Experiment set1IT003 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Temperature shift 30_to_25

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS21795 +1.6 14.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS26515 +1.6 14.1 AMP nucleosidase compare
PFLU_RS01610 +1.5 9.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS14775 +1.5 2.6 enoyl-CoA hydratase compare
PFLU_RS03100 +1.4 3.0 hypothetical protein compare
PFLU_RS08490 +1.4 1.0 DEAD/DEAH box helicase compare
PFLU_RS22455 +1.3 8.9 hypothetical protein compare
PFLU_RS01895 +1.3 5.7 phosphoribosyl-ATP diphosphatase compare
PFLU_RS03585 +1.3 2.1 hypothetical protein compare
PFLU_RS25955 +1.3 1.9 hypothetical protein compare
PFLU_RS09190 +1.3 2.0 hypothetical protein compare
PFLU_RS22520 +1.3 4.4 GntR family transcriptional regulator compare
PFLU_RS14715 +1.3 5.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS12260 +1.3 1.6 hypothetical protein compare
PFLU_RS29780 +1.3 5.9 acyl-CoA thioesterase compare
PFLU_RS16025 +1.2 3.6 flavin-dependent monooxygenase compare
PFLU_RS21855 +1.2 7.6 flagellar basal-body rod protein FlgG compare
PFLU_RS00435 +1.2 8.1 PAS domain-containing protein compare
PFLU_RS31530 +1.2 1.2 transposase compare
PFLU_RS02690 +1.1 1.8 hypothetical protein compare
PFLU_RS21735 +1.1 7.2 flagellar hook-length control protein FliK compare
PFLU_RS21710 +1.1 5.6 flagellar type III secretion system pore protein FliP compare
PFLU_RS31840 +1.1 1.6 hypothetical protein compare
PFLU_RS10045 +1.1 2.6 hypothetical protein compare
PFLU_RS12915 +1.1 3.3 methyltransferase domain-containing protein compare
PFLU_RS30630 +1.1 1.5 hypothetical protein compare
PFLU_RS14335 +1.1 3.0 ABC transporter permease compare
PFLU_RS21780 +1.0 2.8 flagellar hook-basal body complex protein FliE compare
PFLU_RS24860 +1.0 2.5 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS21700 +1.0 5.7 flagellar type III secretion system protein FliR compare
PFLU_RS01475 +1.0 8.3 UDP-forming cellulose synthase catalytic subunit compare
PFLU_RS03575 +1.0 2.9 hypothetical protein compare
PFLU_RS20330 +1.0 2.6 cold-shock protein compare
PFLU_RS29765 +1.0 8.6 ABC transporter permease subunit compare
PFLU_RS28315 +1.0 1.3 response regulator compare
PFLU_RS31010 +1.0 1.2 transposase compare
PFLU_RS12070 +1.0 3.9 hypothetical protein compare
PFLU_RS21725 +1.0 5.7 flagellar motor switch protein FliM compare
PFLU_RS21845 +1.0 5.2 flagellar basal body P-ring protein FlgI compare
PFLU_RS21705 +1.0 5.6 flagellar biosynthesis protein FliQ compare
PFLU_RS20025 +0.9 2.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS29810 +0.9 5.3 LysR family transcriptional regulator compare
PFLU_RS23175 +0.9 5.8 flagellar basal body rod protein FlgC compare
PFLU_RS21760 +0.9 6.7 flagellar protein export ATPase FliI compare
PFLU_RS29755 +0.9 6.7 phosphate ABC transporter ATP-binding protein compare
PFLU_RS28265 +0.9 1.6 malonate decarboxylase subunit delta compare
PFLU_RS21660 +0.9 6.5 RNA polymerase sigma factor FliA compare
PFLU_RS21695 +0.9 4.1 flagellar biosynthesis protein FlhB compare
