Experiment set1IT003 for Caulobacter crescentus NA1000

Compare to:

D-Maltose monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01848 +2.4 13.1 quinol cytochrome oxidase polypeptide IV compare
CCNA_01851 +2.4 17.3 quinol cytochrome oxidase polypeptide II compare
CCNA_01850 +2.2 15.0 quinol cytochrome oxidase polypeptide I compare
CCNA_00684 +2.1 8.6 anti-sigma factor, ChrR-family compare
CCNA_01712 +2.1 13.5 CopY/TcrY family transcriptional repressor compare
CCNA_02103 +2.1 7.1 hypothetical protein compare
CCNA_02646 +2.1 3.3 cell division protein MraZ compare
CCNA_01840 +2.1 14.7 MerR-family transcriptional regulator compare
CCNA_01849 +2.0 11.5 quinol cytochrome oxidase polypeptide III compare
CCNA_01979 +2.0 9.9 LexA repressor compare
CCNA_01790 +2.0 6.8 protein translocase subunit secG compare
CCNA_02000 +1.9 2.5 SSU ribosomal protein S2P compare
CCNA_02644 +1.9 5.5 cell division protein FtsL compare
CCNA_00505 +1.9 8.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_01804 +1.8 10.3 glutathione peroxidase compare
CCNA_02250 +1.8 3.8 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_03280 +1.8 15.2 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02416 +1.8 8.8 DNA-binding protein HU compare
CCNA_03287 +1.8 11.5 PadR-family transcriptional regulator compare
CCNA_03064 +1.8 11.1 PadR-family transcriptional regulator compare
CCNA_01801 +1.8 7.7 hypothetical protein compare
CCNA_02289 +1.8 10.0 MarR/EmrR family transcriptional regulator compare
CCNA_01573 +1.8 9.4 ArsR-family transcriptional regulator compare
CCNA_01059 +1.8 15.5 S-layer protein rsaA compare
CCNA_03944 +1.8 1.3 hypothetical protein compare
CCNA_01684 +1.7 8.1 phenylalanine-4-hydroxylase compare
CCNA_02021 +1.7 5.4 hypothetical protein compare
CCNA_02387 +1.7 13.3 glutathione reductase compare
CCNA_01593 +1.7 10.7 Xaa-pro aminopeptidase compare
CCNA_03893 +1.7 4.0 hypothetical protein compare
CCNA_00769 +1.7 8.3 TetR family transcriptional regulator compare
CCNA_00527 +1.7 8.1 hypothetical protein compare
CCNA_00699 +1.7 6.5 LSU ribosomal protein L28P compare
CCNA_01931 +1.7 9.1 TetR-family transcriptional regulator compare
CCNA_02591 +1.7 6.8 glutaredoxin compare
CCNA_02957 +1.7 4.8 ArsR-family transcriptional regulator compare
CCNA_00518 +1.7 6.8 LSU ribosomal protein L25P compare
CCNA_00107 +1.6 4.5 Trm112p-like protein compare
CCNA_R0037 +1.6 4.6 tRNA-Glu compare
CCNA_02448 +1.6 11.7 hypothetical protein compare
CCNA_00506 +1.6 8.8 cytochrome b compare
CCNA_02287 +1.6 8.4 TetR-family transcriptional regulator compare
CCNA_02252 +1.6 5.5 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01847 +1.6 10.4 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01913 +1.6 10.2 MarR-family transcriptional regulator compare
CCNA_03951 +1.6 6.2 hypothetical protein compare
CCNA_01405 +1.6 4.6 GIY-YIG domain protein compare
CCNA_02379 +1.6 9.3 hypothetical protein compare
CCNA_03271 +1.6 9.9 methionine gamma-lyase compare
CCNA_03030 +1.6 9.0 cytochrome c2 compare
CCNA_03012 +1.6 8.0 peroxiredoxin compare
CCNA_03123 +1.6 10.3 ArsR-family transcriptional regulator compare
CCNA_01681 +1.5 5.6 RimI-like acetyltransferase compare
CCNA_03325 +1.5 5.1 hypothetical protein compare
CCNA_01526 +1.5 5.5 flagellar biosynthesis regulatory protein flaF compare
CCNA_00895 +1.5 7.3 hypothetical protein compare
CCNA_02619 +1.5 12.3 stomatin/prohibitin-related protein compare
CCNA_02447 +1.5 10.8 PspA/IM30 family regulatory protein compare
CCNA_02037 +1.5 8.7 ATP-dependent endopeptidase Lon compare
CCNA_01655 +1.5 7.9 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_02534 +1.5 2.7 hypothetical protein compare
CCNA_01742 +1.5 6.1 hypothetical protein compare
CCNA_01186 +1.5 5.6 hypothetical protein compare
CCNA_00264 +1.5 10.2 C4-dicarboxylate transport protein compare
CCNA_01752 +1.5 7.6 YicC-family protein compare
CCNA_03740 +1.5 7.0 cysteine synthase compare
