHYT_RS12535 +1.0 1.4 membrane protein compare
BPHYT_RS13390 +1.0 1.4 IclR family transcriptional regulator compare
BPHYT_RS02770 +1.0 3.3 membrane protein compare
BPHYT_RS05905 +1.0 0.9 hypothetical protein compare
BPHYT_RS30945 +0.9 3.4 LacI family transcriptional regulator compare
BPHYT_RS04035 +0.9 3.4 transferase compare
BPHYT_RS25450 +0.9 1.4 membrane protein compare
BPHYT_RS26570 +0.9 1.3 5'-nucleotidase compare
BPHYT_RS25065 +0.9 1.6 glycine/betaine ABC transporter ATPase compare
BPHYT_RS30880 +0.9 2.4 peptidase S13 compare
BPHYT_RS14655 +0.9 5.1 Fis family transcriptional regulator compare
BPHYT_RS27560 +0.9 1.5 histidine kinase compare
BPHYT_RS20545 +0.9 1.3 hypothetical protein compare
BPHYT_RS23030 +0.9 1.4 gluconate 2-dehydrogenase compare
BPHYT_RS30825 +0.9 2.1 extradiol dioxygenase compare
BPHYT_RS08490 +0.9 2.6 Crp/Fnr family transcriptional regulator compare
BPHYT_RS22420 +0.9 1.4 membrane protein compare
BPHYT_RS16950 +0.9 4.6 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS27145 +0.9 2.4 TetR family transcriptional regulator compare
BPHYT_RS23430 +0.9 1.8 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS20880 +0.9 1.0 polyketide cyclase compare
BPHYT_RS01790 +0.9 7.0 LuxR family transcriptional regulator compare
BPHYT_RS27085 +0.8 2.0 alkylhydroperoxidase compare
BPHYT_RS14250 +0.8 5.2 glycosyl transferase compare
BPHYT_RS24755 +0.8 2.1 catalase compare
BPHYT_RS28360 +0.8 1.5 carboxymuconolactone decarboxylase compare
BPHYT_RS01795 +0.8 4.8 histidine kinase compare
BPHYT_RS34035 +0.8 2.1 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS22755 +0.8 4.4 LacI family transcription regulator compare
BPHYT_RS21445 +0.8 2.6 sugar ABC transporter ATP-binding protein compare
BPHYT_RS23395 +0.8 1.9 glycosyl transferase compare
BPHYT_RS24135 +0.8 4.0 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS29820 +0.8 2.0 hypothetical protein compare
BPHYT_RS04560 +0.8 1.9 Hcp1 family type VI secretion system effector compare
BPHYT_RS10715 +0.8 3.3 acyl-CoA dehydrogenase compare
BPHYT_RS18805 +0.8 4.4 flagellar basal body protein FliL compare
BPHYT_RS27195 +0.8 4.4 LacI family transcriptional regulator compare
BPHYT_RS04015 +0.8 1.9 glycosyl transferase compare
BPHYT_RS36585 +0.8 2.9 hypothetical protein compare
BPHYT_RS04885 +0.8 1.4 threonine-phosphate decarboxylase compare
BPHYT_RS09480 +0.8 0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS31020 +0.8 1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS16060 +0.8 2.7 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS03980 +0.8 3.0 mannose-1-phosphate guanyltransferase compare
BPHYT_RS04400 +0.8 1.6 Crp/Fnr family transcriptional regulator compare
BPHYT_RS36495 +0.8 1.7 peptidase compare
BPHYT_RS30415 +0.8 1.5 AraC family transcriptional regulator compare
BPHYT_RS08595 +0.8 2.5 multidrug transporter compare
BPHYT_RS01620 +0.8 5.0 sensor histidine kinase compare
BPHYT_RS34085 +0.8 2.0 polyamine ABC transporter permease compare
BPHYT_RS05395 +0.7 1.1 hypothetical protein compare
BPHYT_RS10995 +0.7 1.3 GntR family transcriptional regulator compare
BPHYT_RS04710 +0.7 1.2 hypothetical protein compare
BPHYT_RS33310 +0.7 2.9 epoxide hydrolase compare
BPHYT_RS03090 +0.7 0.7 hypothetical protein compare