PFLU_RS23195 +0.9 7.2 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS13945 +0.9 1.4 hypothetical protein compare
PFLU_RS01490 +0.9 7.7 cellulose biosynthesis protein BcsC compare
PFLU_RS23180 +0.9 5.5 flagellar basal body rod protein FlgB compare
PFLU_RS24670 +0.9 1.5 HigA family addiction module antidote protein compare
PFLU_RS00460 +0.9 5.7 glutamate/aspartate:proton symporter GltP compare
PFLU_RS21835 +0.9 7.2 flagellar hook-associated protein FlgK compare
PFLU_RS05210 +0.9 1.7 HU family DNA-binding protein compare
PFLU_RS15110 +0.9 2.2 aldehyde dehydrogenase family protein compare
PFLU_RS21830 +0.9 7.4 flagellar hook-associated protein 3 compare
PFLU_RS01480 +0.9 7.3 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
PFLU_RS23165 +0.8 7.4 flagellar hook protein FlgE compare
PFLU_RS09480 +0.8 1.6 hypothetical protein compare
PFLU_RS22470 +0.8 1.7 hypothetical protein compare
PFLU_RS21675 +0.8 7.0 flagellar biosynthesis protein FlhA compare
PFLU_RS21850 +0.8 6.2 flagellar basal body L-ring protein FlgH compare
PFLU_RS23325 +0.8 4.8 GlxA family transcriptional regulator compare
PFLU_RS21860 +0.8 4.6 flagellar basal body rod protein FlgF compare
PFLU_RS20400 +0.8 3.4 hypothetical protein compare
PFLU_RS05720 +0.8 5.7 OmpA family protein compare
PFLU_RS00870 +0.8 1.7 hypothetical protein compare
PFLU_RS10035 +0.8 3.3 metal ABC transporter ATP-binding protein compare
PFLU_RS31475 +0.8 2.2 hypothetical protein compare
PFLU_RS20715 +0.8 1.6 iron ABC transporter permease compare
PFLU_RS28080 +0.8 1.9 hypothetical protein compare
PFLU_RS22770 +0.8 2.4 DUF2784 domain-containing protein compare
PFLU_RS20290 +0.8 1.0 integration host factor subunit alpha compare
PFLU_RS21765 +0.8 3.6 flagellar assembly protein FliH compare
PFLU_RS31415 +0.8 2.9 hypothetical protein compare
PFLU_RS25040 +0.8 2.0 DUF3077 domain-containing protein compare
PFLU_RS13580 +0.8 2.6 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS17855 +0.8 2.0 YjbF family lipoprotein compare
PFLU_RS30470 +0.8 1.8 addiction module antidote protein compare
PFLU_RS30615 +0.8 1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS23895 +0.8 1.2 DUF1289 domain-containing protein compare
PFLU_RS24980 +0.8 1.6 purine-binding chemotaxis protein CheW compare
PFLU_RS07540 +0.8 2.1 class II glutamine amidotransferase compare
PFLU_RS17390 +0.8 2.0 DUF4880 domain-containing protein compare
PFLU_RS22535 +0.7 5.4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS21215 +0.7 0.4 YheU family protein compare
PFLU_RS21755 +0.7 3.9 flagella biosynthesis chaperone FliJ compare
PFLU_RS00040 +0.7 5.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS10995 +0.7 1.7 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03265 +0.7 3.5 zinc-binding alcohol dehydrogenase family protein compare
PFLU_RS12725 +0.7 1.7 GNAT family N-acetyltransferase compare
PFLU_RS23205 +0.7 4.6 flagellar protein FlgN compare
PFLU_RS21810 +0.7 6.1 flagellar filament capping protein FliD compare
PFLU_RS29480 +0.7 3.1 exodeoxyribonuclease III compare
PFLU_RS30290 +0.7 2.7 hypothetical protein compare
PFLU_RS01470 +0.7 4.0 cellulose synthase operon protein YhjQ compare
PFLU_RS01665 +0.7 1.0 glutaredoxin 3 compare