CCNA_03936 +1.5 6.3 hypothetical protein compare
CCNA_03989 +1.5 10.7 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02617 +1.5 10.1 histidinol-phosphate aminotransferase compare
CCNA_03964 +1.5 3.4 hypothetical protein compare
CCNA_R0054 +1.5 3.0 tRNA-Gly compare
CCNA_00507 +1.5 6.4 cytochrome c1 compare
CCNA_03289 +1.5 10.5 HicB-family RNA-binding protein compare
CCNA_02081 +1.4 3.4 Sec-independent protein translocase protein tatB compare
CCNA_01541 +1.4 9.3 LysR-family transcriptional regulator compare
CCNA_01619 +1.4 8.2 NYN domain protein compare
CCNA_00756 +1.4 3.7 hypothetical protein compare
CCNA_02616 +1.4 8.7 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_01361 +1.4 2.8 PepSY superfamily protein compare
CCNA_03961 +1.4 3.6 hypothetical protein compare
CCNA_03252 +1.4 10.6 CopY/TcrY-family transcriptional regulator compare
CCNA_03612 +1.4 5.5 HTH XRE-family transcriptional regulator compare
CCNA_00147 +1.4 2.1 hypothetical protein compare
CCNA_01094 +1.4 2.7 hypothetical protein compare
CCNA_02980 +1.4 9.0 tryptophan 2,3-dioxygenase compare
CCNA_01780 +1.4 10.1 exopolyphosphatase compare
CCNA_03863 +1.4 3.8 hypothetical protein compare
CCNA_03108 +1.4 9.9 TonB-dependent outer membrane receptor compare
CCNA_01193 +1.4 9.8 amylosucrase compare
CCNA_01406 +1.4 6.2 metal-dependent hydrolase compare
CCNA_02330 +1.4 5.2 hypothetical protein compare
CCNA_02063 +1.4 5.6 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_00675 +1.4 4.6 VapC-like PIN domain ribonuclease compare
CCNA_03479 +1.4 7.1 MarR-family transcriptional regulator compare
CCNA_02132 +1.4 4.8 LacI-family transcriptional regulator compare
CCNA_00807 +1.4 1.6 ribonuclease P protein component compare
CCNA_02004 +1.4 2.4 SOS-induced inhibitor of cell division SidA compare
CCNA_01393 +1.4 10.0 soluble lytic murein transglycosylase compare
CCNA_01751 +1.4 4.8 aminodeoxychorismate lyase compare
CCNA_00846 +1.3 11.6 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00447 +1.3 6.4 chemotaxis protein cheD compare
CCNA_00705 +1.3 4.2 hypothetical protein compare
CCNA_00939 +1.3 4.9 MarR-family transcriptional regulator compare
CCNA_01678 +1.3 6.4 arginine N-succinyltransferase, beta chain compare
CCNA_01942 +1.3 5.2 Rrf2 family protein compare
CCNA_00919 +1.3 5.9 hypothetical protein compare
CCNA_02339 +1.3 8.3 methyltransferase compare
CCNA_02475 +1.3 9.0 transcriptional regulator vanR compare
CCNA_01528 +1.3 6.9 flagellin fljK compare
CCNA_02976 +1.3 6.0 MCP-signal associated domain protein compare
CCNA_03089 +1.3 6.0 hypothetical protein compare
CCNA_01608 +1.3 5.5 TetR-family transcriptional regulator compare
CCNA_00362 +1.3 2.8 zinc uptake regulation protein compare
CCNA_01525 +1.3 6.4 flagellar biosynthesis repressor flbT compare
CCNA_00931 +1.3 8.2 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_00554 +1.3 7.2 methyltransferase compare
CCNA_02338 +1.3 7.3 hypothetical protein compare
CCNA_03400 +1.3 2.2 hypothetical protein compare
CCNA_00803 +1.3 5.3 chemotaxis protein cheW compare
CCNA_01679 +1.3 7.0 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01728 +1.3 7.8 short chain dehydrogenase compare
CCNA_03849 +1.3 6.1 fructokinase compare
CCNA_00999 +1.3 4.3 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03524 +1.3 7.0 di-/tripeptide transporter compare
CCNA_02760 +1.3 2.4 hypothetical protein compare
CCNA_02309 +1.3 4.9 EF hand domain protein compare
CCNA_03940 +1.3 3.7 hypothetical protein compare
CCNA_03519 +1.3 5.4 PadR-family transcriptional regulator compare
CCNA_00028 +1.3 4.7 TonB-dependent receptor compare
CCNA_02367 +1.3 8.7 CelR-family transcriptional regulator compare
CCNA_01826 +1.3 6.8 vitamin B12 receptor compare
CCNA_02805 +1.3 6.2 hypothetical protein compare
CCNA_01680 +1.2 7.3 succinylarginine dihydrolase compare
CCNA_01926 +1.2 5.8 GGDEF diguanylate cyclase DgcB compare
CCNA_00031 +1.2 6.4 toxin protein VapC compare