BPHYT_RS09860 +0.7 1.0 pilus assembly protein PilP compare
BPHYT_RS23890 +0.7 1.8 MFS transporter compare
BPHYT_RS08385 +0.7 1.3 secretion protein compare
BPHYT_RS22325 +0.7 1.9 histidine kinase compare
BPHYT_RS07190 +0.7 1.9 acetyltransferase compare
BPHYT_RS34305 +0.7 2.1 succinate-semialdehyde dehydrogenase compare
BPHYT_RS02765 +0.7 2.4 cytochrome BD oxidase subunit I compare
BPHYT_RS02660 +0.7 1.0 membrane protein compare
BPHYT_RS07080 +0.7 2.2 glutathione S-transferase compare
BPHYT_RS12290 +0.7 1.5 universal stress protein UspA compare
BPHYT_RS23930 +0.7 1.1 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS13285 +0.7 1.3 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS03655 +0.7 1.1 membrane protein compare
BPHYT_RS22880 +0.7 1.7 hypothetical protein compare
BPHYT_RS27505 +0.7 2.6 hypothetical protein compare
BPHYT_RS13600 +0.7 1.3 thioesterase compare
BPHYT_RS24285 +0.7 1.7 TetR family transcriptional regulator compare
BPHYT_RS29620 +0.7 0.8 hypothetical protein compare
BPHYT_RS18980 +0.7 4.3 chemotaxis protein CheR compare
BPHYT_RS21505 +0.7 1.7 amidohydrolase compare
BPHYT_RS28280 +0.7 1.3 hypothetical protein compare
BPHYT_RS16505 +0.7 2.5 HAD family hydrolase compare
BPHYT_RS25770 +0.7 1.3 hypothetical protein compare
BPHYT_RS04120 +0.7 2.4 protein tyrosine kinase compare
BPHYT_RS10945 +0.7 1.2 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS32930 +0.7 1.6 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS26285 +0.7 2.6 glycogen debranching protein compare
BPHYT_RS06005 +0.7 2.1 chorismate--pyruvate lyase compare
BPHYT_RS23370 +0.7 1.3 glycosyl transferase family 1 compare
BPHYT_RS23600 +0.7 1.4 hypothetical protein compare
BPHYT_RS34920 +0.7 1.3 IclR family transcriptional regulator compare
BPHYT_RS14255 +0.7 5.2 ABC transporter compare
BPHYT_RS17490 +0.7 1.3 haloacid dehalogenase compare
BPHYT_RS28620 +0.7 1.2 enoyl-CoA hydratase compare
BPHYT_RS34770 +0.7 2.9 chemotaxis protein compare
BPHYT_RS10875 +0.7 1.4 transporter compare
BPHYT_RS22335 +0.6 3.7 cytochrome C biogenesis protein compare
BPHYT_RS08340 +0.6 0.9 chemotaxis protein CheY compare
BPHYT_RS07435 +0.6 1.1 amino acid transporter compare
BPHYT_RS21215 +0.6 3.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS33400 +0.6 2.2 magnesium transporter CorA compare
BPHYT_RS03450 +0.6 2.5 paraquat-inducible protein A compare
BPHYT_RS26050 +0.6 1.4 ABC transporter permease compare
BPHYT_RS01920 +0.6 4.3 AsnC family transcriptional regulator compare
BPHYT_RS31060 +0.6 1.0 capsular polysaccharide biosynthesis protein compare
BPHYT_RS30780 +0.6 2.3 GMC family oxidoreductase compare
BPHYT_RS07465 +0.6 1.5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS10850 +0.6 1.3 LysR family transcriptional regulator compare
BPHYT_RS05825 +0.6 1.5 hypothetical protein compare
BPHYT_RS28880 +0.6 1.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS05520 +0.6 2.0 transcriptional regulator compare
BPHYT_RS15145 +0.6 1.0 3-oxoacyl-ACP synthase compare
BPHYT_RS02300 +0.6 1.0 acid shock protein compare
BPHYT_RS25630 +0.6 1.2 glutathione S-transferase compare
BPHYT_RS15490 +0.6 2.7 coproporphyrinogen III oxidase compare
BPHYT_RS11640 +0.6 0.8 hypothetical protein compare