PFLU_RS18175 +0.7 1.7 sugar ABC transporter substrate-binding protein compare
PFLU_RS21840 +0.7 3.9 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS30345 +0.7 1.4 DUF2559 family protein compare
PFLU_RS02180 +0.7 1.1 thioredoxin TrxC compare
PFLU_RS25680 +0.7 2.5 TfoX/Sxy family protein compare
PFLU_RS29770 +0.7 4.8 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS17380 +0.7 2.2 DUF924 family protein compare
PFLU_RS11090 +0.7 3.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS00060 +0.7 1.6 DNA-3-methyladenine glycosylase I compare
PFLU_RS25355 +0.7 2.6 CreA family protein compare
PFLU_RS01625 +0.7 1.1 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS14560 +0.7 2.0 DNA-binding protein compare
PFLU_RS02410 +0.7 1.9 multidrug efflux SMR transporter compare
PFLU_RS21770 +0.7 3.4 flagellar motor switch protein FliG compare
PFLU_RS00405 +0.7 2.7 cytochrome c5 family protein compare
PFLU_RS29350 +0.7 2.6 xanthine phosphoribosyltransferase compare
PFLU_RS12580 +0.7 3.5 MurR/RpiR family transcriptional regulator compare
PFLU_RS31310 +0.7 1.6 phage tail protein compare
PFLU_RS24865 +0.6 2.2 serine O-acetyltransferase compare
PFLU_RS26180 +0.6 4.6 energy-dependent translational throttle protein EttA compare
PFLU_RS30645 +0.6 1.8 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS21730 +0.6 4.1 flagellar basal body-associated protein FliL compare
PFLU_RS08255 +0.6 2.1 hypothetical protein compare
PFLU_RS15795 +0.6 1.3 hypothetical protein compare
PFLU_RS11745 +0.6 3.2 xylose isomerase compare
PFLU_RS30985 +0.6 1.6 hypothetical protein compare
PFLU_RS19900 +0.6 1.1 general secretion pathway protein GspM compare
PFLU_RS17160 +0.6 1.2 hypothetical protein compare
PFLU_RS03830 +0.6 1.1 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS10405 +0.6 1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS06630 +0.6 1.4 ABC transporter ATP-binding protein compare
PFLU_RS22190 +0.6 0.7 hypothetical protein compare
PFLU_RS28395 +0.6 3.0 DUF4426 domain-containing protein compare
PFLU_RS02760 +0.6 3.1 N-acylglucosamine 2-epimerase compare
PFLU_RS23865 +0.6 1.4 pentapeptide repeat-containing protein compare
PFLU_RS01175 +0.6 2.5 ATP-binding cassette domain-containing protein compare
PFLU_RS08485 +0.6 0.6 crotonase/enoyl-CoA hydratase family protein compare
PFLU_RS29290 +0.6 1.8 hypothetical protein compare
PFLU_RS19225 +0.6 2.5 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS09670 +0.6 0.8 integrating conjugative element protein compare
PFLU_RS02670 +0.6 1.7 hypothetical protein compare
PFLU_RS24560 +0.6 3.4 site-specific tyrosine recombinase XerD compare
PFLU_RS19745 +0.6 1.5 acetylornithine deacetylase compare
PFLU_RS17005 +0.6 1.8 tRNA hydroxylase compare
PFLU_RS02275 +0.6 0.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS17110 +0.6 1.8 DUF58 domain-containing protein compare
PFLU_RS28305 +0.6 2.5 purine-binding chemotaxis protein CheW compare
PFLU_RS18275 +0.6 2.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21670 +0.6 3.8 flagellar biosynthesis protein FlhF compare
PFLU_RS09960 +0.6 2.1 DUF1232 domain-containing protein compare