CCNA_02728 +1.2 6.3 hypothetical protein compare
CCNA_02910 +1.2 9.7 TonB-dependent receptor compare
CCNA_03515 +1.2 5.9 hypothetical protein compare
CCNA_01074 +1.2 2.0 entericidin B-like protein compare
CCNA_01949 +1.2 3.4 bactofilin A BacA compare
CCNA_01173 +1.2 6.2 chorismate mutase compare
CCNA_01968 +1.2 2.7 pentapeptide repeats containing protein compare
CCNA_00929 +1.2 8.4 Riboflavin-specific deaminase family protein compare
CCNA_02297 +1.2 4.8 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_03129 +1.2 7.8 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03379 +1.2 2.6 Cro/CI family transcriptional regulator compare
CCNA_01813 +1.2 6.7 tRNA-dihydrouridine synthase compare
CCNA_01020 +1.2 6.1 LacI-family transcriptional regulator compare
CCNA_02467 +1.2 7.5 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01453 +1.2 3.0 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01614 +1.2 1.3 hypothetical protein compare
CCNA_02025 +1.2 2.8 hypothetical protein compare
CCNA_03832 +1.2 3.9 TetR-family transcriptional regulator compare
CCNA_01575 +1.2 7.4 glucose / sorbosone dehydrogenase compare
CCNA_01375 +1.2 4.2 lactoylglutathione lyase compare
CCNA_00750 +1.2 7.6 FeaR-family transcriptional regulator compare
CCNA_02164 +1.2 3.3 glutamate dehydrogenase/leucine dehydrogenase compare
CCNA_01184 +1.2 6.7 MutT/nudix family hydrolase compare
CCNA_02363 +1.2 5.3 hypothetical protein compare
CCNA_02732 +1.2 5.5 hypothetical protein compare
CCNA_01420 +1.2 3.8 NrdR family transcriptional regulator compare
CCNA_03215 +1.2 6.8 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02843 +1.2 2.9 toxin protein parE-3 compare
CCNA_01415 +1.1 7.9 methyltransferase compare
CCNA_00947 +1.1 8.3 flagellar hook protein FlgE compare
CCNA_01025 +1.1 6.6 hypothetical protein compare
CCNA_00954 +1.1 7.8 AAA-family response regulator flbD compare
CCNA_00998 +1.1 5.4 ROS/MUCR transcriptional regulator compare
CCNA_02026 +1.1 2.9 hypothetical protein compare
CCNA_00847 +1.1 6.4 leucine-responsive regulatory protein compare
CCNA_03805 +1.1 8.6 PadR-family transcriptional regulator compare
CCNA_02567 +1.1 8.4 sensory transduction histidine kinase pleC compare
CCNA_02012 +1.1 6.0 metal-dependent hydrolase compare
CCNA_02324 +1.1 6.7 heat shock protein 33 hsp33 compare
CCNA_03043 +1.1 4.7 type IV pilin protein pilA compare
CCNA_00945 +1.1 5.6 chemotaxis protein MotD compare
CCNA_00352 +1.1 7.2 integral membrane protein compare
CCNA_03762 +1.1 2.7 acetolactate synthase-related protein compare
CCNA_01716 +1.1 1.3 hypothetical protein compare
CCNA_03372 +1.1 3.0 bacterioferritin-associated ferredoxin compare
CCNA_03949 +1.1 4.8 hypothetical protein compare
CCNA_01235 +1.1 6.0 AcrR-family transcriptional regulator compare
CCNA_01580 +1.1 5.1 M15 superfamily membrane peptidase compare
CCNA_01414 +1.1 6.9 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_01533 +1.1 4.4 hypothetical protein compare
CCNA_01964 +1.1 2.7 NADH dehydrogenase compare
CCNA_00438 +1.1 2.9 hypothetical protein compare
CCNA_03062 +1.1 6.8 cell wall hydrolase family protein compare
CCNA_00448 +1.1 5.8 cheU protein compare
CCNA_02761 +1.1 3.1 hypothetical protein compare
CCNA_03516 +1.1 5.2 protoheme IX farnesyltransferase coxE compare
CCNA_01338 +1.1 4.9 glyoxalase family protein compare
CCNA_02067 +1.1 6.0 conserved membrane spanning protein compare
CCNA_02589 +1.1 2.7 BolA-related transcriptional regulator compare
CCNA_02125 +1.1 8.1 polar development protein podJ compare
CCNA_03371 +1.1 4.2 bacterioferritin compare
CCNA_03622 +1.1 5.9 beta-lactamase repressor compare
CCNA_00368 +1.1 6.5 phosphonates transport system permease protein phnE compare
CCNA_01008 +1.1 7.7 urocanate hydratase compare
CCNA_02273 +1.1 3.6 glutathione peroxidase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in carbon source experiments

For carbon source D-Maltose monohydrate across organisms