BPHYT_RS05085 +0.6 1.4 LysR family transcriptional regulator compare
BPHYT_RS01170 +0.6 1.1 hypothetical protein compare
BPHYT_RS03455 +0.6 0.9 paraquat-inducible protein A compare
BPHYT_RS11970 +0.6 0.9 cupin compare
BPHYT_RS28875 +0.6 2.6 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS06865 +0.6 3.4 MerR family transcriptional regulator compare
BPHYT_RS20715 +0.6 1.3 peptidase compare
BPHYT_RS14505 +0.6 1.3 membrane protein compare
BPHYT_RS14070 +0.6 1.3 hypothetical protein compare
BPHYT_RS02435 +0.6 0.9 hypothetical protein compare
BPHYT_RS06485 +0.6 1.7 globin compare
BPHYT_RS13420 +0.6 2.1 hypothetical protein compare
BPHYT_RS25970 +0.6 0.8 urea amidolyase compare
BPHYT_RS28770 +0.6 1.1 aldehyde dehydrogenase compare
BPHYT_RS16335 +0.6 0.7 membrane protein compare
BPHYT_RS10650 +0.6 0.9 membrane protein compare
BPHYT_RS11455 +0.6 1.6 manganese transporter compare
BPHYT_RS00790 +0.6 1.7 conjugal transfer protein TraF compare
BPHYT_RS26415 +0.6 1.2 glutathione S-transferase compare
BPHYT_RS10230 +0.6 1.9 hypothetical protein compare
BPHYT_RS18970 +0.6 4.2 chemotaxis protein compare
BPHYT_RS08590 +0.6 3.3 hypothetical protein compare
BPHYT_RS23155 +0.6 0.8 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS34500 +0.6 1.8 hypothetical protein compare
BPHYT_RS11140 +0.6 1.9 major facilitator transporter compare
BPHYT_RS34210 +0.6 2.5 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) compare
BPHYT_RS02760 +0.6 1.6 cytochrome BD oxidase subunit II compare
BPHYT_RS32595 +0.6 1.7 hypothetical protein compare
BPHYT_RS03740 +0.6 1.2 hypothetical protein compare
BPHYT_RS29035 +0.6 1.2 arsenic transporter compare
BPHYT_RS05525 +0.6 2.0 sensor histidine kinase compare
BPHYT_RS15545 +0.6 2.0 isoaspartyl peptidase compare
BPHYT_RS08235 +0.6 0.8 nucleoprotein, Hfg, host factor I compare
BPHYT_RS22030 +0.6 0.9 peptide ABC transporter ATP-binding protein compare
BPHYT_RS16130 +0.6 2.3 cation ABC transporter substrate-binding protein compare
BPHYT_RS31475 +0.6 1.9 hypothetical protein compare
BPHYT_RS15800 +0.6 1.9 GntR family transcriptional regulator compare
BPHYT_RS09735 +0.6 1.2 glycosyl transferase compare
BPHYT_RS00170 +0.5 2.6 lysine transporter LysE compare
BPHYT_RS04055 +0.5 2.3 PST family polysaccharide export protein compare
BPHYT_RS34235 +0.5 1.4 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS28320 +0.5 1.3 molecular chaperone DnaJ compare
BPHYT_RS36035 +0.5 1.0 hypothetical protein compare
BPHYT_RS17370 +0.5 2.3 membrane protein compare
BPHYT_RS28705 +0.5 1.0 IclR family transcriptional regulator compare
BPHYT_RS35230 +0.5 1.1 type 11 methyltransferase compare
BPHYT_RS33040 +0.5 2.1 hypothetical protein compare
BPHYT_RS14340 +0.5 3.8 Fis family transcriptional regulator compare
BPHYT_RS30795 +0.5 0.5 short-chain dehydrogenase compare
BPHYT_RS23270 +0.5 0.9 enoyl-CoA hydratase compare
BPHYT_RS35345 +0.5 2.5 decarboxylase UbiD compare
BPHYT_RS09565 +0.5 0.7 acetyl-CoA acetyltransferase compare
BPHYT_RS22560 +0.5 1.6 flagellar transcriptional regulator FlhD compare
BPHYT_RS13465 +0.5 1.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Arabinose in Burkholderia phytofirmans PsJN

For carbon source L-Arabinose across organisms