PFLU_RS17105 +0.6 2.1 MoxR family ATPase compare
PFLU_RS00210 +0.6 0.9 OsmC family protein compare
PFLU_RS01680 +0.6 2.2 hypothetical protein compare
PFLU_RS00245 +0.6 2.5 YheV family putative metal-binding protein compare
PFLU_RS14690 +0.5 1.5 hypothetical protein compare
PFLU_RS14235 +0.5 1.7 iron transporter compare
PFLU_RS00430 +0.5 3.6 N-acetylmuramoyl-L-alanine amidase compare
PFLU_RS20960 +0.5 1.2 hypothetical protein compare
PFLU_RS21805 +0.5 3.8 flagellar export chaperone FliS compare
PFLU_RS15310 +0.5 0.6 YgdI/YgdR family lipoprotein compare
PFLU_RS17130 +0.5 1.5 protein BatD compare
PFLU_RS02175 +0.5 1.8 hypothetical protein compare
PFLU_RS19120 +0.5 1.7 MarR family transcriptional regulator compare
PFLU_RS23005 +0.5 3.4 DUF4823 domain-containing protein compare
PFLU_RS01500 +0.5 1.3 cell division protein FtsQ compare
PFLU_RS03160 +0.5 1.9 tetratricopeptide repeat protein compare
PFLU_RS27580 +0.5 1.0 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS12655 +0.5 1.5 hypothetical protein compare
PFLU_RS28860 +0.5 2.1 acetylornithine deacetylase compare
PFLU_RS03170 +0.5 2.0 type II secretion system F family protein compare
PFLU_RS25135 +0.5 0.9 hypothetical protein compare
PFLU_RS00360 +0.5 2.9 hypothetical protein compare
PFLU_RS22185 +0.5 1.5 hypothetical protein compare
PFLU_RS21775 +0.5 3.6 flagellar basal body M-ring protein FliF compare
PFLU_RS08280 +0.5 1.2 hypothetical protein compare
PFLU_RS15295 +0.5 2.2 alpha/beta hydrolase compare
PFLU_RS31740 +0.5 2.0 hypothetical protein compare
PFLU_RS19750 +0.5 2.0 FAD-binding oxidoreductase compare
PFLU_RS28210 +0.5 1.3 RidA family protein compare
PFLU_RS18410 +0.5 2.0 response regulator compare
PFLU_RS26565 +0.5 0.9 rRNA maturation RNase YbeY compare
PFLU_RS08760 +0.5 1.0 phosphonate C-P lyase system protein PhnG compare
PFLU_RS04840 +0.5 1.3 SDR family oxidoreductase compare
PFLU_RS00485 +0.5 1.8 ABC transporter permease compare
PFLU_RS22040 +0.5 2.6 NlpC/P60 family protein compare
PFLU_RS30555 +0.5 1.1 hypothetical protein compare
PFLU_RS15950 +0.5 1.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
PFLU_RS22875 +0.5 1.2 hypothetical protein compare
PFLU_RS03555 +0.5 0.5 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS08125 +0.5 1.1 integration host factor subunit beta compare
PFLU_RS24175 +0.5 2.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
PFLU_RS05655 +0.5 1.2 DeoR/GlpR family transcriptional regulator compare
PFLU_RS00395 +0.5 3.7 DNA polymerase I compare
PFLU_RS20860 +0.5 2.0 LysR family transcriptional regulator compare
PFLU_RS19275 +0.5 1.4 copper homeostasis membrane protein CopD compare
PFLU_RS17930 +0.5 2.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
PFLU_RS00875 +0.5 1.2 hypothetical protein compare
PFLU_RS18865 +0.5 1.5 Na+/H+ antiporter subunit G compare
PFLU_RS13775 +0.5 1.8 hypothetical protein compare
PFLU_RS09515 +0.5 2.2 TIGR03751 family conjugal transfer lipoprotein compare
PFLU_RS10555 +0.5 1.5 PhzF family phenazine biosynthesis protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in temperature shift experiments

For temperature shift D-Glucose across organisms